Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0682:0719
Extra
PDB:
ATOM 1 O3' A A 681 66.508 72.768 39.775 1.00 52.30 O
ATOM 2 P A A 682 65.536 72.174 38.644 1.00 53.02 P
ATOM 3 OP1 A A 682 65.673 73.075 37.475 1.00 54.22 O
ATOM 4 OP2 A A 682 64.198 71.938 39.227 1.00 51.83 O
ATOM 5 O5' A A 682 66.202 70.777 38.263 1.00 53.91 O
ATOM 6 C5' A A 682 67.467 70.729 37.571 1.00 55.01 C
ATOM 7 C4' A A 682 67.943 69.301 37.436 1.00 56.44 C
ATOM 8 O4' A A 682 68.209 68.760 38.757 1.00 56.99 O
ATOM 9 C3' A A 682 66.953 68.329 36.811 1.00 56.82 C
ATOM 10 O3' A A 682 66.998 68.349 35.384 1.00 57.75 O
ATOM 11 C2' A A 682 67.421 66.998 37.380 1.00 56.64 C
ATOM 12 O2' A A 682 68.561 66.492 36.713 1.00 56.56 O
ATOM 13 C1' A A 682 67.796 67.406 38.807 1.00 56.43 C
ATOM 14 N9 A A 682 66.648 67.327 39.706 1.00 55.77 N
ATOM 15 C8 A A 682 65.649 68.255 39.854 1.00 55.64 C
ATOM 16 N7 A A 682 64.730 67.908 40.716 1.00 56.46 N
ATOM 17 C5 A A 682 65.153 66.669 41.174 1.00 56.53 C
ATOM 18 C6 A A 682 64.605 65.772 42.104 1.00 56.56 C
ATOM 19 N6 A A 682 63.470 66.001 42.769 1.00 56.47 N
ATOM 20 N1 A A 682 65.270 64.619 42.330 1.00 56.12 N
ATOM 21 C2 A A 682 66.410 64.398 41.663 1.00 56.26 C
ATOM 22 N3 A A 682 67.026 65.167 40.767 1.00 55.45 N
ATOM 23 C4 A A 682 66.337 66.301 40.564 1.00 56.15 C
ATOM 24 P C A 683 65.630 68.361 34.534 1.00 58.22 P
ATOM 25 OP1 C A 683 66.020 67.939 33.172 1.00 59.54 O
ATOM 26 OP2 C A 683 64.939 69.657 34.721 1.00 59.14 O
ATOM 27 O5' C A 683 64.716 67.235 35.203 1.00 57.76 O
TER
ATOM 1 O3' U B 718 59.246 63.666 43.803 1.00 50.54 O
ATOM 2 P C B 719 60.635 62.975 44.225 1.00 52.24 P
ATOM 3 OP1 C B 719 61.672 63.459 43.284 1.00 53.03 O
ATOM 4 OP2 C B 719 60.415 61.518 44.376 1.00 53.45 O
ATOM 5 O5' C B 719 60.952 63.579 45.664 1.00 53.04 O
ATOM 6 C5' C B 719 61.382 64.948 45.824 1.00 52.24 C
ATOM 7 C4' C B 719 61.772 65.207 47.260 1.00 51.15 C
ATOM 8 O4' C B 719 60.599 65.162 48.112 1.00 51.35 O
ATOM 9 C3' C B 719 62.711 64.178 47.859 1.00 50.40 C
ATOM 10 O3' C B 719 64.048 64.469 47.507 1.00 50.50 O
ATOM 11 C2' C B 719 62.449 64.317 49.352 1.00 50.86 C
ATOM 12 O2' C B 719 63.114 65.416 49.928 1.00 51.72 O
ATOM 13 C1' C B 719 60.946 64.602 49.369 1.00 51.85 C
ATOM 14 N1 C B 719 60.102 63.417 49.619 1.00 51.77 N
ATOM 15 C2 C B 719 59.782 63.084 50.939 1.00 51.99 C
ATOM 16 O2 C B 719 60.219 63.783 51.861 1.00 53.55 O
ATOM 17 N3 C B 719 59.009 62.011 51.180 1.00 51.83 N
ATOM 18 C4 C B 719 58.564 61.273 50.169 1.00 52.64 C
ATOM 19 N4 C B 719 57.813 60.212 50.460 1.00 54.56 N
ATOM 20 C5 C B 719 58.870 61.585 48.815 1.00 52.67 C
ATOM 21 C6 C B 719 59.634 62.654 48.588 1.00 52.02 C
ATOM 22 P U B 720 65.130 63.293 47.469 1.00 52.18 P
ATOM 23 OP1 U B 720 66.426 63.900 47.095 1.00 53.83 O
ATOM 24 OP2 U B 720 64.591 62.174 46.667 1.00 54.11 O
ATOM 25 O5' U B 720 65.228 62.835 48.985 1.00 54.58 O
TER
ATOM 2 P A A 682 65.536 72.174 38.644 1.00 53.02 P
ATOM 3 OP1 A A 682 65.673 73.075 37.475 1.00 54.22 O
ATOM 4 OP2 A A 682 64.198 71.938 39.227 1.00 51.83 O
ATOM 5 O5' A A 682 66.202 70.777 38.263 1.00 53.91 O
ATOM 6 C5' A A 682 67.467 70.729 37.571 1.00 55.01 C
ATOM 7 C4' A A 682 67.943 69.301 37.436 1.00 56.44 C
ATOM 8 O4' A A 682 68.209 68.760 38.757 1.00 56.99 O
ATOM 9 C3' A A 682 66.953 68.329 36.811 1.00 56.82 C
ATOM 10 O3' A A 682 66.998 68.349 35.384 1.00 57.75 O
ATOM 11 C2' A A 682 67.421 66.998 37.380 1.00 56.64 C
ATOM 12 O2' A A 682 68.561 66.492 36.713 1.00 56.56 O
ATOM 13 C1' A A 682 67.796 67.406 38.807 1.00 56.43 C
ATOM 14 N9 A A 682 66.648 67.327 39.706 1.00 55.77 N
ATOM 15 C8 A A 682 65.649 68.255 39.854 1.00 55.64 C
ATOM 16 N7 A A 682 64.730 67.908 40.716 1.00 56.46 N
ATOM 17 C5 A A 682 65.153 66.669 41.174 1.00 56.53 C
ATOM 18 C6 A A 682 64.605 65.772 42.104 1.00 56.56 C
ATOM 19 N6 A A 682 63.470 66.001 42.769 1.00 56.47 N
ATOM 20 N1 A A 682 65.270 64.619 42.330 1.00 56.12 N
ATOM 21 C2 A A 682 66.410 64.398 41.663 1.00 56.26 C
ATOM 22 N3 A A 682 67.026 65.167 40.767 1.00 55.45 N
ATOM 23 C4 A A 682 66.337 66.301 40.564 1.00 56.15 C
ATOM 24 P C A 683 65.630 68.361 34.534 1.00 58.22 P
ATOM 25 OP1 C A 683 66.020 67.939 33.172 1.00 59.54 O
ATOM 26 OP2 C A 683 64.939 69.657 34.721 1.00 59.14 O
ATOM 27 O5' C A 683 64.716 67.235 35.203 1.00 57.76 O
TER
ATOM 1 O3' U B 718 59.246 63.666 43.803 1.00 50.54 O
ATOM 2 P C B 719 60.635 62.975 44.225 1.00 52.24 P
ATOM 3 OP1 C B 719 61.672 63.459 43.284 1.00 53.03 O
ATOM 4 OP2 C B 719 60.415 61.518 44.376 1.00 53.45 O
ATOM 5 O5' C B 719 60.952 63.579 45.664 1.00 53.04 O
ATOM 6 C5' C B 719 61.382 64.948 45.824 1.00 52.24 C
ATOM 7 C4' C B 719 61.772 65.207 47.260 1.00 51.15 C
ATOM 8 O4' C B 719 60.599 65.162 48.112 1.00 51.35 O
ATOM 9 C3' C B 719 62.711 64.178 47.859 1.00 50.40 C
ATOM 10 O3' C B 719 64.048 64.469 47.507 1.00 50.50 O
ATOM 11 C2' C B 719 62.449 64.317 49.352 1.00 50.86 C
ATOM 12 O2' C B 719 63.114 65.416 49.928 1.00 51.72 O
ATOM 13 C1' C B 719 60.946 64.602 49.369 1.00 51.85 C
ATOM 14 N1 C B 719 60.102 63.417 49.619 1.00 51.77 N
ATOM 15 C2 C B 719 59.782 63.084 50.939 1.00 51.99 C
ATOM 16 O2 C B 719 60.219 63.783 51.861 1.00 53.55 O
ATOM 17 N3 C B 719 59.009 62.011 51.180 1.00 51.83 N
ATOM 18 C4 C B 719 58.564 61.273 50.169 1.00 52.64 C
ATOM 19 N4 C B 719 57.813 60.212 50.460 1.00 54.56 N
ATOM 20 C5 C B 719 58.870 61.585 48.815 1.00 52.67 C
ATOM 21 C6 C B 719 59.634 62.654 48.588 1.00 52.02 C
ATOM 22 P U B 720 65.130 63.293 47.469 1.00 52.18 P
ATOM 23 OP1 U B 720 66.426 63.900 47.095 1.00 53.83 O
ATOM 24 OP2 U B 720 64.591 62.174 46.667 1.00 54.11 O
ATOM 25 O5' U B 720 65.228 62.835 48.985 1.00 54.58 O
TER
Atoms:
OP1: (65.673,73.075,37.475)
OP2: (64.198,71.938,39.227)
C3': (66.953,68.329,36.811)
C1': (67.796,67.406,38.807)
C5': (67.467,70.729,37.571)
O4': (68.209,68.760,38.757)
C8: (65.649,68.255,39.854)
O2': (68.561,66.492,36.713)
C6: (64.605,65.772,42.104)
C5: (65.153,66.669,41.174)
C4: (66.337,66.301,40.564)
P: (65.536,72.174,38.644)
C4': (67.943,69.301,37.436)
C2': (67.421,66.998,37.380)
C2: (66.410,64.398,41.663)
N1: (65.270,64.619,42.330)
N3: (67.026,65.167,40.767)
N6: (63.470,66.001,42.769)
N7: (64.730,67.908,40.716)
N9: (66.648,67.327,39.706)
O5': (66.202,70.777,38.263)
O3': (66.998,68.349,35.384)
OP2: (64.198,71.938,39.227)
C3': (66.953,68.329,36.811)
C1': (67.796,67.406,38.807)
C5': (67.467,70.729,37.571)
O4': (68.209,68.760,38.757)
C8: (65.649,68.255,39.854)
O2': (68.561,66.492,36.713)
C6: (64.605,65.772,42.104)
C5: (65.153,66.669,41.174)
C4: (66.337,66.301,40.564)
P: (65.536,72.174,38.644)
C4': (67.943,69.301,37.436)
C2': (67.421,66.998,37.380)
C2: (66.410,64.398,41.663)
N1: (65.270,64.619,42.330)
N3: (67.026,65.167,40.767)
N6: (63.470,66.001,42.769)
N7: (64.730,67.908,40.716)
N9: (66.648,67.327,39.706)
O5': (66.202,70.777,38.263)
O3': (66.998,68.349,35.384)
C2: (59.782,63.084,50.939)
OP1: (61.672,63.459,43.284)
OP2: (60.415,61.518,44.376)
C4: (58.564,61.273,50.169)
O5': (60.952,63.579,45.664)
C3': (62.711,64.178,47.859)
C1': (60.946,64.602,49.369)
O4': (60.599,65.162,48.112)
C5': (61.382,64.948,45.824)
P: (60.635,62.975,44.225)
O2: (60.219,63.783,51.861)
C4': (61.772,65.207,47.260)
C2': (62.449,64.317,49.352)
O2': (63.114,65.416,49.928)
N1: (60.102,63.417,49.619)
N3: (59.009,62.011,51.180)
N4: (57.813,60.212,50.460)
C6: (59.634,62.654,48.588)
C5: (58.870,61.585,48.815)
O3': (64.048,64.469,47.507)
OP1: (61.672,63.459,43.284)
OP2: (60.415,61.518,44.376)
C4: (58.564,61.273,50.169)
O5': (60.952,63.579,45.664)
C3': (62.711,64.178,47.859)
C1': (60.946,64.602,49.369)
O4': (60.599,65.162,48.112)
C5': (61.382,64.948,45.824)
P: (60.635,62.975,44.225)
O2: (60.219,63.783,51.861)
C4': (61.772,65.207,47.260)
C2': (62.449,64.317,49.352)
O2': (63.114,65.416,49.928)
N1: (60.102,63.417,49.619)
N3: (59.009,62.011,51.180)
N4: (57.813,60.212,50.460)
C6: (59.634,62.654,48.588)
C5: (58.870,61.585,48.815)
O3': (64.048,64.469,47.507)
Image (generated by PyMOL):