Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A580:A581
Extra
PDB:
ATOM 1 O3' A A 579 -6.079 103.663 106.674 1.00 62.83 O
ATOM 2 P G A 580 -5.994 104.169 105.152 1.00 62.44 P
ATOM 3 OP1 G A 580 -5.637 105.614 105.133 1.00 61.56 O
ATOM 4 OP2 G A 580 -7.219 103.707 104.459 1.00 61.89 O
ATOM 5 O5' G A 580 -4.799 103.326 104.527 1.00 63.27 O
ATOM 6 C5' G A 580 -3.436 103.519 104.936 1.00 60.68 C
ATOM 7 C4' G A 580 -2.566 102.502 104.252 1.00 59.33 C
ATOM 8 O4' G A 580 -2.987 101.168 104.648 1.00 59.36 O
ATOM 9 C3' G A 580 -2.698 102.473 102.740 1.00 58.64 C
ATOM 10 O3' G A 580 -1.853 103.433 102.136 1.00 56.62 O
ATOM 11 C2' G A 580 -2.202 101.074 102.409 1.00 58.98 C
ATOM 12 O2' G A 580 -0.793 101.002 102.451 1.00 62.01 O
ATOM 13 C1' G A 580 -2.769 100.265 103.575 1.00 59.14 C
ATOM 14 N9 G A 580 -4.024 99.595 103.242 1.00 59.88 N
ATOM 15 C8 G A 580 -5.301 100.076 103.428 1.00 60.93 C
ATOM 16 N7 G A 580 -6.230 99.246 103.023 1.00 61.32 N
ATOM 17 C5 G A 580 -5.527 98.150 102.543 1.00 59.79 C
ATOM 18 C6 G A 580 -5.991 96.940 101.982 1.00 59.77 C
ATOM 19 O6 G A 580 -7.159 96.559 101.817 1.00 61.09 O
ATOM 20 N1 G A 580 -4.935 96.119 101.601 1.00 59.42 N
ATOM 21 C2 G A 580 -3.606 96.410 101.756 1.00 59.37 C
ATOM 22 N2 G A 580 -2.746 95.491 101.301 1.00 58.91 N
ATOM 23 N3 G A 580 -3.156 97.521 102.306 1.00 59.44 N
ATOM 24 C4 G A 580 -4.163 98.347 102.667 1.00 59.68 C
ATOM 25 P A A 581 -2.465 104.787 101.540 1.00 57.05 P
ATOM 26 OP1 A A 581 -2.359 105.823 102.597 1.00 54.42 O
ATOM 27 OP2 A A 581 -3.771 104.538 100.891 1.00 56.88 O
ATOM 28 O5' A A 581 -1.450 105.158 100.375 1.00 56.79 O
TER
ATOM 1 O3' G B 580 -1.853 103.433 102.136 1.00 56.62 O
ATOM 2 P A B 581 -2.465 104.787 101.540 1.00 57.05 P
ATOM 3 OP1 A B 581 -2.359 105.823 102.597 1.00 54.42 O
ATOM 4 OP2 A B 581 -3.771 104.538 100.891 1.00 56.88 O
ATOM 5 O5' A B 581 -1.450 105.158 100.375 1.00 56.79 O
ATOM 6 C5' A B 581 -0.150 105.708 100.649 1.00 57.53 C
ATOM 7 C4' A B 581 0.773 105.384 99.510 1.00 58.22 C
ATOM 8 O4' A B 581 0.878 103.941 99.400 1.00 60.76 O
ATOM 9 C3' A B 581 0.249 105.810 98.152 1.00 57.53 C
ATOM 10 O3' A B 581 0.548 107.177 97.891 1.00 53.45 O
ATOM 11 C2' A B 581 0.978 104.861 97.217 1.00 59.84 C
ATOM 12 O2' A B 581 2.307 105.283 97.025 1.00 60.83 O
ATOM 13 C1' A B 581 0.979 103.565 98.036 1.00 62.29 C
ATOM 14 N9 A B 581 -0.123 102.650 97.732 1.00 65.68 N
ATOM 15 C8 A B 581 -1.185 102.338 98.542 1.00 67.41 C
ATOM 16 N7 A B 581 -2.058 101.532 97.986 1.00 70.00 N
ATOM 17 C5 A B 581 -1.535 101.290 96.727 1.00 69.45 C
ATOM 18 C6 A B 581 -2.008 100.535 95.638 1.00 70.14 C
ATOM 19 N6 A B 581 -3.179 99.892 95.633 1.00 69.58 N
ATOM 20 N1 A B 581 -1.233 100.475 94.536 1.00 71.06 N
ATOM 21 C2 A B 581 -0.074 101.153 94.531 1.00 71.69 C
ATOM 22 N3 A B 581 0.465 101.919 95.483 1.00 69.91 N
ATOM 23 C4 A B 581 -0.325 101.947 96.567 1.00 68.14 C
ATOM 24 P C B 582 -0.520 108.088 97.123 1.00 50.61 P
ATOM 25 OP1 C B 582 0.083 109.424 96.914 1.00 50.28 O
ATOM 26 OP2 C B 582 -1.775 107.976 97.889 1.00 51.29 O
ATOM 27 O5' C B 582 -0.665 107.362 95.710 1.00 49.64 O
TER
ATOM 2 P G A 580 -5.994 104.169 105.152 1.00 62.44 P
ATOM 3 OP1 G A 580 -5.637 105.614 105.133 1.00 61.56 O
ATOM 4 OP2 G A 580 -7.219 103.707 104.459 1.00 61.89 O
ATOM 5 O5' G A 580 -4.799 103.326 104.527 1.00 63.27 O
ATOM 6 C5' G A 580 -3.436 103.519 104.936 1.00 60.68 C
ATOM 7 C4' G A 580 -2.566 102.502 104.252 1.00 59.33 C
ATOM 8 O4' G A 580 -2.987 101.168 104.648 1.00 59.36 O
ATOM 9 C3' G A 580 -2.698 102.473 102.740 1.00 58.64 C
ATOM 10 O3' G A 580 -1.853 103.433 102.136 1.00 56.62 O
ATOM 11 C2' G A 580 -2.202 101.074 102.409 1.00 58.98 C
ATOM 12 O2' G A 580 -0.793 101.002 102.451 1.00 62.01 O
ATOM 13 C1' G A 580 -2.769 100.265 103.575 1.00 59.14 C
ATOM 14 N9 G A 580 -4.024 99.595 103.242 1.00 59.88 N
ATOM 15 C8 G A 580 -5.301 100.076 103.428 1.00 60.93 C
ATOM 16 N7 G A 580 -6.230 99.246 103.023 1.00 61.32 N
ATOM 17 C5 G A 580 -5.527 98.150 102.543 1.00 59.79 C
ATOM 18 C6 G A 580 -5.991 96.940 101.982 1.00 59.77 C
ATOM 19 O6 G A 580 -7.159 96.559 101.817 1.00 61.09 O
ATOM 20 N1 G A 580 -4.935 96.119 101.601 1.00 59.42 N
ATOM 21 C2 G A 580 -3.606 96.410 101.756 1.00 59.37 C
ATOM 22 N2 G A 580 -2.746 95.491 101.301 1.00 58.91 N
ATOM 23 N3 G A 580 -3.156 97.521 102.306 1.00 59.44 N
ATOM 24 C4 G A 580 -4.163 98.347 102.667 1.00 59.68 C
ATOM 25 P A A 581 -2.465 104.787 101.540 1.00 57.05 P
ATOM 26 OP1 A A 581 -2.359 105.823 102.597 1.00 54.42 O
ATOM 27 OP2 A A 581 -3.771 104.538 100.891 1.00 56.88 O
ATOM 28 O5' A A 581 -1.450 105.158 100.375 1.00 56.79 O
TER
ATOM 1 O3' G B 580 -1.853 103.433 102.136 1.00 56.62 O
ATOM 2 P A B 581 -2.465 104.787 101.540 1.00 57.05 P
ATOM 3 OP1 A B 581 -2.359 105.823 102.597 1.00 54.42 O
ATOM 4 OP2 A B 581 -3.771 104.538 100.891 1.00 56.88 O
ATOM 5 O5' A B 581 -1.450 105.158 100.375 1.00 56.79 O
ATOM 6 C5' A B 581 -0.150 105.708 100.649 1.00 57.53 C
ATOM 7 C4' A B 581 0.773 105.384 99.510 1.00 58.22 C
ATOM 8 O4' A B 581 0.878 103.941 99.400 1.00 60.76 O
ATOM 9 C3' A B 581 0.249 105.810 98.152 1.00 57.53 C
ATOM 10 O3' A B 581 0.548 107.177 97.891 1.00 53.45 O
ATOM 11 C2' A B 581 0.978 104.861 97.217 1.00 59.84 C
ATOM 12 O2' A B 581 2.307 105.283 97.025 1.00 60.83 O
ATOM 13 C1' A B 581 0.979 103.565 98.036 1.00 62.29 C
ATOM 14 N9 A B 581 -0.123 102.650 97.732 1.00 65.68 N
ATOM 15 C8 A B 581 -1.185 102.338 98.542 1.00 67.41 C
ATOM 16 N7 A B 581 -2.058 101.532 97.986 1.00 70.00 N
ATOM 17 C5 A B 581 -1.535 101.290 96.727 1.00 69.45 C
ATOM 18 C6 A B 581 -2.008 100.535 95.638 1.00 70.14 C
ATOM 19 N6 A B 581 -3.179 99.892 95.633 1.00 69.58 N
ATOM 20 N1 A B 581 -1.233 100.475 94.536 1.00 71.06 N
ATOM 21 C2 A B 581 -0.074 101.153 94.531 1.00 71.69 C
ATOM 22 N3 A B 581 0.465 101.919 95.483 1.00 69.91 N
ATOM 23 C4 A B 581 -0.325 101.947 96.567 1.00 68.14 C
ATOM 24 P C B 582 -0.520 108.088 97.123 1.00 50.61 P
ATOM 25 OP1 C B 582 0.083 109.424 96.914 1.00 50.28 O
ATOM 26 OP2 C B 582 -1.775 107.976 97.889 1.00 51.29 O
ATOM 27 O5' C B 582 -0.665 107.362 95.710 1.00 49.64 O
TER
Atoms:
OP1: (-5.637,105.614,105.133)
OP2: (-7.219,103.707,104.459)
C3': (-2.698,102.473,102.740)
C1': (-2.769,100.265,103.575)
C5': (-3.436,103.519,104.936)
O6: (-7.159,96.559,101.817)
O4': (-2.987,101.168,104.648)
C8: (-5.301,100.076,103.428)
C2: (-3.606,96.410,101.756)
C6: (-5.991,96.940,101.982)
C5: (-5.527,98.150,102.543)
C4: (-4.163,98.347,102.667)
P: (-5.994,104.169,105.152)
C4': (-2.566,102.502,104.252)
C2': (-2.202,101.074,102.409)
O2': (-0.793,101.002,102.451)
N1: (-4.935,96.119,101.601)
N2: (-2.746,95.491,101.301)
N3: (-3.156,97.521,102.306)
N7: (-6.230,99.246,103.023)
N9: (-4.024,99.595,103.242)
O5': (-4.799,103.326,104.527)
O3': (-1.853,103.433,102.136)
OP2: (-7.219,103.707,104.459)
C3': (-2.698,102.473,102.740)
C1': (-2.769,100.265,103.575)
C5': (-3.436,103.519,104.936)
O6: (-7.159,96.559,101.817)
O4': (-2.987,101.168,104.648)
C8: (-5.301,100.076,103.428)
C2: (-3.606,96.410,101.756)
C6: (-5.991,96.940,101.982)
C5: (-5.527,98.150,102.543)
C4: (-4.163,98.347,102.667)
P: (-5.994,104.169,105.152)
C4': (-2.566,102.502,104.252)
C2': (-2.202,101.074,102.409)
O2': (-0.793,101.002,102.451)
N1: (-4.935,96.119,101.601)
N2: (-2.746,95.491,101.301)
N3: (-3.156,97.521,102.306)
N7: (-6.230,99.246,103.023)
N9: (-4.024,99.595,103.242)
O5': (-4.799,103.326,104.527)
O3': (-1.853,103.433,102.136)
OP1: (-2.359,105.823,102.597)
OP2: (-3.771,104.538,100.891)
C3': (0.249,105.810,98.152)
C1': (0.979,103.565,98.036)
C5': (-0.150,105.708,100.649)
O4': (0.878,103.941,99.400)
C8: (-1.185,102.338,98.542)
O2': (2.307,105.283,97.025)
C6: (-2.008,100.535,95.638)
C5: (-1.535,101.290,96.727)
C4: (-0.325,101.947,96.567)
P: (-2.465,104.787,101.540)
C4': (0.773,105.384,99.510)
C2': (0.978,104.861,97.217)
C2: (-0.074,101.153,94.531)
N1: (-1.233,100.475,94.536)
N3: (0.465,101.919,95.483)
N6: (-3.179,99.892,95.633)
N7: (-2.058,101.532,97.986)
N9: (-0.123,102.650,97.732)
O5': (-1.450,105.158,100.375)
O3': (0.548,107.177,97.891)
OP2: (-3.771,104.538,100.891)
C3': (0.249,105.810,98.152)
C1': (0.979,103.565,98.036)
C5': (-0.150,105.708,100.649)
O4': (0.878,103.941,99.400)
C8: (-1.185,102.338,98.542)
O2': (2.307,105.283,97.025)
C6: (-2.008,100.535,95.638)
C5: (-1.535,101.290,96.727)
C4: (-0.325,101.947,96.567)
P: (-2.465,104.787,101.540)
C4': (0.773,105.384,99.510)
C2': (0.978,104.861,97.217)
C2: (-0.074,101.153,94.531)
N1: (-1.233,100.475,94.536)
N3: (0.465,101.919,95.483)
N6: (-3.179,99.892,95.633)
N7: (-2.058,101.532,97.986)
N9: (-0.123,102.650,97.732)
O5': (-1.450,105.158,100.375)
O3': (0.548,107.177,97.891)
Image (generated by PyMOL):