Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3NVI:E4:E5
Extra
PDB:
ATOM 1 O3' U A 3 -6.319 -12.906 -6.645 1.00 82.17 O
ATOM 2 P G A 4 -5.112 -12.689 -7.683 1.00 97.22 P
ATOM 3 OP1 G A 4 -5.649 -12.993 -9.034 1.00 99.76 O
ATOM 4 OP2 G A 4 -3.950 -13.472 -7.183 1.00 87.52 O
ATOM 5 O5' G A 4 -4.810 -11.132 -7.561 1.00 90.60 O
ATOM 6 C5' G A 4 -5.833 -10.213 -7.194 1.00 89.17 C
ATOM 7 C4' G A 4 -5.247 -8.985 -6.552 1.00 87.21 C
ATOM 8 O4' G A 4 -4.730 -9.352 -5.240 1.00 87.57 O
ATOM 9 C3' G A 4 -4.076 -8.374 -7.317 1.00 84.41 C
ATOM 10 O3' G A 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 11 C2' G A 4 -2.864 -8.956 -6.606 1.00 81.55 C
ATOM 12 O2' G A 4 -1.686 -8.182 -6.709 1.00 84.24 O
ATOM 13 C1' G A 4 -3.354 -9.051 -5.166 1.00 81.82 C
ATOM 14 N9 G A 4 -2.664 -10.094 -4.397 1.00 75.40 N
ATOM 15 C8 G A 4 -2.238 -11.301 -4.894 1.00 73.18 C
ATOM 16 N7 G A 4 -1.561 -12.004 -4.037 1.00 72.83 N
ATOM 17 C5 G A 4 -1.511 -11.187 -2.914 1.00 71.81 C
ATOM 18 C6 G A 4 -0.897 -11.413 -1.661 1.00 68.86 C
ATOM 19 O6 G A 4 -0.274 -12.421 -1.294 1.00 78.54 O
ATOM 20 N1 G A 4 -1.075 -10.332 -0.803 1.00 65.59 N
ATOM 21 C2 G A 4 -1.757 -9.179 -1.114 1.00 64.18 C
ATOM 22 N2 G A 4 -1.813 -8.260 -0.149 1.00 62.89 N
ATOM 23 N3 G A 4 -2.333 -8.946 -2.275 1.00 60.95 N
ATOM 24 C4 G A 4 -2.175 -9.995 -3.117 1.00 70.94 C
ATOM 25 P A A 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 26 OP1 A A 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 27 OP2 A A 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 28 O5' A A 5 -4.280 -4.582 -7.952 1.00 87.24 O
TER
ATOM 1 O3' G B 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 2 P A B 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 3 OP1 A B 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 4 OP2 A B 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 5 O5' A B 5 -4.280 -4.582 -7.952 1.00 87.24 O
ATOM 6 C5' A B 5 -5.622 -4.264 -7.625 1.00 77.19 C
ATOM 7 C4' A B 5 -5.694 -3.019 -6.784 1.00 84.83 C
ATOM 8 O4' A B 5 -5.167 -3.305 -5.458 1.00 81.64 O
ATOM 9 C3' A B 5 -4.890 -1.829 -7.312 1.00 81.72 C
ATOM 10 O3' A B 5 -5.554 -0.621 -6.965 1.00 93.82 O
ATOM 11 C2' A B 5 -3.609 -1.909 -6.504 1.00 77.01 C
ATOM 12 O2' A B 5 -2.924 -0.681 -6.389 1.00 75.94 O
ATOM 13 C1' A B 5 -4.141 -2.383 -5.157 1.00 75.34 C
ATOM 14 N9 A B 5 -3.144 -3.053 -4.332 1.00 68.21 N
ATOM 15 C8 A B 5 -2.577 -4.278 -4.540 1.00 71.02 C
ATOM 16 N7 A B 5 -1.689 -4.593 -3.634 1.00 66.99 N
ATOM 17 C5 A B 5 -1.688 -3.501 -2.794 1.00 64.65 C
ATOM 18 C6 A B 5 -0.966 -3.223 -1.646 1.00 65.42 C
ATOM 19 N6 A B 5 -0.090 -4.082 -1.150 1.00 71.40 N
ATOM 20 N1 A B 5 -1.168 -2.050 -1.023 1.00 68.46 N
ATOM 21 C2 A B 5 -2.062 -1.210 -1.547 1.00 69.31 C
ATOM 22 N3 A B 5 -2.809 -1.370 -2.630 1.00 67.38 N
ATOM 23 C4 A B 5 -2.569 -2.544 -3.210 1.00 65.36 C
ATOM 24 P C B 6 -6.742 -0.048 -7.874 1.00100.84 P
ATOM 25 OP1 C B 6 -6.754 -0.833 -9.137 1.00 92.58 O
ATOM 26 OP2 C B 6 -6.548 1.430 -7.938 1.00 77.21 O
ATOM 27 O5' C B 6 -8.031 -0.399 -7.008 1.00 87.25 O
TER
ATOM 2 P G A 4 -5.112 -12.689 -7.683 1.00 97.22 P
ATOM 3 OP1 G A 4 -5.649 -12.993 -9.034 1.00 99.76 O
ATOM 4 OP2 G A 4 -3.950 -13.472 -7.183 1.00 87.52 O
ATOM 5 O5' G A 4 -4.810 -11.132 -7.561 1.00 90.60 O
ATOM 6 C5' G A 4 -5.833 -10.213 -7.194 1.00 89.17 C
ATOM 7 C4' G A 4 -5.247 -8.985 -6.552 1.00 87.21 C
ATOM 8 O4' G A 4 -4.730 -9.352 -5.240 1.00 87.57 O
ATOM 9 C3' G A 4 -4.076 -8.374 -7.317 1.00 84.41 C
ATOM 10 O3' G A 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 11 C2' G A 4 -2.864 -8.956 -6.606 1.00 81.55 C
ATOM 12 O2' G A 4 -1.686 -8.182 -6.709 1.00 84.24 O
ATOM 13 C1' G A 4 -3.354 -9.051 -5.166 1.00 81.82 C
ATOM 14 N9 G A 4 -2.664 -10.094 -4.397 1.00 75.40 N
ATOM 15 C8 G A 4 -2.238 -11.301 -4.894 1.00 73.18 C
ATOM 16 N7 G A 4 -1.561 -12.004 -4.037 1.00 72.83 N
ATOM 17 C5 G A 4 -1.511 -11.187 -2.914 1.00 71.81 C
ATOM 18 C6 G A 4 -0.897 -11.413 -1.661 1.00 68.86 C
ATOM 19 O6 G A 4 -0.274 -12.421 -1.294 1.00 78.54 O
ATOM 20 N1 G A 4 -1.075 -10.332 -0.803 1.00 65.59 N
ATOM 21 C2 G A 4 -1.757 -9.179 -1.114 1.00 64.18 C
ATOM 22 N2 G A 4 -1.813 -8.260 -0.149 1.00 62.89 N
ATOM 23 N3 G A 4 -2.333 -8.946 -2.275 1.00 60.95 N
ATOM 24 C4 G A 4 -2.175 -9.995 -3.117 1.00 70.94 C
ATOM 25 P A A 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 26 OP1 A A 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 27 OP2 A A 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 28 O5' A A 5 -4.280 -4.582 -7.952 1.00 87.24 O
TER
ATOM 1 O3' G B 4 -4.085 -6.955 -7.180 1.00 90.49 O
ATOM 2 P A B 5 -3.888 -6.029 -8.484 1.00 97.97 P
ATOM 3 OP1 A B 5 -4.890 -6.493 -9.499 1.00 83.09 O
ATOM 4 OP2 A B 5 -2.432 -6.062 -8.835 1.00 85.42 O
ATOM 5 O5' A B 5 -4.280 -4.582 -7.952 1.00 87.24 O
ATOM 6 C5' A B 5 -5.622 -4.264 -7.625 1.00 77.19 C
ATOM 7 C4' A B 5 -5.694 -3.019 -6.784 1.00 84.83 C
ATOM 8 O4' A B 5 -5.167 -3.305 -5.458 1.00 81.64 O
ATOM 9 C3' A B 5 -4.890 -1.829 -7.312 1.00 81.72 C
ATOM 10 O3' A B 5 -5.554 -0.621 -6.965 1.00 93.82 O
ATOM 11 C2' A B 5 -3.609 -1.909 -6.504 1.00 77.01 C
ATOM 12 O2' A B 5 -2.924 -0.681 -6.389 1.00 75.94 O
ATOM 13 C1' A B 5 -4.141 -2.383 -5.157 1.00 75.34 C
ATOM 14 N9 A B 5 -3.144 -3.053 -4.332 1.00 68.21 N
ATOM 15 C8 A B 5 -2.577 -4.278 -4.540 1.00 71.02 C
ATOM 16 N7 A B 5 -1.689 -4.593 -3.634 1.00 66.99 N
ATOM 17 C5 A B 5 -1.688 -3.501 -2.794 1.00 64.65 C
ATOM 18 C6 A B 5 -0.966 -3.223 -1.646 1.00 65.42 C
ATOM 19 N6 A B 5 -0.090 -4.082 -1.150 1.00 71.40 N
ATOM 20 N1 A B 5 -1.168 -2.050 -1.023 1.00 68.46 N
ATOM 21 C2 A B 5 -2.062 -1.210 -1.547 1.00 69.31 C
ATOM 22 N3 A B 5 -2.809 -1.370 -2.630 1.00 67.38 N
ATOM 23 C4 A B 5 -2.569 -2.544 -3.210 1.00 65.36 C
ATOM 24 P C B 6 -6.742 -0.048 -7.874 1.00100.84 P
ATOM 25 OP1 C B 6 -6.754 -0.833 -9.137 1.00 92.58 O
ATOM 26 OP2 C B 6 -6.548 1.430 -7.938 1.00 77.21 O
ATOM 27 O5' C B 6 -8.031 -0.399 -7.008 1.00 87.25 O
TER
Atoms:
OP1: (-5.649,-12.993,-9.034)
OP2: (-3.950,-13.472,-7.183)
C3': (-4.076,-8.374,-7.317)
C1': (-3.354,-9.051,-5.166)
C5': (-5.833,-10.213,-7.194)
O6: (-0.274,-12.421,-1.294)
O4': (-4.730,-9.352,-5.240)
C8: (-2.238,-11.301,-4.894)
C2: (-1.757,-9.179,-1.114)
C6: (-0.897,-11.413,-1.661)
C5: (-1.511,-11.187,-2.914)
C4: (-2.175,-9.995,-3.117)
P: (-5.112,-12.689,-7.683)
C4': (-5.247,-8.985,-6.552)
C2': (-2.864,-8.956,-6.606)
O2': (-1.686,-8.182,-6.709)
N1: (-1.075,-10.332,-0.803)
N2: (-1.813,-8.260,-0.149)
N3: (-2.333,-8.946,-2.275)
N7: (-1.561,-12.004,-4.037)
N9: (-2.664,-10.094,-4.397)
O5': (-4.810,-11.132,-7.561)
O3': (-4.085,-6.955,-7.180)
OP2: (-3.950,-13.472,-7.183)
C3': (-4.076,-8.374,-7.317)
C1': (-3.354,-9.051,-5.166)
C5': (-5.833,-10.213,-7.194)
O6: (-0.274,-12.421,-1.294)
O4': (-4.730,-9.352,-5.240)
C8: (-2.238,-11.301,-4.894)
C2: (-1.757,-9.179,-1.114)
C6: (-0.897,-11.413,-1.661)
C5: (-1.511,-11.187,-2.914)
C4: (-2.175,-9.995,-3.117)
P: (-5.112,-12.689,-7.683)
C4': (-5.247,-8.985,-6.552)
C2': (-2.864,-8.956,-6.606)
O2': (-1.686,-8.182,-6.709)
N1: (-1.075,-10.332,-0.803)
N2: (-1.813,-8.260,-0.149)
N3: (-2.333,-8.946,-2.275)
N7: (-1.561,-12.004,-4.037)
N9: (-2.664,-10.094,-4.397)
O5': (-4.810,-11.132,-7.561)
O3': (-4.085,-6.955,-7.180)
OP1: (-4.890,-6.493,-9.499)
OP2: (-2.432,-6.062,-8.835)
C3': (-4.890,-1.829,-7.312)
C1': (-4.141,-2.383,-5.157)
C5': (-5.622,-4.264,-7.625)
O4': (-5.167,-3.305,-5.458)
C8: (-2.577,-4.278,-4.540)
O2': (-2.924,-0.681,-6.389)
C6: (-0.966,-3.223,-1.646)
C5: (-1.688,-3.501,-2.794)
C4: (-2.569,-2.544,-3.210)
P: (-3.888,-6.029,-8.484)
C4': (-5.694,-3.019,-6.784)
C2': (-3.609,-1.909,-6.504)
C2: (-2.062,-1.210,-1.547)
N1: (-1.168,-2.050,-1.023)
N3: (-2.809,-1.370,-2.630)
N6: (-0.090,-4.082,-1.150)
N7: (-1.689,-4.593,-3.634)
N9: (-3.144,-3.053,-4.332)
O5': (-4.280,-4.582,-7.952)
O3': (-5.554,-0.621,-6.965)
OP2: (-2.432,-6.062,-8.835)
C3': (-4.890,-1.829,-7.312)
C1': (-4.141,-2.383,-5.157)
C5': (-5.622,-4.264,-7.625)
O4': (-5.167,-3.305,-5.458)
C8: (-2.577,-4.278,-4.540)
O2': (-2.924,-0.681,-6.389)
C6: (-0.966,-3.223,-1.646)
C5: (-1.688,-3.501,-2.794)
C4: (-2.569,-2.544,-3.210)
P: (-3.888,-6.029,-8.484)
C4': (-5.694,-3.019,-6.784)
C2': (-3.609,-1.909,-6.504)
C2: (-2.062,-1.210,-1.547)
N1: (-1.168,-2.050,-1.023)
N3: (-2.809,-1.370,-2.630)
N6: (-0.090,-4.082,-1.150)
N7: (-1.689,-4.593,-3.634)
N9: (-3.144,-3.053,-4.332)
O5': (-4.280,-4.582,-7.952)
O3': (-5.554,-0.621,-6.965)
Image (generated by PyMOL):