Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1NJI:A580:A581
Extra
PDB:
ATOM 1 O3' A A 579 -6.347 103.398 106.180 1.00 53.29 O
ATOM 2 P G A 580 -6.249 103.880 104.648 1.00 54.62 P
ATOM 3 OP1 G A 580 -5.903 105.328 104.646 1.00 53.64 O
ATOM 4 OP2 G A 580 -7.455 103.410 103.920 1.00 54.01 O
ATOM 5 O5' G A 580 -5.049 103.026 104.044 1.00 54.26 O
ATOM 6 C5' G A 580 -3.673 103.301 104.366 1.00 51.83 C
ATOM 7 C4' G A 580 -2.794 102.286 103.680 1.00 50.76 C
ATOM 8 O4' G A 580 -3.172 100.959 104.140 1.00 50.36 O
ATOM 9 C3' G A 580 -2.979 102.193 102.170 1.00 51.09 C
ATOM 10 O3' G A 580 -2.164 103.124 101.472 1.00 52.13 O
ATOM 11 C2' G A 580 -2.470 100.789 101.879 1.00 50.23 C
ATOM 12 O2' G A 580 -1.058 100.723 101.861 1.00 51.54 O
ATOM 13 C1' G A 580 -2.995 100.021 103.089 1.00 49.03 C
ATOM 14 N9 G A 580 -4.268 99.368 102.801 1.00 48.50 N
ATOM 15 C8 G A 580 -5.534 99.850 103.049 1.00 49.41 C
ATOM 16 N7 G A 580 -6.477 99.048 102.632 1.00 49.69 N
ATOM 17 C5 G A 580 -5.794 97.969 102.088 1.00 48.46 C
ATOM 18 C6 G A 580 -6.283 96.792 101.481 1.00 49.25 C
ATOM 19 O6 G A 580 -7.457 96.447 101.304 1.00 51.57 O
ATOM 20 N1 G A 580 -5.249 95.969 101.062 1.00 48.98 N
ATOM 21 C2 G A 580 -3.913 96.238 101.215 1.00 48.71 C
ATOM 22 N2 G A 580 -3.065 95.308 100.742 1.00 48.67 N
ATOM 23 N3 G A 580 -3.441 97.333 101.788 1.00 47.58 N
ATOM 24 C4 G A 580 -4.430 98.148 102.194 1.00 47.91 C
ATOM 25 P A A 581 -2.755 104.549 101.030 1.00 54.08 P
ATOM 26 OP1 A A 581 -2.570 105.456 102.193 1.00 54.33 O
ATOM 27 OP2 A A 581 -4.091 104.439 100.385 1.00 54.44 O
ATOM 28 O5' A A 581 -1.743 105.020 99.897 1.00 53.79 O
TER
ATOM 1 O3' G B 580 -2.164 103.124 101.472 1.00 52.13 O
ATOM 2 P A B 581 -2.755 104.549 101.030 1.00 54.08 P
ATOM 3 OP1 A B 581 -2.570 105.456 102.193 1.00 54.33 O
ATOM 4 OP2 A B 581 -4.091 104.439 100.385 1.00 54.44 O
ATOM 5 O5' A B 581 -1.743 105.020 99.897 1.00 53.79 O
ATOM 6 C5' A B 581 -0.396 105.439 100.210 1.00 52.44 C
ATOM 7 C4' A B 581 0.509 105.128 99.049 1.00 51.45 C
ATOM 8 O4' A B 581 0.645 103.690 98.923 1.00 52.71 O
ATOM 9 C3' A B 581 -0.034 105.569 97.703 1.00 50.88 C
ATOM 10 O3' A B 581 0.264 106.933 97.467 1.00 47.74 O
ATOM 11 C2' A B 581 0.696 104.641 96.749 1.00 52.59 C
ATOM 12 O2' A B 581 2.020 105.068 96.537 1.00 52.42 O
ATOM 13 C1' A B 581 0.712 103.335 97.552 1.00 54.55 C
ATOM 14 N9 A B 581 -0.415 102.450 97.257 1.00 58.93 N
ATOM 15 C8 A B 581 -1.467 102.138 98.076 1.00 61.44 C
ATOM 16 N7 A B 581 -2.359 101.354 97.521 1.00 63.92 N
ATOM 17 C5 A B 581 -1.855 101.125 96.252 1.00 64.14 C
ATOM 18 C6 A B 581 -2.340 100.381 95.164 1.00 66.15 C
ATOM 19 N6 A B 581 -3.500 99.716 95.177 1.00 66.91 N
ATOM 20 N1 A B 581 -1.586 100.347 94.044 1.00 67.35 N
ATOM 21 C2 A B 581 -0.431 101.025 94.029 1.00 67.32 C
ATOM 22 N3 A B 581 0.125 101.768 94.984 1.00 64.80 N
ATOM 23 C4 A B 581 -0.647 101.778 96.082 1.00 62.37 C
ATOM 24 P C B 582 -0.785 107.857 96.683 1.00 45.68 P
ATOM 25 OP1 C B 582 -0.146 109.183 96.495 1.00 45.12 O
ATOM 26 OP2 C B 582 -2.075 107.771 97.386 1.00 47.62 O
ATOM 27 O5' C B 582 -0.928 107.149 95.266 1.00 43.24 O
TER
ATOM 2 P G A 580 -6.249 103.880 104.648 1.00 54.62 P
ATOM 3 OP1 G A 580 -5.903 105.328 104.646 1.00 53.64 O
ATOM 4 OP2 G A 580 -7.455 103.410 103.920 1.00 54.01 O
ATOM 5 O5' G A 580 -5.049 103.026 104.044 1.00 54.26 O
ATOM 6 C5' G A 580 -3.673 103.301 104.366 1.00 51.83 C
ATOM 7 C4' G A 580 -2.794 102.286 103.680 1.00 50.76 C
ATOM 8 O4' G A 580 -3.172 100.959 104.140 1.00 50.36 O
ATOM 9 C3' G A 580 -2.979 102.193 102.170 1.00 51.09 C
ATOM 10 O3' G A 580 -2.164 103.124 101.472 1.00 52.13 O
ATOM 11 C2' G A 580 -2.470 100.789 101.879 1.00 50.23 C
ATOM 12 O2' G A 580 -1.058 100.723 101.861 1.00 51.54 O
ATOM 13 C1' G A 580 -2.995 100.021 103.089 1.00 49.03 C
ATOM 14 N9 G A 580 -4.268 99.368 102.801 1.00 48.50 N
ATOM 15 C8 G A 580 -5.534 99.850 103.049 1.00 49.41 C
ATOM 16 N7 G A 580 -6.477 99.048 102.632 1.00 49.69 N
ATOM 17 C5 G A 580 -5.794 97.969 102.088 1.00 48.46 C
ATOM 18 C6 G A 580 -6.283 96.792 101.481 1.00 49.25 C
ATOM 19 O6 G A 580 -7.457 96.447 101.304 1.00 51.57 O
ATOM 20 N1 G A 580 -5.249 95.969 101.062 1.00 48.98 N
ATOM 21 C2 G A 580 -3.913 96.238 101.215 1.00 48.71 C
ATOM 22 N2 G A 580 -3.065 95.308 100.742 1.00 48.67 N
ATOM 23 N3 G A 580 -3.441 97.333 101.788 1.00 47.58 N
ATOM 24 C4 G A 580 -4.430 98.148 102.194 1.00 47.91 C
ATOM 25 P A A 581 -2.755 104.549 101.030 1.00 54.08 P
ATOM 26 OP1 A A 581 -2.570 105.456 102.193 1.00 54.33 O
ATOM 27 OP2 A A 581 -4.091 104.439 100.385 1.00 54.44 O
ATOM 28 O5' A A 581 -1.743 105.020 99.897 1.00 53.79 O
TER
ATOM 1 O3' G B 580 -2.164 103.124 101.472 1.00 52.13 O
ATOM 2 P A B 581 -2.755 104.549 101.030 1.00 54.08 P
ATOM 3 OP1 A B 581 -2.570 105.456 102.193 1.00 54.33 O
ATOM 4 OP2 A B 581 -4.091 104.439 100.385 1.00 54.44 O
ATOM 5 O5' A B 581 -1.743 105.020 99.897 1.00 53.79 O
ATOM 6 C5' A B 581 -0.396 105.439 100.210 1.00 52.44 C
ATOM 7 C4' A B 581 0.509 105.128 99.049 1.00 51.45 C
ATOM 8 O4' A B 581 0.645 103.690 98.923 1.00 52.71 O
ATOM 9 C3' A B 581 -0.034 105.569 97.703 1.00 50.88 C
ATOM 10 O3' A B 581 0.264 106.933 97.467 1.00 47.74 O
ATOM 11 C2' A B 581 0.696 104.641 96.749 1.00 52.59 C
ATOM 12 O2' A B 581 2.020 105.068 96.537 1.00 52.42 O
ATOM 13 C1' A B 581 0.712 103.335 97.552 1.00 54.55 C
ATOM 14 N9 A B 581 -0.415 102.450 97.257 1.00 58.93 N
ATOM 15 C8 A B 581 -1.467 102.138 98.076 1.00 61.44 C
ATOM 16 N7 A B 581 -2.359 101.354 97.521 1.00 63.92 N
ATOM 17 C5 A B 581 -1.855 101.125 96.252 1.00 64.14 C
ATOM 18 C6 A B 581 -2.340 100.381 95.164 1.00 66.15 C
ATOM 19 N6 A B 581 -3.500 99.716 95.177 1.00 66.91 N
ATOM 20 N1 A B 581 -1.586 100.347 94.044 1.00 67.35 N
ATOM 21 C2 A B 581 -0.431 101.025 94.029 1.00 67.32 C
ATOM 22 N3 A B 581 0.125 101.768 94.984 1.00 64.80 N
ATOM 23 C4 A B 581 -0.647 101.778 96.082 1.00 62.37 C
ATOM 24 P C B 582 -0.785 107.857 96.683 1.00 45.68 P
ATOM 25 OP1 C B 582 -0.146 109.183 96.495 1.00 45.12 O
ATOM 26 OP2 C B 582 -2.075 107.771 97.386 1.00 47.62 O
ATOM 27 O5' C B 582 -0.928 107.149 95.266 1.00 43.24 O
TER
Atoms:
OP1: (-5.903,105.328,104.646)
OP2: (-7.455,103.410,103.920)
C3': (-2.979,102.193,102.170)
C1': (-2.995,100.021,103.089)
C5': (-3.673,103.301,104.366)
O6: (-7.457,96.447,101.304)
O4': (-3.172,100.959,104.140)
C8: (-5.534,99.850,103.049)
C2: (-3.913,96.238,101.215)
C6: (-6.283,96.792,101.481)
C5: (-5.794,97.969,102.088)
C4: (-4.430,98.148,102.194)
P: (-6.249,103.880,104.648)
C4': (-2.794,102.286,103.680)
C2': (-2.470,100.789,101.879)
O2': (-1.058,100.723,101.861)
N1: (-5.249,95.969,101.062)
N2: (-3.065,95.308,100.742)
N3: (-3.441,97.333,101.788)
N7: (-6.477,99.048,102.632)
N9: (-4.268,99.368,102.801)
O5': (-5.049,103.026,104.044)
O3': (-2.164,103.124,101.472)
OP2: (-7.455,103.410,103.920)
C3': (-2.979,102.193,102.170)
C1': (-2.995,100.021,103.089)
C5': (-3.673,103.301,104.366)
O6: (-7.457,96.447,101.304)
O4': (-3.172,100.959,104.140)
C8: (-5.534,99.850,103.049)
C2: (-3.913,96.238,101.215)
C6: (-6.283,96.792,101.481)
C5: (-5.794,97.969,102.088)
C4: (-4.430,98.148,102.194)
P: (-6.249,103.880,104.648)
C4': (-2.794,102.286,103.680)
C2': (-2.470,100.789,101.879)
O2': (-1.058,100.723,101.861)
N1: (-5.249,95.969,101.062)
N2: (-3.065,95.308,100.742)
N3: (-3.441,97.333,101.788)
N7: (-6.477,99.048,102.632)
N9: (-4.268,99.368,102.801)
O5': (-5.049,103.026,104.044)
O3': (-2.164,103.124,101.472)
OP1: (-2.570,105.456,102.193)
OP2: (-4.091,104.439,100.385)
C3': (-0.034,105.569,97.703)
C1': (0.712,103.335,97.552)
C5': (-0.396,105.439,100.210)
O4': (0.645,103.690,98.923)
C8: (-1.467,102.138,98.076)
O2': (2.020,105.068,96.537)
C6: (-2.340,100.381,95.164)
C5: (-1.855,101.125,96.252)
C4: (-0.647,101.778,96.082)
P: (-2.755,104.549,101.030)
C4': (0.509,105.128,99.049)
C2': (0.696,104.641,96.749)
C2: (-0.431,101.025,94.029)
N1: (-1.586,100.347,94.044)
N3: (0.125,101.768,94.984)
N6: (-3.500,99.716,95.177)
N7: (-2.359,101.354,97.521)
N9: (-0.415,102.450,97.257)
O5': (-1.743,105.020,99.897)
O3': (0.264,106.933,97.467)
OP2: (-4.091,104.439,100.385)
C3': (-0.034,105.569,97.703)
C1': (0.712,103.335,97.552)
C5': (-0.396,105.439,100.210)
O4': (0.645,103.690,98.923)
C8: (-1.467,102.138,98.076)
O2': (2.020,105.068,96.537)
C6: (-2.340,100.381,95.164)
C5: (-1.855,101.125,96.252)
C4: (-0.647,101.778,96.082)
P: (-2.755,104.549,101.030)
C4': (0.509,105.128,99.049)
C2': (0.696,104.641,96.749)
C2: (-0.431,101.025,94.029)
N1: (-1.586,100.347,94.044)
N3: (0.125,101.768,94.984)
N6: (-3.500,99.716,95.177)
N7: (-2.359,101.354,97.521)
N9: (-0.415,102.450,97.257)
O5': (-1.743,105.020,99.897)
O3': (0.264,106.933,97.467)
Image (generated by PyMOL):