Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ6:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.429 103.573 106.133 1.00 73.44 O
ATOM 2 P G A 580 -6.367 104.064 104.604 1.00 72.82 P
ATOM 3 OP1 G A 580 -5.955 105.493 104.637 1.00 70.35 O
ATOM 4 OP2 G A 580 -7.625 103.669 103.916 1.00 72.44 O
ATOM 5 O5' G A 580 -5.207 103.181 103.962 1.00 73.38 O
ATOM 6 C5' G A 580 -3.826 103.389 104.314 1.00 70.17 C
ATOM 7 C4' G A 580 -2.957 102.397 103.588 1.00 68.98 C
ATOM 8 O4' G A 580 -3.297 101.057 104.024 1.00 68.63 O
ATOM 9 C3' G A 580 -3.137 102.347 102.081 1.00 68.30 C
ATOM 10 O3' G A 580 -2.356 103.334 101.431 1.00 70.50 O
ATOM 11 C2' G A 580 -2.623 100.955 101.743 1.00 68.29 C
ATOM 12 O2' G A 580 -1.217 100.883 101.671 1.00 68.78 O
ATOM 13 C1' G A 580 -3.119 100.149 102.946 1.00 68.22 C
ATOM 14 N9 G A 580 -4.397 99.508 102.667 1.00 67.93 N
ATOM 15 C8 G A 580 -5.653 100.023 102.889 1.00 68.56 C
ATOM 16 N7 G A 580 -6.608 99.228 102.491 1.00 69.05 N
ATOM 17 C5 G A 580 -5.942 98.119 101.989 1.00 66.65 C
ATOM 18 C6 G A 580 -6.449 96.933 101.421 1.00 66.50 C
ATOM 19 O6 G A 580 -7.624 96.607 101.246 1.00 70.28 O
ATOM 20 N1 G A 580 -5.430 96.074 101.036 1.00 66.53 N
ATOM 21 C2 G A 580 -4.092 96.324 101.182 1.00 66.91 C
ATOM 22 N2 G A 580 -3.265 95.372 100.735 1.00 66.52 N
ATOM 23 N3 G A 580 -3.602 97.427 101.722 1.00 66.23 N
ATOM 24 C4 G A 580 -4.578 98.275 102.098 1.00 66.56 C
ATOM 25 P A A 581 -3.040 104.692 100.911 1.00 72.67 P
ATOM 26 OP1 A A 581 -2.995 105.665 102.037 1.00 71.61 O
ATOM 27 OP2 A A 581 -4.334 104.389 100.253 1.00 73.08 O
ATOM 28 O5' A A 581 -2.035 105.201 99.786 1.00 74.19 O
TER
ATOM 1 O3' G B 580 -2.356 103.334 101.431 1.00 70.50 O
ATOM 2 P A B 581 -3.040 104.692 100.911 1.00 72.67 P
ATOM 3 OP1 A B 581 -2.995 105.665 102.037 1.00 71.61 O
ATOM 4 OP2 A B 581 -4.334 104.389 100.253 1.00 73.08 O
ATOM 5 O5' A B 581 -2.035 105.201 99.786 1.00 74.19 O
ATOM 6 C5' A B 581 -0.688 105.603 100.116 1.00 72.49 C
ATOM 7 C4' A B 581 0.253 105.250 98.987 1.00 72.68 C
ATOM 8 O4' A B 581 0.389 103.811 98.888 1.00 74.55 O
ATOM 9 C3' A B 581 -0.203 105.667 97.601 1.00 71.01 C
ATOM 10 O3' A B 581 0.091 107.025 97.346 1.00 67.76 O
ATOM 11 C2' A B 581 0.587 104.730 96.707 1.00 72.71 C
ATOM 12 O2' A B 581 1.923 105.151 96.549 1.00 73.25 O
ATOM 13 C1' A B 581 0.552 103.441 97.529 1.00 76.55 C
ATOM 14 N9 A B 581 -0.571 102.590 97.155 1.00 82.07 N
ATOM 15 C8 A B 581 -1.770 102.446 97.801 1.00 84.60 C
ATOM 16 N7 A B 581 -2.602 101.633 97.198 1.00 87.31 N
ATOM 17 C5 A B 581 -1.900 101.206 96.083 1.00 88.02 C
ATOM 18 C6 A B 581 -2.236 100.341 95.028 1.00 90.62 C
ATOM 19 N6 A B 581 -3.417 99.724 94.918 1.00 92.29 N
ATOM 20 N1 A B 581 -1.306 100.131 94.072 1.00 91.84 N
ATOM 21 C2 A B 581 -0.124 100.752 94.179 1.00 91.23 C
ATOM 22 N3 A B 581 0.307 101.588 95.121 1.00 89.21 N
ATOM 23 C4 A B 581 -0.641 101.777 96.052 1.00 86.38 C
ATOM 24 P C B 582 -0.980 107.928 96.576 1.00 64.39 P
ATOM 25 OP1 C B 582 -0.377 109.262 96.373 1.00 64.88 O
ATOM 26 OP2 C B 582 -2.266 107.813 97.298 1.00 68.28 O
ATOM 27 O5' C B 582 -1.128 107.201 95.166 1.00 63.70 O
TER
ATOM 2 P G A 580 -6.367 104.064 104.604 1.00 72.82 P
ATOM 3 OP1 G A 580 -5.955 105.493 104.637 1.00 70.35 O
ATOM 4 OP2 G A 580 -7.625 103.669 103.916 1.00 72.44 O
ATOM 5 O5' G A 580 -5.207 103.181 103.962 1.00 73.38 O
ATOM 6 C5' G A 580 -3.826 103.389 104.314 1.00 70.17 C
ATOM 7 C4' G A 580 -2.957 102.397 103.588 1.00 68.98 C
ATOM 8 O4' G A 580 -3.297 101.057 104.024 1.00 68.63 O
ATOM 9 C3' G A 580 -3.137 102.347 102.081 1.00 68.30 C
ATOM 10 O3' G A 580 -2.356 103.334 101.431 1.00 70.50 O
ATOM 11 C2' G A 580 -2.623 100.955 101.743 1.00 68.29 C
ATOM 12 O2' G A 580 -1.217 100.883 101.671 1.00 68.78 O
ATOM 13 C1' G A 580 -3.119 100.149 102.946 1.00 68.22 C
ATOM 14 N9 G A 580 -4.397 99.508 102.667 1.00 67.93 N
ATOM 15 C8 G A 580 -5.653 100.023 102.889 1.00 68.56 C
ATOM 16 N7 G A 580 -6.608 99.228 102.491 1.00 69.05 N
ATOM 17 C5 G A 580 -5.942 98.119 101.989 1.00 66.65 C
ATOM 18 C6 G A 580 -6.449 96.933 101.421 1.00 66.50 C
ATOM 19 O6 G A 580 -7.624 96.607 101.246 1.00 70.28 O
ATOM 20 N1 G A 580 -5.430 96.074 101.036 1.00 66.53 N
ATOM 21 C2 G A 580 -4.092 96.324 101.182 1.00 66.91 C
ATOM 22 N2 G A 580 -3.265 95.372 100.735 1.00 66.52 N
ATOM 23 N3 G A 580 -3.602 97.427 101.722 1.00 66.23 N
ATOM 24 C4 G A 580 -4.578 98.275 102.098 1.00 66.56 C
ATOM 25 P A A 581 -3.040 104.692 100.911 1.00 72.67 P
ATOM 26 OP1 A A 581 -2.995 105.665 102.037 1.00 71.61 O
ATOM 27 OP2 A A 581 -4.334 104.389 100.253 1.00 73.08 O
ATOM 28 O5' A A 581 -2.035 105.201 99.786 1.00 74.19 O
TER
ATOM 1 O3' G B 580 -2.356 103.334 101.431 1.00 70.50 O
ATOM 2 P A B 581 -3.040 104.692 100.911 1.00 72.67 P
ATOM 3 OP1 A B 581 -2.995 105.665 102.037 1.00 71.61 O
ATOM 4 OP2 A B 581 -4.334 104.389 100.253 1.00 73.08 O
ATOM 5 O5' A B 581 -2.035 105.201 99.786 1.00 74.19 O
ATOM 6 C5' A B 581 -0.688 105.603 100.116 1.00 72.49 C
ATOM 7 C4' A B 581 0.253 105.250 98.987 1.00 72.68 C
ATOM 8 O4' A B 581 0.389 103.811 98.888 1.00 74.55 O
ATOM 9 C3' A B 581 -0.203 105.667 97.601 1.00 71.01 C
ATOM 10 O3' A B 581 0.091 107.025 97.346 1.00 67.76 O
ATOM 11 C2' A B 581 0.587 104.730 96.707 1.00 72.71 C
ATOM 12 O2' A B 581 1.923 105.151 96.549 1.00 73.25 O
ATOM 13 C1' A B 581 0.552 103.441 97.529 1.00 76.55 C
ATOM 14 N9 A B 581 -0.571 102.590 97.155 1.00 82.07 N
ATOM 15 C8 A B 581 -1.770 102.446 97.801 1.00 84.60 C
ATOM 16 N7 A B 581 -2.602 101.633 97.198 1.00 87.31 N
ATOM 17 C5 A B 581 -1.900 101.206 96.083 1.00 88.02 C
ATOM 18 C6 A B 581 -2.236 100.341 95.028 1.00 90.62 C
ATOM 19 N6 A B 581 -3.417 99.724 94.918 1.00 92.29 N
ATOM 20 N1 A B 581 -1.306 100.131 94.072 1.00 91.84 N
ATOM 21 C2 A B 581 -0.124 100.752 94.179 1.00 91.23 C
ATOM 22 N3 A B 581 0.307 101.588 95.121 1.00 89.21 N
ATOM 23 C4 A B 581 -0.641 101.777 96.052 1.00 86.38 C
ATOM 24 P C B 582 -0.980 107.928 96.576 1.00 64.39 P
ATOM 25 OP1 C B 582 -0.377 109.262 96.373 1.00 64.88 O
ATOM 26 OP2 C B 582 -2.266 107.813 97.298 1.00 68.28 O
ATOM 27 O5' C B 582 -1.128 107.201 95.166 1.00 63.70 O
TER
Atoms:
OP1: (-5.955,105.493,104.637)
OP2: (-7.625,103.669,103.916)
C3': (-3.137,102.347,102.081)
C1': (-3.119,100.149,102.946)
C5': (-3.826,103.389,104.314)
O6: (-7.624,96.607,101.246)
O4': (-3.297,101.057,104.024)
C8: (-5.653,100.023,102.889)
C2: (-4.092,96.324,101.182)
C6: (-6.449,96.933,101.421)
C5: (-5.942,98.119,101.989)
C4: (-4.578,98.275,102.098)
P: (-6.367,104.064,104.604)
C4': (-2.957,102.397,103.588)
C2': (-2.623,100.955,101.743)
O2': (-1.217,100.883,101.671)
N1: (-5.430,96.074,101.036)
N2: (-3.265,95.372,100.735)
N3: (-3.602,97.427,101.722)
N7: (-6.608,99.228,102.491)
N9: (-4.397,99.508,102.667)
O5': (-5.207,103.181,103.962)
O3': (-2.356,103.334,101.431)
OP2: (-7.625,103.669,103.916)
C3': (-3.137,102.347,102.081)
C1': (-3.119,100.149,102.946)
C5': (-3.826,103.389,104.314)
O6: (-7.624,96.607,101.246)
O4': (-3.297,101.057,104.024)
C8: (-5.653,100.023,102.889)
C2: (-4.092,96.324,101.182)
C6: (-6.449,96.933,101.421)
C5: (-5.942,98.119,101.989)
C4: (-4.578,98.275,102.098)
P: (-6.367,104.064,104.604)
C4': (-2.957,102.397,103.588)
C2': (-2.623,100.955,101.743)
O2': (-1.217,100.883,101.671)
N1: (-5.430,96.074,101.036)
N2: (-3.265,95.372,100.735)
N3: (-3.602,97.427,101.722)
N7: (-6.608,99.228,102.491)
N9: (-4.397,99.508,102.667)
O5': (-5.207,103.181,103.962)
O3': (-2.356,103.334,101.431)
OP1: (-2.995,105.665,102.037)
OP2: (-4.334,104.389,100.253)
C3': (-0.203,105.667,97.601)
C1': (0.552,103.441,97.529)
C5': (-0.688,105.603,100.116)
O4': (0.389,103.811,98.888)
C8: (-1.770,102.446,97.801)
O2': (1.923,105.151,96.549)
C6: (-2.236,100.341,95.028)
C5: (-1.900,101.206,96.083)
C4: (-0.641,101.777,96.052)
P: (-3.040,104.692,100.911)
C4': (0.253,105.250,98.987)
C2': (0.587,104.730,96.707)
C2: (-0.124,100.752,94.179)
N1: (-1.306,100.131,94.072)
N3: (0.307,101.588,95.121)
N6: (-3.417,99.724,94.918)
N7: (-2.602,101.633,97.198)
N9: (-0.571,102.590,97.155)
O5': (-2.035,105.201,99.786)
O3': (0.091,107.025,97.346)
OP2: (-4.334,104.389,100.253)
C3': (-0.203,105.667,97.601)
C1': (0.552,103.441,97.529)
C5': (-0.688,105.603,100.116)
O4': (0.389,103.811,98.888)
C8: (-1.770,102.446,97.801)
O2': (1.923,105.151,96.549)
C6: (-2.236,100.341,95.028)
C5: (-1.900,101.206,96.083)
C4: (-0.641,101.777,96.052)
P: (-3.040,104.692,100.911)
C4': (0.253,105.250,98.987)
C2': (0.587,104.730,96.707)
C2: (-0.124,100.752,94.179)
N1: (-1.306,100.131,94.072)
N3: (0.307,101.588,95.121)
N6: (-3.417,99.724,94.918)
N7: (-2.602,101.633,97.198)
N9: (-0.571,102.590,97.155)
O5': (-2.035,105.201,99.786)
O3': (0.091,107.025,97.346)
Image (generated by PyMOL):