Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1K9M:A580:A581
Extra
PDB:
ATOM 1 O3' A A 579 -6.215 103.353 106.581 1.00 60.00 O
ATOM 2 P G A 580 -6.106 103.889 105.064 1.00 60.37 P
ATOM 3 OP1 G A 580 -5.715 105.324 105.108 1.00 58.24 O
ATOM 4 OP2 G A 580 -7.312 103.474 104.305 1.00 58.70 O
ATOM 5 O5' G A 580 -4.910 103.046 104.437 1.00 61.49 O
ATOM 6 C5' G A 580 -3.542 103.238 104.848 1.00 60.08 C
ATOM 7 C4' G A 580 -2.666 102.216 104.164 1.00 58.76 C
ATOM 8 O4' G A 580 -3.093 100.879 104.551 1.00 58.08 O
ATOM 9 C3' G A 580 -2.788 102.202 102.650 1.00 58.32 C
ATOM 10 O3' G A 580 -1.931 103.160 102.055 1.00 57.29 O
ATOM 11 C2' G A 580 -2.323 100.797 102.299 1.00 58.10 C
ATOM 12 O2' G A 580 -0.918 100.693 102.238 1.00 60.89 O
ATOM 13 C1' G A 580 -2.862 99.981 103.477 1.00 57.77 C
ATOM 14 N9 G A 580 -4.108 99.296 103.148 1.00 57.61 N
ATOM 15 C8 G A 580 -5.386 99.773 103.333 1.00 58.82 C
ATOM 16 N7 G A 580 -6.310 98.947 102.916 1.00 58.72 N
ATOM 17 C5 G A 580 -5.605 97.854 102.429 1.00 57.23 C
ATOM 18 C6 G A 580 -6.072 96.652 101.853 1.00 57.49 C
ATOM 19 O6 G A 580 -7.241 96.295 101.659 1.00 59.20 O
ATOM 20 N1 G A 580 -5.022 95.818 101.490 1.00 56.81 N
ATOM 21 C2 G A 580 -3.693 96.097 101.665 1.00 56.19 C
ATOM 22 N2 G A 580 -2.842 95.163 101.231 1.00 56.19 N
ATOM 23 N3 G A 580 -3.237 97.210 102.218 1.00 56.23 N
ATOM 24 C4 G A 580 -4.242 98.045 102.570 1.00 57.28 C
ATOM 25 P A A 581 -2.527 104.541 101.502 1.00 59.09 P
ATOM 26 OP1 A A 581 -2.412 105.542 102.585 1.00 57.15 O
ATOM 27 OP2 A A 581 -3.842 104.314 100.846 1.00 58.07 O
ATOM 28 O5' A A 581 -1.507 104.949 100.357 1.00 57.87 O
TER
ATOM 1 O3' G B 580 -1.931 103.160 102.055 1.00 57.29 O
ATOM 2 P A B 581 -2.527 104.541 101.502 1.00 59.09 P
ATOM 3 OP1 A B 581 -2.412 105.542 102.585 1.00 57.15 O
ATOM 4 OP2 A B 581 -3.842 104.314 100.846 1.00 58.07 O
ATOM 5 O5' A B 581 -1.507 104.949 100.357 1.00 57.87 O
ATOM 6 C5' A B 581 -0.174 105.392 100.651 1.00 56.58 C
ATOM 7 C4' A B 581 0.716 105.071 99.482 1.00 57.16 C
ATOM 8 O4' A B 581 0.833 103.629 99.356 1.00 59.91 O
ATOM 9 C3' A B 581 0.161 105.499 98.134 1.00 56.05 C
ATOM 10 O3' A B 581 0.407 106.872 97.871 1.00 50.81 O
ATOM 11 C2' A B 581 0.886 104.570 97.176 1.00 58.58 C
ATOM 12 O2' A B 581 2.207 104.993 96.949 1.00 60.38 O
ATOM 13 C1' A B 581 0.916 103.270 97.984 1.00 61.13 C
ATOM 14 N9 A B 581 -0.199 102.374 97.672 1.00 64.99 N
ATOM 15 C8 A B 581 -1.281 102.073 98.460 1.00 65.88 C
ATOM 16 N7 A B 581 -2.149 101.271 97.888 1.00 68.06 N
ATOM 17 C5 A B 581 -1.601 101.020 96.641 1.00 69.08 C
ATOM 18 C6 A B 581 -2.052 100.256 95.548 1.00 70.30 C
ATOM 19 N6 A B 581 -3.215 99.597 95.533 1.00 70.64 N
ATOM 20 N1 A B 581 -1.263 100.201 94.454 1.00 71.60 N
ATOM 21 C2 A B 581 -0.107 100.879 94.463 1.00 71.85 C
ATOM 22 N3 A B 581 0.421 101.643 95.424 1.00 70.49 N
ATOM 23 C4 A B 581 -0.386 101.674 96.500 1.00 68.05 C
ATOM 24 P C B 582 -0.696 107.733 97.086 1.00 47.78 P
ATOM 25 OP1 C B 582 -0.142 109.085 96.871 1.00 45.45 O
ATOM 26 OP2 C B 582 -1.980 107.577 97.812 1.00 48.37 O
ATOM 27 O5' C B 582 -0.810 107.006 95.671 1.00 46.62 O
TER
ATOM 2 P G A 580 -6.106 103.889 105.064 1.00 60.37 P
ATOM 3 OP1 G A 580 -5.715 105.324 105.108 1.00 58.24 O
ATOM 4 OP2 G A 580 -7.312 103.474 104.305 1.00 58.70 O
ATOM 5 O5' G A 580 -4.910 103.046 104.437 1.00 61.49 O
ATOM 6 C5' G A 580 -3.542 103.238 104.848 1.00 60.08 C
ATOM 7 C4' G A 580 -2.666 102.216 104.164 1.00 58.76 C
ATOM 8 O4' G A 580 -3.093 100.879 104.551 1.00 58.08 O
ATOM 9 C3' G A 580 -2.788 102.202 102.650 1.00 58.32 C
ATOM 10 O3' G A 580 -1.931 103.160 102.055 1.00 57.29 O
ATOM 11 C2' G A 580 -2.323 100.797 102.299 1.00 58.10 C
ATOM 12 O2' G A 580 -0.918 100.693 102.238 1.00 60.89 O
ATOM 13 C1' G A 580 -2.862 99.981 103.477 1.00 57.77 C
ATOM 14 N9 G A 580 -4.108 99.296 103.148 1.00 57.61 N
ATOM 15 C8 G A 580 -5.386 99.773 103.333 1.00 58.82 C
ATOM 16 N7 G A 580 -6.310 98.947 102.916 1.00 58.72 N
ATOM 17 C5 G A 580 -5.605 97.854 102.429 1.00 57.23 C
ATOM 18 C6 G A 580 -6.072 96.652 101.853 1.00 57.49 C
ATOM 19 O6 G A 580 -7.241 96.295 101.659 1.00 59.20 O
ATOM 20 N1 G A 580 -5.022 95.818 101.490 1.00 56.81 N
ATOM 21 C2 G A 580 -3.693 96.097 101.665 1.00 56.19 C
ATOM 22 N2 G A 580 -2.842 95.163 101.231 1.00 56.19 N
ATOM 23 N3 G A 580 -3.237 97.210 102.218 1.00 56.23 N
ATOM 24 C4 G A 580 -4.242 98.045 102.570 1.00 57.28 C
ATOM 25 P A A 581 -2.527 104.541 101.502 1.00 59.09 P
ATOM 26 OP1 A A 581 -2.412 105.542 102.585 1.00 57.15 O
ATOM 27 OP2 A A 581 -3.842 104.314 100.846 1.00 58.07 O
ATOM 28 O5' A A 581 -1.507 104.949 100.357 1.00 57.87 O
TER
ATOM 1 O3' G B 580 -1.931 103.160 102.055 1.00 57.29 O
ATOM 2 P A B 581 -2.527 104.541 101.502 1.00 59.09 P
ATOM 3 OP1 A B 581 -2.412 105.542 102.585 1.00 57.15 O
ATOM 4 OP2 A B 581 -3.842 104.314 100.846 1.00 58.07 O
ATOM 5 O5' A B 581 -1.507 104.949 100.357 1.00 57.87 O
ATOM 6 C5' A B 581 -0.174 105.392 100.651 1.00 56.58 C
ATOM 7 C4' A B 581 0.716 105.071 99.482 1.00 57.16 C
ATOM 8 O4' A B 581 0.833 103.629 99.356 1.00 59.91 O
ATOM 9 C3' A B 581 0.161 105.499 98.134 1.00 56.05 C
ATOM 10 O3' A B 581 0.407 106.872 97.871 1.00 50.81 O
ATOM 11 C2' A B 581 0.886 104.570 97.176 1.00 58.58 C
ATOM 12 O2' A B 581 2.207 104.993 96.949 1.00 60.38 O
ATOM 13 C1' A B 581 0.916 103.270 97.984 1.00 61.13 C
ATOM 14 N9 A B 581 -0.199 102.374 97.672 1.00 64.99 N
ATOM 15 C8 A B 581 -1.281 102.073 98.460 1.00 65.88 C
ATOM 16 N7 A B 581 -2.149 101.271 97.888 1.00 68.06 N
ATOM 17 C5 A B 581 -1.601 101.020 96.641 1.00 69.08 C
ATOM 18 C6 A B 581 -2.052 100.256 95.548 1.00 70.30 C
ATOM 19 N6 A B 581 -3.215 99.597 95.533 1.00 70.64 N
ATOM 20 N1 A B 581 -1.263 100.201 94.454 1.00 71.60 N
ATOM 21 C2 A B 581 -0.107 100.879 94.463 1.00 71.85 C
ATOM 22 N3 A B 581 0.421 101.643 95.424 1.00 70.49 N
ATOM 23 C4 A B 581 -0.386 101.674 96.500 1.00 68.05 C
ATOM 24 P C B 582 -0.696 107.733 97.086 1.00 47.78 P
ATOM 25 OP1 C B 582 -0.142 109.085 96.871 1.00 45.45 O
ATOM 26 OP2 C B 582 -1.980 107.577 97.812 1.00 48.37 O
ATOM 27 O5' C B 582 -0.810 107.006 95.671 1.00 46.62 O
TER
Atoms:
OP1: (-5.715,105.324,105.108)
OP2: (-7.312,103.474,104.305)
C3': (-2.788,102.202,102.650)
C1': (-2.862,99.981,103.477)
C5': (-3.542,103.238,104.848)
O6: (-7.241,96.295,101.659)
O4': (-3.093,100.879,104.551)
C8: (-5.386,99.773,103.333)
C2: (-3.693,96.097,101.665)
C6: (-6.072,96.652,101.853)
C5: (-5.605,97.854,102.429)
C4: (-4.242,98.045,102.570)
P: (-6.106,103.889,105.064)
C4': (-2.666,102.216,104.164)
C2': (-2.323,100.797,102.299)
O2': (-0.918,100.693,102.238)
N1: (-5.022,95.818,101.490)
N2: (-2.842,95.163,101.231)
N3: (-3.237,97.210,102.218)
N7: (-6.310,98.947,102.916)
N9: (-4.108,99.296,103.148)
O5': (-4.910,103.046,104.437)
O3': (-1.931,103.160,102.055)
OP2: (-7.312,103.474,104.305)
C3': (-2.788,102.202,102.650)
C1': (-2.862,99.981,103.477)
C5': (-3.542,103.238,104.848)
O6: (-7.241,96.295,101.659)
O4': (-3.093,100.879,104.551)
C8: (-5.386,99.773,103.333)
C2: (-3.693,96.097,101.665)
C6: (-6.072,96.652,101.853)
C5: (-5.605,97.854,102.429)
C4: (-4.242,98.045,102.570)
P: (-6.106,103.889,105.064)
C4': (-2.666,102.216,104.164)
C2': (-2.323,100.797,102.299)
O2': (-0.918,100.693,102.238)
N1: (-5.022,95.818,101.490)
N2: (-2.842,95.163,101.231)
N3: (-3.237,97.210,102.218)
N7: (-6.310,98.947,102.916)
N9: (-4.108,99.296,103.148)
O5': (-4.910,103.046,104.437)
O3': (-1.931,103.160,102.055)
OP1: (-2.412,105.542,102.585)
OP2: (-3.842,104.314,100.846)
C3': (0.161,105.499,98.134)
C1': (0.916,103.270,97.984)
C5': (-0.174,105.392,100.651)
O4': (0.833,103.629,99.356)
C8: (-1.281,102.073,98.460)
O2': (2.207,104.993,96.949)
C6: (-2.052,100.256,95.548)
C5: (-1.601,101.020,96.641)
C4: (-0.386,101.674,96.500)
P: (-2.527,104.541,101.502)
C4': (0.716,105.071,99.482)
C2': (0.886,104.570,97.176)
C2: (-0.107,100.879,94.463)
N1: (-1.263,100.201,94.454)
N3: (0.421,101.643,95.424)
N6: (-3.215,99.597,95.533)
N7: (-2.149,101.271,97.888)
N9: (-0.199,102.374,97.672)
O5': (-1.507,104.949,100.357)
O3': (0.407,106.872,97.871)
OP2: (-3.842,104.314,100.846)
C3': (0.161,105.499,98.134)
C1': (0.916,103.270,97.984)
C5': (-0.174,105.392,100.651)
O4': (0.833,103.629,99.356)
C8: (-1.281,102.073,98.460)
O2': (2.207,104.993,96.949)
C6: (-2.052,100.256,95.548)
C5: (-1.601,101.020,96.641)
C4: (-0.386,101.674,96.500)
P: (-2.527,104.541,101.502)
C4': (0.716,105.071,99.482)
C2': (0.886,104.570,97.176)
C2: (-0.107,100.879,94.463)
N1: (-1.263,100.201,94.454)
N3: (0.421,101.643,95.424)
N6: (-3.215,99.597,95.533)
N7: (-2.149,101.271,97.888)
N9: (-0.199,102.374,97.672)
O5': (-1.507,104.949,100.357)
O3': (0.407,106.872,97.871)
Image (generated by PyMOL):