Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ5:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.555 103.666 106.432 1.00 70.02 O
ATOM 2 P G A 580 -6.455 104.116 104.893 1.00 69.10 P
ATOM 3 OP1 G A 580 -6.002 105.530 104.902 1.00 67.57 O
ATOM 4 OP2 G A 580 -7.722 103.750 104.202 1.00 69.64 O
ATOM 5 O5' G A 580 -5.309 103.187 104.291 1.00 68.66 O
ATOM 6 C5' G A 580 -3.931 103.369 104.667 1.00 64.55 C
ATOM 7 C4' G A 580 -3.060 102.369 103.949 1.00 63.21 C
ATOM 8 O4' G A 580 -3.417 101.029 104.371 1.00 61.61 O
ATOM 9 C3' G A 580 -3.200 102.327 102.436 1.00 62.91 C
ATOM 10 O3' G A 580 -2.397 103.314 101.814 1.00 65.22 O
ATOM 11 C2' G A 580 -2.684 100.932 102.105 1.00 62.00 C
ATOM 12 O2' G A 580 -1.276 100.851 102.067 1.00 62.52 O
ATOM 13 C1' G A 580 -3.208 100.125 103.296 1.00 60.87 C
ATOM 14 N9 G A 580 -4.473 99.468 102.993 1.00 59.80 N
ATOM 15 C8 G A 580 -5.740 99.962 103.205 1.00 60.35 C
ATOM 16 N7 G A 580 -6.678 99.150 102.801 1.00 60.12 N
ATOM 17 C5 G A 580 -5.990 98.053 102.302 1.00 57.48 C
ATOM 18 C6 G A 580 -6.473 96.866 101.730 1.00 57.05 C
ATOM 19 O6 G A 580 -7.641 96.521 101.555 1.00 61.54 O
ATOM 20 N1 G A 580 -5.438 96.027 101.340 1.00 57.69 N
ATOM 21 C2 G A 580 -4.102 96.298 101.489 1.00 57.58 C
ATOM 22 N2 G A 580 -3.256 95.364 101.032 1.00 55.41 N
ATOM 23 N3 G A 580 -3.634 97.405 102.040 1.00 57.19 N
ATOM 24 C4 G A 580 -4.628 98.234 102.416 1.00 58.04 C
ATOM 25 P A A 581 -3.059 104.681 101.296 1.00 68.23 P
ATOM 26 OP1 A A 581 -3.003 105.668 102.413 1.00 66.21 O
ATOM 27 OP2 A A 581 -4.359 104.381 100.652 1.00 68.12 O
ATOM 28 O5' A A 581 -2.058 105.161 100.153 1.00 70.35 O
TER
ATOM 1 O3' G B 580 -2.397 103.314 101.814 1.00 65.22 O
ATOM 2 P A B 581 -3.059 104.681 101.296 1.00 68.23 P
ATOM 3 OP1 A B 581 -3.003 105.668 102.413 1.00 66.21 O
ATOM 4 OP2 A B 581 -4.359 104.381 100.652 1.00 68.12 O
ATOM 5 O5' A B 581 -2.058 105.161 100.153 1.00 70.35 O
ATOM 6 C5' A B 581 -0.706 105.574 100.457 1.00 68.38 C
ATOM 7 C4' A B 581 0.213 105.251 99.298 1.00 68.71 C
ATOM 8 O4' A B 581 0.411 103.818 99.210 1.00 69.67 O
ATOM 9 C3' A B 581 -0.303 105.643 97.922 1.00 67.49 C
ATOM 10 O3' A B 581 -0.041 107.002 97.629 1.00 63.88 O
ATOM 11 C2' A B 581 0.463 104.705 97.008 1.00 69.38 C
ATOM 12 O2' A B 581 1.782 105.153 96.788 1.00 70.80 O
ATOM 13 C1' A B 581 0.481 103.427 97.849 1.00 71.97 C
ATOM 14 N9 A B 581 -0.669 102.567 97.577 1.00 77.18 N
ATOM 15 C8 A B 581 -1.751 102.332 98.391 1.00 78.91 C
ATOM 16 N7 A B 581 -2.643 101.532 97.864 1.00 81.40 N
ATOM 17 C5 A B 581 -2.115 101.215 96.621 1.00 81.80 C
ATOM 18 C6 A B 581 -2.589 100.411 95.567 1.00 83.63 C
ATOM 19 N6 A B 581 -3.753 99.755 95.597 1.00 84.15 N
ATOM 20 N1 A B 581 -1.817 100.306 94.465 1.00 84.33 N
ATOM 21 C2 A B 581 -0.652 100.966 94.434 1.00 84.35 C
ATOM 22 N3 A B 581 -0.100 101.750 95.358 1.00 82.90 N
ATOM 23 C4 A B 581 -0.893 101.837 96.437 1.00 80.11 C
ATOM 24 P C B 582 -1.151 107.876 96.875 1.00 62.00 P
ATOM 25 OP1 C B 582 -0.611 109.249 96.739 1.00 61.41 O
ATOM 26 OP2 C B 582 -2.444 107.667 97.562 1.00 64.79 O
ATOM 27 O5' C B 582 -1.236 107.203 95.436 1.00 59.94 O
TER
ATOM 2 P G A 580 -6.455 104.116 104.893 1.00 69.10 P
ATOM 3 OP1 G A 580 -6.002 105.530 104.902 1.00 67.57 O
ATOM 4 OP2 G A 580 -7.722 103.750 104.202 1.00 69.64 O
ATOM 5 O5' G A 580 -5.309 103.187 104.291 1.00 68.66 O
ATOM 6 C5' G A 580 -3.931 103.369 104.667 1.00 64.55 C
ATOM 7 C4' G A 580 -3.060 102.369 103.949 1.00 63.21 C
ATOM 8 O4' G A 580 -3.417 101.029 104.371 1.00 61.61 O
ATOM 9 C3' G A 580 -3.200 102.327 102.436 1.00 62.91 C
ATOM 10 O3' G A 580 -2.397 103.314 101.814 1.00 65.22 O
ATOM 11 C2' G A 580 -2.684 100.932 102.105 1.00 62.00 C
ATOM 12 O2' G A 580 -1.276 100.851 102.067 1.00 62.52 O
ATOM 13 C1' G A 580 -3.208 100.125 103.296 1.00 60.87 C
ATOM 14 N9 G A 580 -4.473 99.468 102.993 1.00 59.80 N
ATOM 15 C8 G A 580 -5.740 99.962 103.205 1.00 60.35 C
ATOM 16 N7 G A 580 -6.678 99.150 102.801 1.00 60.12 N
ATOM 17 C5 G A 580 -5.990 98.053 102.302 1.00 57.48 C
ATOM 18 C6 G A 580 -6.473 96.866 101.730 1.00 57.05 C
ATOM 19 O6 G A 580 -7.641 96.521 101.555 1.00 61.54 O
ATOM 20 N1 G A 580 -5.438 96.027 101.340 1.00 57.69 N
ATOM 21 C2 G A 580 -4.102 96.298 101.489 1.00 57.58 C
ATOM 22 N2 G A 580 -3.256 95.364 101.032 1.00 55.41 N
ATOM 23 N3 G A 580 -3.634 97.405 102.040 1.00 57.19 N
ATOM 24 C4 G A 580 -4.628 98.234 102.416 1.00 58.04 C
ATOM 25 P A A 581 -3.059 104.681 101.296 1.00 68.23 P
ATOM 26 OP1 A A 581 -3.003 105.668 102.413 1.00 66.21 O
ATOM 27 OP2 A A 581 -4.359 104.381 100.652 1.00 68.12 O
ATOM 28 O5' A A 581 -2.058 105.161 100.153 1.00 70.35 O
TER
ATOM 1 O3' G B 580 -2.397 103.314 101.814 1.00 65.22 O
ATOM 2 P A B 581 -3.059 104.681 101.296 1.00 68.23 P
ATOM 3 OP1 A B 581 -3.003 105.668 102.413 1.00 66.21 O
ATOM 4 OP2 A B 581 -4.359 104.381 100.652 1.00 68.12 O
ATOM 5 O5' A B 581 -2.058 105.161 100.153 1.00 70.35 O
ATOM 6 C5' A B 581 -0.706 105.574 100.457 1.00 68.38 C
ATOM 7 C4' A B 581 0.213 105.251 99.298 1.00 68.71 C
ATOM 8 O4' A B 581 0.411 103.818 99.210 1.00 69.67 O
ATOM 9 C3' A B 581 -0.303 105.643 97.922 1.00 67.49 C
ATOM 10 O3' A B 581 -0.041 107.002 97.629 1.00 63.88 O
ATOM 11 C2' A B 581 0.463 104.705 97.008 1.00 69.38 C
ATOM 12 O2' A B 581 1.782 105.153 96.788 1.00 70.80 O
ATOM 13 C1' A B 581 0.481 103.427 97.849 1.00 71.97 C
ATOM 14 N9 A B 581 -0.669 102.567 97.577 1.00 77.18 N
ATOM 15 C8 A B 581 -1.751 102.332 98.391 1.00 78.91 C
ATOM 16 N7 A B 581 -2.643 101.532 97.864 1.00 81.40 N
ATOM 17 C5 A B 581 -2.115 101.215 96.621 1.00 81.80 C
ATOM 18 C6 A B 581 -2.589 100.411 95.567 1.00 83.63 C
ATOM 19 N6 A B 581 -3.753 99.755 95.597 1.00 84.15 N
ATOM 20 N1 A B 581 -1.817 100.306 94.465 1.00 84.33 N
ATOM 21 C2 A B 581 -0.652 100.966 94.434 1.00 84.35 C
ATOM 22 N3 A B 581 -0.100 101.750 95.358 1.00 82.90 N
ATOM 23 C4 A B 581 -0.893 101.837 96.437 1.00 80.11 C
ATOM 24 P C B 582 -1.151 107.876 96.875 1.00 62.00 P
ATOM 25 OP1 C B 582 -0.611 109.249 96.739 1.00 61.41 O
ATOM 26 OP2 C B 582 -2.444 107.667 97.562 1.00 64.79 O
ATOM 27 O5' C B 582 -1.236 107.203 95.436 1.00 59.94 O
TER
Atoms:
OP1: (-6.002,105.530,104.902)
OP2: (-7.722,103.750,104.202)
C3': (-3.200,102.327,102.436)
C1': (-3.208,100.125,103.296)
C5': (-3.931,103.369,104.667)
O6: (-7.641,96.521,101.555)
O4': (-3.417,101.029,104.371)
C8: (-5.740,99.962,103.205)
C2: (-4.102,96.298,101.489)
C6: (-6.473,96.866,101.730)
C5: (-5.990,98.053,102.302)
C4: (-4.628,98.234,102.416)
P: (-6.455,104.116,104.893)
C4': (-3.060,102.369,103.949)
C2': (-2.684,100.932,102.105)
O2': (-1.276,100.851,102.067)
N1: (-5.438,96.027,101.340)
N2: (-3.256,95.364,101.032)
N3: (-3.634,97.405,102.040)
N7: (-6.678,99.150,102.801)
N9: (-4.473,99.468,102.993)
O5': (-5.309,103.187,104.291)
O3': (-2.397,103.314,101.814)
OP2: (-7.722,103.750,104.202)
C3': (-3.200,102.327,102.436)
C1': (-3.208,100.125,103.296)
C5': (-3.931,103.369,104.667)
O6: (-7.641,96.521,101.555)
O4': (-3.417,101.029,104.371)
C8: (-5.740,99.962,103.205)
C2: (-4.102,96.298,101.489)
C6: (-6.473,96.866,101.730)
C5: (-5.990,98.053,102.302)
C4: (-4.628,98.234,102.416)
P: (-6.455,104.116,104.893)
C4': (-3.060,102.369,103.949)
C2': (-2.684,100.932,102.105)
O2': (-1.276,100.851,102.067)
N1: (-5.438,96.027,101.340)
N2: (-3.256,95.364,101.032)
N3: (-3.634,97.405,102.040)
N7: (-6.678,99.150,102.801)
N9: (-4.473,99.468,102.993)
O5': (-5.309,103.187,104.291)
O3': (-2.397,103.314,101.814)
OP1: (-3.003,105.668,102.413)
OP2: (-4.359,104.381,100.652)
C3': (-0.303,105.643,97.922)
C1': (0.481,103.427,97.849)
C5': (-0.706,105.574,100.457)
O4': (0.411,103.818,99.210)
C8: (-1.751,102.332,98.391)
O2': (1.782,105.153,96.788)
C6: (-2.589,100.411,95.567)
C5: (-2.115,101.215,96.621)
C4: (-0.893,101.837,96.437)
P: (-3.059,104.681,101.296)
C4': (0.213,105.251,99.298)
C2': (0.463,104.705,97.008)
C2: (-0.652,100.966,94.434)
N1: (-1.817,100.306,94.465)
N3: (-0.100,101.750,95.358)
N6: (-3.753,99.755,95.597)
N7: (-2.643,101.532,97.864)
N9: (-0.669,102.567,97.577)
O5': (-2.058,105.161,100.153)
O3': (-0.041,107.002,97.629)
OP2: (-4.359,104.381,100.652)
C3': (-0.303,105.643,97.922)
C1': (0.481,103.427,97.849)
C5': (-0.706,105.574,100.457)
O4': (0.411,103.818,99.210)
C8: (-1.751,102.332,98.391)
O2': (1.782,105.153,96.788)
C6: (-2.589,100.411,95.567)
C5: (-2.115,101.215,96.621)
C4: (-0.893,101.837,96.437)
P: (-3.059,104.681,101.296)
C4': (0.213,105.251,99.298)
C2': (0.463,104.705,97.008)
C2: (-0.652,100.966,94.434)
N1: (-1.817,100.306,94.465)
N3: (-0.100,101.750,95.358)
N6: (-3.753,99.755,95.597)
N7: (-2.643,101.532,97.864)
N9: (-0.669,102.567,97.577)
O5': (-2.058,105.161,100.153)
O3': (-0.041,107.002,97.629)
Image (generated by PyMOL):