Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X33:X63
Extra
PDB:
ATOM 1 O3' G A 32 -7.558 -7.695 -2.864 1.00 32.11 O
ATOM 2 P A A 33 -7.040 -7.912 -1.364 1.00 33.67 P
ATOM 3 OP1 A A 33 -6.146 -6.784 -1.031 1.00 33.21 O
ATOM 4 OP2 A A 33 -6.560 -9.305 -1.231 1.00 32.34 O
ATOM 5 O5' A A 33 -8.381 -7.783 -0.507 1.00 33.59 O
ATOM 6 C5' A A 33 -8.943 -6.504 -0.240 1.00 33.55 C
ATOM 7 C4' A A 33 -9.343 -6.457 1.217 1.00 34.72 C
ATOM 8 O4' A A 33 -10.276 -7.536 1.472 1.00 34.15 O
ATOM 9 C3' A A 33 -8.186 -6.658 2.194 1.00 36.43 C
ATOM 10 O3' A A 33 -8.204 -5.635 3.171 1.00 39.46 O
ATOM 11 C2' A A 33 -8.478 -8.012 2.834 1.00 35.92 C
ATOM 12 O2' A A 33 -8.075 -8.069 4.185 1.00 38.84 O
ATOM 13 C1' A A 33 -9.996 -8.059 2.747 1.00 33.10 C
ATOM 14 N9 A A 33 -10.535 -9.411 2.829 1.00 31.38 N
ATOM 15 C8 A A 33 -9.875 -10.578 2.553 1.00 31.05 C
ATOM 16 N7 A A 33 -10.612 -11.651 2.721 1.00 31.02 N
ATOM 17 C5 A A 33 -11.835 -11.146 3.139 1.00 30.13 C
ATOM 18 C6 A A 33 -13.049 -11.767 3.488 1.00 30.13 C
ATOM 19 N6 A A 33 -13.235 -13.091 3.474 1.00 29.54 N
ATOM 20 N1 A A 33 -14.071 -10.968 3.857 1.00 30.46 N
ATOM 21 C2 A A 33 -13.896 -9.641 3.872 1.00 29.57 C
ATOM 22 N3 A A 33 -12.806 -8.942 3.577 1.00 29.79 N
ATOM 23 C4 A A 33 -11.805 -9.766 3.208 1.00 30.55 C
ATOM 24 P A A 34 -6.937 -4.682 3.380 1.00 41.67 P
ATOM 25 OP1 A A 34 -5.715 -5.408 2.973 1.00 41.31 O
ATOM 26 OP2 A A 34 -7.046 -4.119 4.745 1.00 40.76 O
ATOM 27 O5' A A 34 -7.250 -3.529 2.323 1.00 42.65 O
TER
ATOM 1 O3' G B 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 2 P C B 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 3 OP1 C B 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 4 OP2 C B 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 5 O5' C B 63 -15.441 -17.229 4.507 1.00 33.27 O
ATOM 6 C5' C B 63 -14.178 -17.499 3.942 1.00 31.42 C
ATOM 7 C4' C B 63 -14.066 -19.003 3.791 1.00 31.26 C
ATOM 8 O4' C B 63 -13.884 -19.580 5.110 1.00 32.36 O
ATOM 9 C3' C B 63 -15.323 -19.686 3.265 1.00 31.16 C
ATOM 10 O3' C B 63 -15.369 -19.671 1.841 1.00 31.30 O
ATOM 11 C2' C B 63 -15.137 -21.096 3.814 1.00 30.47 C
ATOM 12 O2' C B 63 -14.186 -21.842 3.080 1.00 30.24 O
ATOM 13 C1' C B 63 -14.607 -20.795 5.212 1.00 29.96 C
ATOM 14 N1 C B 63 -15.689 -20.642 6.236 1.00 29.96 N
ATOM 15 C2 C B 63 -16.404 -21.770 6.657 1.00 29.26 C
ATOM 16 O2 C B 63 -16.134 -22.880 6.182 1.00 29.48 O
ATOM 17 N3 C B 63 -17.384 -21.619 7.576 1.00 29.15 N
ATOM 18 C4 C B 63 -17.661 -20.417 8.077 1.00 29.27 C
ATOM 19 N4 C B 63 -18.638 -20.334 8.987 1.00 28.37 N
ATOM 20 C5 C B 63 -16.947 -19.253 7.664 1.00 29.28 C
ATOM 21 C6 C B 63 -15.976 -19.412 6.754 1.00 29.11 C
ATOM 22 P C B 64 -16.774 -19.635 1.067 1.00 32.67 P
ATOM 23 OP1 C B 64 -16.492 -19.335 -0.353 1.00 32.50 O
ATOM 24 OP2 C B 64 -17.711 -18.782 1.833 1.00 32.82 O
ATOM 25 O5' C B 64 -17.309 -21.137 1.179 1.00 31.94 O
TER
ATOM 2 P A A 33 -7.040 -7.912 -1.364 1.00 33.67 P
ATOM 3 OP1 A A 33 -6.146 -6.784 -1.031 1.00 33.21 O
ATOM 4 OP2 A A 33 -6.560 -9.305 -1.231 1.00 32.34 O
ATOM 5 O5' A A 33 -8.381 -7.783 -0.507 1.00 33.59 O
ATOM 6 C5' A A 33 -8.943 -6.504 -0.240 1.00 33.55 C
ATOM 7 C4' A A 33 -9.343 -6.457 1.217 1.00 34.72 C
ATOM 8 O4' A A 33 -10.276 -7.536 1.472 1.00 34.15 O
ATOM 9 C3' A A 33 -8.186 -6.658 2.194 1.00 36.43 C
ATOM 10 O3' A A 33 -8.204 -5.635 3.171 1.00 39.46 O
ATOM 11 C2' A A 33 -8.478 -8.012 2.834 1.00 35.92 C
ATOM 12 O2' A A 33 -8.075 -8.069 4.185 1.00 38.84 O
ATOM 13 C1' A A 33 -9.996 -8.059 2.747 1.00 33.10 C
ATOM 14 N9 A A 33 -10.535 -9.411 2.829 1.00 31.38 N
ATOM 15 C8 A A 33 -9.875 -10.578 2.553 1.00 31.05 C
ATOM 16 N7 A A 33 -10.612 -11.651 2.721 1.00 31.02 N
ATOM 17 C5 A A 33 -11.835 -11.146 3.139 1.00 30.13 C
ATOM 18 C6 A A 33 -13.049 -11.767 3.488 1.00 30.13 C
ATOM 19 N6 A A 33 -13.235 -13.091 3.474 1.00 29.54 N
ATOM 20 N1 A A 33 -14.071 -10.968 3.857 1.00 30.46 N
ATOM 21 C2 A A 33 -13.896 -9.641 3.872 1.00 29.57 C
ATOM 22 N3 A A 33 -12.806 -8.942 3.577 1.00 29.79 N
ATOM 23 C4 A A 33 -11.805 -9.766 3.208 1.00 30.55 C
ATOM 24 P A A 34 -6.937 -4.682 3.380 1.00 41.67 P
ATOM 25 OP1 A A 34 -5.715 -5.408 2.973 1.00 41.31 O
ATOM 26 OP2 A A 34 -7.046 -4.119 4.745 1.00 40.76 O
ATOM 27 O5' A A 34 -7.250 -3.529 2.323 1.00 42.65 O
TER
ATOM 1 O3' G B 62 -17.457 -16.024 5.195 1.00 33.89 O
ATOM 2 P C B 63 -15.886 -15.779 4.999 1.00 33.13 P
ATOM 3 OP1 C B 63 -15.294 -15.512 6.328 1.00 35.23 O
ATOM 4 OP2 C B 63 -15.688 -14.820 3.895 1.00 32.87 O
ATOM 5 O5' C B 63 -15.441 -17.229 4.507 1.00 33.27 O
ATOM 6 C5' C B 63 -14.178 -17.499 3.942 1.00 31.42 C
ATOM 7 C4' C B 63 -14.066 -19.003 3.791 1.00 31.26 C
ATOM 8 O4' C B 63 -13.884 -19.580 5.110 1.00 32.36 O
ATOM 9 C3' C B 63 -15.323 -19.686 3.265 1.00 31.16 C
ATOM 10 O3' C B 63 -15.369 -19.671 1.841 1.00 31.30 O
ATOM 11 C2' C B 63 -15.137 -21.096 3.814 1.00 30.47 C
ATOM 12 O2' C B 63 -14.186 -21.842 3.080 1.00 30.24 O
ATOM 13 C1' C B 63 -14.607 -20.795 5.212 1.00 29.96 C
ATOM 14 N1 C B 63 -15.689 -20.642 6.236 1.00 29.96 N
ATOM 15 C2 C B 63 -16.404 -21.770 6.657 1.00 29.26 C
ATOM 16 O2 C B 63 -16.134 -22.880 6.182 1.00 29.48 O
ATOM 17 N3 C B 63 -17.384 -21.619 7.576 1.00 29.15 N
ATOM 18 C4 C B 63 -17.661 -20.417 8.077 1.00 29.27 C
ATOM 19 N4 C B 63 -18.638 -20.334 8.987 1.00 28.37 N
ATOM 20 C5 C B 63 -16.947 -19.253 7.664 1.00 29.28 C
ATOM 21 C6 C B 63 -15.976 -19.412 6.754 1.00 29.11 C
ATOM 22 P C B 64 -16.774 -19.635 1.067 1.00 32.67 P
ATOM 23 OP1 C B 64 -16.492 -19.335 -0.353 1.00 32.50 O
ATOM 24 OP2 C B 64 -17.711 -18.782 1.833 1.00 32.82 O
ATOM 25 O5' C B 64 -17.309 -21.137 1.179 1.00 31.94 O
TER
Atoms:
OP1: (-6.146,-6.784,-1.031)
OP2: (-6.560,-9.305,-1.231)
C3': (-8.186,-6.658,2.194)
C1': (-9.996,-8.059,2.747)
C5': (-8.943,-6.504,-0.240)
O4': (-10.276,-7.536,1.472)
C8: (-9.875,-10.578,2.553)
O2': (-8.075,-8.069,4.185)
C6: (-13.049,-11.767,3.488)
C5: (-11.835,-11.146,3.139)
C4: (-11.805,-9.766,3.208)
P: (-7.040,-7.912,-1.364)
C4': (-9.343,-6.457,1.217)
C2': (-8.478,-8.012,2.834)
C2: (-13.896,-9.641,3.872)
N1: (-14.071,-10.968,3.857)
N3: (-12.806,-8.942,3.577)
N6: (-13.235,-13.091,3.474)
N7: (-10.612,-11.651,2.721)
N9: (-10.535,-9.411,2.829)
O5': (-8.381,-7.783,-0.507)
O3': (-8.204,-5.635,3.171)
OP2: (-6.560,-9.305,-1.231)
C3': (-8.186,-6.658,2.194)
C1': (-9.996,-8.059,2.747)
C5': (-8.943,-6.504,-0.240)
O4': (-10.276,-7.536,1.472)
C8: (-9.875,-10.578,2.553)
O2': (-8.075,-8.069,4.185)
C6: (-13.049,-11.767,3.488)
C5: (-11.835,-11.146,3.139)
C4: (-11.805,-9.766,3.208)
P: (-7.040,-7.912,-1.364)
C4': (-9.343,-6.457,1.217)
C2': (-8.478,-8.012,2.834)
C2: (-13.896,-9.641,3.872)
N1: (-14.071,-10.968,3.857)
N3: (-12.806,-8.942,3.577)
N6: (-13.235,-13.091,3.474)
N7: (-10.612,-11.651,2.721)
N9: (-10.535,-9.411,2.829)
O5': (-8.381,-7.783,-0.507)
O3': (-8.204,-5.635,3.171)
C2: (-16.404,-21.770,6.657)
OP1: (-15.294,-15.512,6.328)
OP2: (-15.688,-14.820,3.895)
C4: (-17.661,-20.417,8.077)
O5': (-15.441,-17.229,4.507)
C3': (-15.323,-19.686,3.265)
C1': (-14.607,-20.795,5.212)
O4': (-13.884,-19.580,5.110)
C5': (-14.178,-17.499,3.942)
P: (-15.886,-15.779,4.999)
O2: (-16.134,-22.880,6.182)
C4': (-14.066,-19.003,3.791)
C2': (-15.137,-21.096,3.814)
O2': (-14.186,-21.842,3.080)
N1: (-15.689,-20.642,6.236)
N3: (-17.384,-21.619,7.576)
N4: (-18.638,-20.334,8.987)
C6: (-15.976,-19.412,6.754)
C5: (-16.947,-19.253,7.664)
O3': (-15.369,-19.671,1.841)
OP1: (-15.294,-15.512,6.328)
OP2: (-15.688,-14.820,3.895)
C4: (-17.661,-20.417,8.077)
O5': (-15.441,-17.229,4.507)
C3': (-15.323,-19.686,3.265)
C1': (-14.607,-20.795,5.212)
O4': (-13.884,-19.580,5.110)
C5': (-14.178,-17.499,3.942)
P: (-15.886,-15.779,4.999)
O2: (-16.134,-22.880,6.182)
C4': (-14.066,-19.003,3.791)
C2': (-15.137,-21.096,3.814)
O2': (-14.186,-21.842,3.080)
N1: (-15.689,-20.642,6.236)
N3: (-17.384,-21.619,7.576)
N4: (-18.638,-20.334,8.987)
C6: (-15.976,-19.412,6.754)
C5: (-16.947,-19.253,7.664)
O3': (-15.369,-19.671,1.841)
Image (generated by PyMOL):