Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DVZ:A7:A19
Extra
PDB:
ATOM 1 O3' U A 6 -1.720 54.820 -14.557 1.00 8.55 O
ATOM 2 P A A 7 -0.843 53.482 -14.478 1.00 10.72 P
ATOM 3 OP1 A A 7 -1.386 52.641 -13.391 1.00 11.43 O
ATOM 4 OP2 A A 7 0.583 53.887 -14.486 1.00 12.11 O
ATOM 5 O5' A A 7 -1.178 52.774 -15.870 1.00 10.33 O
ATOM 6 C5' A A 7 -0.439 51.628 -16.267 1.00 10.95 C
ATOM 7 C4' A A 7 -1.328 50.581 -16.917 1.00 9.69 C
ATOM 8 O4' A A 7 -2.172 49.988 -15.896 1.00 9.23 O
ATOM 9 C3' A A 7 -2.283 51.081 -17.997 1.00 10.92 C
ATOM 10 C2' A A 7 -3.562 51.310 -17.208 1.00 9.32 C
ATOM 11 O2' A A 7 -4.718 51.266 -18.023 1.00 10.06 O
ATOM 12 C1' A A 7 -3.518 50.086 -16.303 1.00 8.74 C
ATOM 13 N9 A A 7 -4.342 50.224 -15.111 1.00 8.16 N
ATOM 14 C8 A A 7 -4.093 51.033 -14.039 1.00 8.12 C
ATOM 15 N7 A A 7 -5.006 50.964 -13.100 1.00 8.56 N
ATOM 16 C5 A A 7 -5.917 50.044 -13.592 1.00 8.15 C
ATOM 17 C6 A A 7 -7.118 49.531 -13.068 1.00 9.11 C
ATOM 18 N6 A A 7 -7.615 49.897 -11.883 1.00 9.71 N
ATOM 19 N1 A A 7 -7.788 48.626 -13.812 1.00 9.71 N
ATOM 20 C2 A A 7 -7.284 48.266 -14.997 1.00 10.23 C
ATOM 21 N3 A A 7 -6.168 48.679 -15.594 1.00 9.28 N
ATOM 22 C4 A A 7 -5.523 49.576 -14.831 1.00 8.84 C
ATOM 23 O3' A A 7 -2.497 50.069 -18.968 0.55 12.36 O
ATOM 24 P G A 8 -1.566 49.936 -20.262 1.00 13.71 P
ATOM 25 OP1 G A 8 -0.163 50.173 -19.859 1.00 15.11 O
ATOM 26 OP2 G A 8 -2.173 50.709 -21.361 1.00 13.71 O
ATOM 27 O5' G A 8 -1.782 48.402 -20.668 1.00 17.18 O
TER
ATOM 1 O3' A B 18 -11.385 47.271 -10.646 1.00 9.83 O
ATOM 2 P C B 19 -11.584 48.848 -10.437 1.00 9.26 P
ATOM 3 OP1 C B 19 -12.951 49.175 -10.899 1.00 10.97 O
ATOM 4 OP2 C B 19 -10.423 49.556 -11.021 1.00 9.75 O
ATOM 5 O5' C B 19 -11.502 49.024 -8.851 1.00 9.35 O
ATOM 6 C5' C B 19 -12.358 48.280 -7.998 1.00 9.37 C
ATOM 7 C4' C B 19 -11.895 48.421 -6.561 1.00 10.83 C
ATOM 8 O4' C B 19 -10.503 48.034 -6.462 1.00 10.47 O
ATOM 9 C3' C B 19 -11.918 49.836 -6.004 1.00 10.81 C
ATOM 10 O3' C B 19 -13.218 50.164 -5.550 1.00 12.21 O
ATOM 11 C2' C B 19 -10.951 49.686 -4.839 1.00 11.12 C
ATOM 12 O2' C B 19 -11.527 48.966 -3.770 1.00 13.59 O
ATOM 13 C1' C B 19 -9.866 48.837 -5.487 1.00 10.14 C
ATOM 14 N1 C B 19 -8.774 49.633 -6.120 1.00 9.58 N
ATOM 15 C2 C B 19 -7.880 50.297 -5.278 1.00 10.30 C
ATOM 16 O2 C B 19 -8.040 50.199 -4.053 1.00 11.28 O
ATOM 17 N3 C B 19 -6.875 51.021 -5.826 1.00 10.05 N
ATOM 18 C4 C B 19 -6.751 51.088 -7.152 1.00 9.46 C
ATOM 19 N4 C B 19 -5.742 51.813 -7.648 1.00 9.71 N
ATOM 20 C5 C B 19 -7.655 50.414 -8.029 1.00 9.75 C
ATOM 21 C6 C B 19 -8.643 49.701 -7.476 1.00 9.49 C
ATOM 22 P C B 20 -13.879 51.557 -5.973 1.00 13.66 P
ATOM 23 OP1 C B 20 -15.252 51.581 -5.421 1.00 15.89 O
ATOM 24 OP2 C B 20 -13.659 51.755 -7.422 1.00 13.14 O
ATOM 25 O5' C B 20 -12.989 52.644 -5.213 1.00 13.76 O
TER
ATOM 2 P A A 7 -0.843 53.482 -14.478 1.00 10.72 P
ATOM 3 OP1 A A 7 -1.386 52.641 -13.391 1.00 11.43 O
ATOM 4 OP2 A A 7 0.583 53.887 -14.486 1.00 12.11 O
ATOM 5 O5' A A 7 -1.178 52.774 -15.870 1.00 10.33 O
ATOM 6 C5' A A 7 -0.439 51.628 -16.267 1.00 10.95 C
ATOM 7 C4' A A 7 -1.328 50.581 -16.917 1.00 9.69 C
ATOM 8 O4' A A 7 -2.172 49.988 -15.896 1.00 9.23 O
ATOM 9 C3' A A 7 -2.283 51.081 -17.997 1.00 10.92 C
ATOM 10 C2' A A 7 -3.562 51.310 -17.208 1.00 9.32 C
ATOM 11 O2' A A 7 -4.718 51.266 -18.023 1.00 10.06 O
ATOM 12 C1' A A 7 -3.518 50.086 -16.303 1.00 8.74 C
ATOM 13 N9 A A 7 -4.342 50.224 -15.111 1.00 8.16 N
ATOM 14 C8 A A 7 -4.093 51.033 -14.039 1.00 8.12 C
ATOM 15 N7 A A 7 -5.006 50.964 -13.100 1.00 8.56 N
ATOM 16 C5 A A 7 -5.917 50.044 -13.592 1.00 8.15 C
ATOM 17 C6 A A 7 -7.118 49.531 -13.068 1.00 9.11 C
ATOM 18 N6 A A 7 -7.615 49.897 -11.883 1.00 9.71 N
ATOM 19 N1 A A 7 -7.788 48.626 -13.812 1.00 9.71 N
ATOM 20 C2 A A 7 -7.284 48.266 -14.997 1.00 10.23 C
ATOM 21 N3 A A 7 -6.168 48.679 -15.594 1.00 9.28 N
ATOM 22 C4 A A 7 -5.523 49.576 -14.831 1.00 8.84 C
ATOM 23 O3' A A 7 -2.497 50.069 -18.968 0.55 12.36 O
ATOM 24 P G A 8 -1.566 49.936 -20.262 1.00 13.71 P
ATOM 25 OP1 G A 8 -0.163 50.173 -19.859 1.00 15.11 O
ATOM 26 OP2 G A 8 -2.173 50.709 -21.361 1.00 13.71 O
ATOM 27 O5' G A 8 -1.782 48.402 -20.668 1.00 17.18 O
TER
ATOM 1 O3' A B 18 -11.385 47.271 -10.646 1.00 9.83 O
ATOM 2 P C B 19 -11.584 48.848 -10.437 1.00 9.26 P
ATOM 3 OP1 C B 19 -12.951 49.175 -10.899 1.00 10.97 O
ATOM 4 OP2 C B 19 -10.423 49.556 -11.021 1.00 9.75 O
ATOM 5 O5' C B 19 -11.502 49.024 -8.851 1.00 9.35 O
ATOM 6 C5' C B 19 -12.358 48.280 -7.998 1.00 9.37 C
ATOM 7 C4' C B 19 -11.895 48.421 -6.561 1.00 10.83 C
ATOM 8 O4' C B 19 -10.503 48.034 -6.462 1.00 10.47 O
ATOM 9 C3' C B 19 -11.918 49.836 -6.004 1.00 10.81 C
ATOM 10 O3' C B 19 -13.218 50.164 -5.550 1.00 12.21 O
ATOM 11 C2' C B 19 -10.951 49.686 -4.839 1.00 11.12 C
ATOM 12 O2' C B 19 -11.527 48.966 -3.770 1.00 13.59 O
ATOM 13 C1' C B 19 -9.866 48.837 -5.487 1.00 10.14 C
ATOM 14 N1 C B 19 -8.774 49.633 -6.120 1.00 9.58 N
ATOM 15 C2 C B 19 -7.880 50.297 -5.278 1.00 10.30 C
ATOM 16 O2 C B 19 -8.040 50.199 -4.053 1.00 11.28 O
ATOM 17 N3 C B 19 -6.875 51.021 -5.826 1.00 10.05 N
ATOM 18 C4 C B 19 -6.751 51.088 -7.152 1.00 9.46 C
ATOM 19 N4 C B 19 -5.742 51.813 -7.648 1.00 9.71 N
ATOM 20 C5 C B 19 -7.655 50.414 -8.029 1.00 9.75 C
ATOM 21 C6 C B 19 -8.643 49.701 -7.476 1.00 9.49 C
ATOM 22 P C B 20 -13.879 51.557 -5.973 1.00 13.66 P
ATOM 23 OP1 C B 20 -15.252 51.581 -5.421 1.00 15.89 O
ATOM 24 OP2 C B 20 -13.659 51.755 -7.422 1.00 13.14 O
ATOM 25 O5' C B 20 -12.989 52.644 -5.213 1.00 13.76 O
TER
Atoms:
OP1: (-1.386,52.641,-13.391)
OP2: (0.583,53.887,-14.486)
C3': (-2.283,51.081,-17.997)
C1': (-3.518,50.086,-16.303)
C5': (-0.439,51.628,-16.267)
O4': (-2.172,49.988,-15.896)
C8: (-4.093,51.033,-14.039)
O2': (-4.718,51.266,-18.023)
C6: (-7.118,49.531,-13.068)
C5: (-5.917,50.044,-13.592)
C4: (-5.523,49.576,-14.831)
P: (-0.843,53.482,-14.478)
C4': (-1.328,50.581,-16.917)
C2': (-3.562,51.310,-17.208)
C2: (-7.284,48.266,-14.997)
N1: (-7.788,48.626,-13.812)
N3: (-6.168,48.679,-15.594)
N6: (-7.615,49.897,-11.883)
N7: (-5.006,50.964,-13.100)
N9: (-4.342,50.224,-15.111)
O5': (-1.178,52.774,-15.870)
O3': (-2.497,50.069,-18.968)
OP2: (0.583,53.887,-14.486)
C3': (-2.283,51.081,-17.997)
C1': (-3.518,50.086,-16.303)
C5': (-0.439,51.628,-16.267)
O4': (-2.172,49.988,-15.896)
C8: (-4.093,51.033,-14.039)
O2': (-4.718,51.266,-18.023)
C6: (-7.118,49.531,-13.068)
C5: (-5.917,50.044,-13.592)
C4: (-5.523,49.576,-14.831)
P: (-0.843,53.482,-14.478)
C4': (-1.328,50.581,-16.917)
C2': (-3.562,51.310,-17.208)
C2: (-7.284,48.266,-14.997)
N1: (-7.788,48.626,-13.812)
N3: (-6.168,48.679,-15.594)
N6: (-7.615,49.897,-11.883)
N7: (-5.006,50.964,-13.100)
N9: (-4.342,50.224,-15.111)
O5': (-1.178,52.774,-15.870)
O3': (-2.497,50.069,-18.968)
C2: (-7.880,50.297,-5.278)
OP1: (-12.951,49.175,-10.899)
OP2: (-10.423,49.556,-11.021)
C4: (-6.751,51.088,-7.152)
O5': (-11.502,49.024,-8.851)
C3': (-11.918,49.836,-6.004)
C1': (-9.866,48.837,-5.487)
O4': (-10.503,48.034,-6.462)
C5': (-12.358,48.280,-7.998)
P: (-11.584,48.848,-10.437)
O2: (-8.040,50.199,-4.053)
C4': (-11.895,48.421,-6.561)
C2': (-10.951,49.686,-4.839)
O2': (-11.527,48.966,-3.770)
N1: (-8.774,49.633,-6.120)
N3: (-6.875,51.021,-5.826)
N4: (-5.742,51.813,-7.648)
C6: (-8.643,49.701,-7.476)
C5: (-7.655,50.414,-8.029)
O3': (-13.218,50.164,-5.550)
OP1: (-12.951,49.175,-10.899)
OP2: (-10.423,49.556,-11.021)
C4: (-6.751,51.088,-7.152)
O5': (-11.502,49.024,-8.851)
C3': (-11.918,49.836,-6.004)
C1': (-9.866,48.837,-5.487)
O4': (-10.503,48.034,-6.462)
C5': (-12.358,48.280,-7.998)
P: (-11.584,48.848,-10.437)
O2: (-8.040,50.199,-4.053)
C4': (-11.895,48.421,-6.561)
C2': (-10.951,49.686,-4.839)
O2': (-11.527,48.966,-3.770)
N1: (-8.774,49.633,-6.120)
N3: (-6.875,51.021,-5.826)
N4: (-5.742,51.813,-7.648)
C6: (-8.643,49.701,-7.476)
C5: (-7.655,50.414,-8.029)
O3': (-13.218,50.164,-5.550)
Image (generated by PyMOL):