Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0575:0558
Extra
PDB:
ATOM 1 O3' C A 574 -13.392 89.815 114.740 1.00 75.20 O
ATOM 2 P A A 575 -13.055 90.390 113.279 1.00 76.02 P
ATOM 3 OP1 A A 575 -12.513 91.765 113.448 1.00 75.60 O
ATOM 4 OP2 A A 575 -14.253 90.171 112.420 1.00 75.42 O
ATOM 5 O5' A A 575 -11.894 89.446 112.742 1.00 73.69 O
ATOM 6 C5' A A 575 -11.682 89.291 111.333 1.00 74.86 C
ATOM 7 C4' A A 575 -10.229 89.009 111.041 1.00 74.80 C
ATOM 8 O4' A A 575 -9.417 90.140 111.463 1.00 75.14 O
ATOM 9 C3' A A 575 -9.634 87.783 111.716 1.00 74.63 C
ATOM 10 O3' A A 575 -8.725 87.185 110.807 1.00 76.03 O
ATOM 11 C2' A A 575 -8.919 88.380 112.926 1.00 74.10 C
ATOM 12 O2' A A 575 -7.834 87.607 113.392 1.00 74.82 O
ATOM 13 C1' A A 575 -8.417 89.700 112.359 1.00 73.21 C
ATOM 14 N9 A A 575 -8.204 90.743 113.362 1.00 71.51 N
ATOM 15 C8 A A 575 -9.144 91.502 114.017 1.00 70.72 C
ATOM 16 N7 A A 575 -8.631 92.389 114.836 1.00 69.85 N
ATOM 17 C5 A A 575 -7.260 92.196 114.719 1.00 70.04 C
ATOM 18 C6 A A 575 -6.157 92.827 115.327 1.00 68.68 C
ATOM 19 N6 A A 575 -6.265 93.829 116.202 1.00 68.10 N
ATOM 20 N1 A A 575 -4.923 92.388 114.997 1.00 67.52 N
ATOM 21 C2 A A 575 -4.813 91.390 114.115 1.00 67.29 C
ATOM 22 N3 A A 575 -5.767 90.722 113.474 1.00 68.77 N
ATOM 23 C4 A A 575 -6.984 91.178 113.824 1.00 70.60 C
ATOM 24 P G A 576 -9.211 85.943 109.906 1.00 78.92 P
ATOM 25 OP1 G A 576 -10.692 85.992 109.866 1.00 80.21 O
ATOM 26 OP2 G A 576 -8.532 84.714 110.389 1.00 78.24 O
ATOM 27 O5' G A 576 -8.691 86.289 108.436 1.00 78.64 O
TER
ATOM 1 O3' A B 557 -2.237 95.961 117.704 1.00 69.81 O
ATOM 2 P C B 558 -3.114 95.717 119.028 1.00 73.32 P
ATOM 3 OP1 C B 558 -2.175 95.459 120.153 1.00 73.29 O
ATOM 4 OP2 C B 558 -4.172 94.715 118.714 1.00 70.31 O
ATOM 5 O5' C B 558 -3.762 97.148 119.287 1.00 72.72 O
ATOM 6 C5' C B 558 -2.912 98.293 119.475 1.00 76.26 C
ATOM 7 C4' C B 558 -3.737 99.535 119.685 1.00 78.48 C
ATOM 8 O4' C B 558 -4.526 99.798 118.497 1.00 79.22 O
ATOM 9 C3' C B 558 -4.760 99.449 120.799 1.00 79.96 C
ATOM 10 O3' C B 558 -4.166 99.682 122.067 1.00 82.81 O
ATOM 11 C2' C B 558 -5.759 100.517 120.384 1.00 79.19 C
ATOM 12 O2' C B 558 -5.291 101.827 120.642 1.00 78.23 O
ATOM 13 C1' C B 558 -5.799 100.298 118.871 1.00 78.24 C
ATOM 14 N1 C B 558 -6.809 99.304 118.468 1.00 77.39 N
ATOM 15 C2 C B 558 -8.132 99.719 118.259 1.00 77.68 C
ATOM 16 O2 C B 558 -8.422 100.920 118.409 1.00 78.74 O
ATOM 17 N3 C B 558 -9.061 98.799 117.902 1.00 77.14 N
ATOM 18 C4 C B 558 -8.712 97.516 117.758 1.00 76.85 C
ATOM 19 N4 C B 558 -9.662 96.637 117.423 1.00 76.16 N
ATOM 20 C5 C B 558 -7.374 97.074 117.955 1.00 76.97 C
ATOM 21 C6 C B 558 -6.466 97.990 118.305 1.00 76.82 C
ATOM 22 P C B 559 -4.537 98.724 123.304 1.00 84.64 P
ATOM 23 OP1 C B 559 -3.814 99.253 124.493 1.00 83.80 O
ATOM 24 OP2 C B 559 -4.342 97.306 122.895 1.00 82.42 O
ATOM 25 O5' C B 559 -6.098 98.961 123.508 1.00 84.81 O
TER
ATOM 2 P A A 575 -13.055 90.390 113.279 1.00 76.02 P
ATOM 3 OP1 A A 575 -12.513 91.765 113.448 1.00 75.60 O
ATOM 4 OP2 A A 575 -14.253 90.171 112.420 1.00 75.42 O
ATOM 5 O5' A A 575 -11.894 89.446 112.742 1.00 73.69 O
ATOM 6 C5' A A 575 -11.682 89.291 111.333 1.00 74.86 C
ATOM 7 C4' A A 575 -10.229 89.009 111.041 1.00 74.80 C
ATOM 8 O4' A A 575 -9.417 90.140 111.463 1.00 75.14 O
ATOM 9 C3' A A 575 -9.634 87.783 111.716 1.00 74.63 C
ATOM 10 O3' A A 575 -8.725 87.185 110.807 1.00 76.03 O
ATOM 11 C2' A A 575 -8.919 88.380 112.926 1.00 74.10 C
ATOM 12 O2' A A 575 -7.834 87.607 113.392 1.00 74.82 O
ATOM 13 C1' A A 575 -8.417 89.700 112.359 1.00 73.21 C
ATOM 14 N9 A A 575 -8.204 90.743 113.362 1.00 71.51 N
ATOM 15 C8 A A 575 -9.144 91.502 114.017 1.00 70.72 C
ATOM 16 N7 A A 575 -8.631 92.389 114.836 1.00 69.85 N
ATOM 17 C5 A A 575 -7.260 92.196 114.719 1.00 70.04 C
ATOM 18 C6 A A 575 -6.157 92.827 115.327 1.00 68.68 C
ATOM 19 N6 A A 575 -6.265 93.829 116.202 1.00 68.10 N
ATOM 20 N1 A A 575 -4.923 92.388 114.997 1.00 67.52 N
ATOM 21 C2 A A 575 -4.813 91.390 114.115 1.00 67.29 C
ATOM 22 N3 A A 575 -5.767 90.722 113.474 1.00 68.77 N
ATOM 23 C4 A A 575 -6.984 91.178 113.824 1.00 70.60 C
ATOM 24 P G A 576 -9.211 85.943 109.906 1.00 78.92 P
ATOM 25 OP1 G A 576 -10.692 85.992 109.866 1.00 80.21 O
ATOM 26 OP2 G A 576 -8.532 84.714 110.389 1.00 78.24 O
ATOM 27 O5' G A 576 -8.691 86.289 108.436 1.00 78.64 O
TER
ATOM 1 O3' A B 557 -2.237 95.961 117.704 1.00 69.81 O
ATOM 2 P C B 558 -3.114 95.717 119.028 1.00 73.32 P
ATOM 3 OP1 C B 558 -2.175 95.459 120.153 1.00 73.29 O
ATOM 4 OP2 C B 558 -4.172 94.715 118.714 1.00 70.31 O
ATOM 5 O5' C B 558 -3.762 97.148 119.287 1.00 72.72 O
ATOM 6 C5' C B 558 -2.912 98.293 119.475 1.00 76.26 C
ATOM 7 C4' C B 558 -3.737 99.535 119.685 1.00 78.48 C
ATOM 8 O4' C B 558 -4.526 99.798 118.497 1.00 79.22 O
ATOM 9 C3' C B 558 -4.760 99.449 120.799 1.00 79.96 C
ATOM 10 O3' C B 558 -4.166 99.682 122.067 1.00 82.81 O
ATOM 11 C2' C B 558 -5.759 100.517 120.384 1.00 79.19 C
ATOM 12 O2' C B 558 -5.291 101.827 120.642 1.00 78.23 O
ATOM 13 C1' C B 558 -5.799 100.298 118.871 1.00 78.24 C
ATOM 14 N1 C B 558 -6.809 99.304 118.468 1.00 77.39 N
ATOM 15 C2 C B 558 -8.132 99.719 118.259 1.00 77.68 C
ATOM 16 O2 C B 558 -8.422 100.920 118.409 1.00 78.74 O
ATOM 17 N3 C B 558 -9.061 98.799 117.902 1.00 77.14 N
ATOM 18 C4 C B 558 -8.712 97.516 117.758 1.00 76.85 C
ATOM 19 N4 C B 558 -9.662 96.637 117.423 1.00 76.16 N
ATOM 20 C5 C B 558 -7.374 97.074 117.955 1.00 76.97 C
ATOM 21 C6 C B 558 -6.466 97.990 118.305 1.00 76.82 C
ATOM 22 P C B 559 -4.537 98.724 123.304 1.00 84.64 P
ATOM 23 OP1 C B 559 -3.814 99.253 124.493 1.00 83.80 O
ATOM 24 OP2 C B 559 -4.342 97.306 122.895 1.00 82.42 O
ATOM 25 O5' C B 559 -6.098 98.961 123.508 1.00 84.81 O
TER
Atoms:
OP1: (-12.513,91.765,113.448)
OP2: (-14.253,90.171,112.420)
C3': (-9.634,87.783,111.716)
C1': (-8.417,89.700,112.359)
C5': (-11.682,89.291,111.333)
O4': (-9.417,90.140,111.463)
C8: (-9.144,91.502,114.017)
O2': (-7.834,87.607,113.392)
C6: (-6.157,92.827,115.327)
C5: (-7.260,92.196,114.719)
C4: (-6.984,91.178,113.824)
P: (-13.055,90.390,113.279)
C4': (-10.229,89.009,111.041)
C2': (-8.919,88.380,112.926)
C2: (-4.813,91.390,114.115)
N1: (-4.923,92.388,114.997)
N3: (-5.767,90.722,113.474)
N6: (-6.265,93.829,116.202)
N7: (-8.631,92.389,114.836)
N9: (-8.204,90.743,113.362)
O5': (-11.894,89.446,112.742)
O3': (-8.725,87.185,110.807)
OP2: (-14.253,90.171,112.420)
C3': (-9.634,87.783,111.716)
C1': (-8.417,89.700,112.359)
C5': (-11.682,89.291,111.333)
O4': (-9.417,90.140,111.463)
C8: (-9.144,91.502,114.017)
O2': (-7.834,87.607,113.392)
C6: (-6.157,92.827,115.327)
C5: (-7.260,92.196,114.719)
C4: (-6.984,91.178,113.824)
P: (-13.055,90.390,113.279)
C4': (-10.229,89.009,111.041)
C2': (-8.919,88.380,112.926)
C2: (-4.813,91.390,114.115)
N1: (-4.923,92.388,114.997)
N3: (-5.767,90.722,113.474)
N6: (-6.265,93.829,116.202)
N7: (-8.631,92.389,114.836)
N9: (-8.204,90.743,113.362)
O5': (-11.894,89.446,112.742)
O3': (-8.725,87.185,110.807)
C2: (-8.132,99.719,118.259)
OP1: (-2.175,95.459,120.153)
OP2: (-4.172,94.715,118.714)
C4: (-8.712,97.516,117.758)
O5': (-3.762,97.148,119.287)
C3': (-4.760,99.449,120.799)
C1': (-5.799,100.298,118.871)
O4': (-4.526,99.798,118.497)
C5': (-2.912,98.293,119.475)
P: (-3.114,95.717,119.028)
O2: (-8.422,100.920,118.409)
C4': (-3.737,99.535,119.685)
C2': (-5.759,100.517,120.384)
O2': (-5.291,101.827,120.642)
N1: (-6.809,99.304,118.468)
N3: (-9.061,98.799,117.902)
N4: (-9.662,96.637,117.423)
C6: (-6.466,97.990,118.305)
C5: (-7.374,97.074,117.955)
O3': (-4.166,99.682,122.067)
OP1: (-2.175,95.459,120.153)
OP2: (-4.172,94.715,118.714)
C4: (-8.712,97.516,117.758)
O5': (-3.762,97.148,119.287)
C3': (-4.760,99.449,120.799)
C1': (-5.799,100.298,118.871)
O4': (-4.526,99.798,118.497)
C5': (-2.912,98.293,119.475)
P: (-3.114,95.717,119.028)
O2: (-8.422,100.920,118.409)
C4': (-3.737,99.535,119.685)
C2': (-5.759,100.517,120.384)
O2': (-5.291,101.827,120.642)
N1: (-6.809,99.304,118.468)
N3: (-9.061,98.799,117.902)
N4: (-9.662,96.637,117.423)
C6: (-6.466,97.990,118.305)
C5: (-7.374,97.074,117.955)
O3': (-4.166,99.682,122.067)
Image (generated by PyMOL):