Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ7:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.643 103.461 106.064 1.00 68.27 O
ATOM 2 P G A 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 3 OP1 G A 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 4 OP2 G A 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 5 O5' G A 580 -5.453 102.979 103.884 1.00 67.45 O
ATOM 6 C5' G A 580 -4.063 103.159 104.230 1.00 63.70 C
ATOM 7 C4' G A 580 -3.207 102.156 103.487 1.00 62.95 C
ATOM 8 O4' G A 580 -3.559 100.811 103.903 1.00 61.78 O
ATOM 9 C3' G A 580 -3.380 102.128 101.977 1.00 62.41 C
ATOM 10 O3' G A 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 11 C2' G A 580 -2.888 100.732 101.620 1.00 61.93 C
ATOM 12 O2' G A 580 -1.481 100.630 101.557 1.00 63.39 O
ATOM 13 C1' G A 580 -3.402 99.917 102.809 1.00 61.02 C
ATOM 14 N9 G A 580 -4.691 99.296 102.528 1.00 59.59 N
ATOM 15 C8 G A 580 -5.937 99.842 102.735 1.00 59.93 C
ATOM 16 N7 G A 580 -6.908 99.060 102.350 1.00 59.52 N
ATOM 17 C5 G A 580 -6.267 97.926 101.871 1.00 57.46 C
ATOM 18 C6 G A 580 -6.801 96.745 101.317 1.00 57.71 C
ATOM 19 O6 G A 580 -7.987 96.446 101.140 1.00 61.44 O
ATOM 20 N1 G A 580 -5.802 95.855 100.947 1.00 57.05 N
ATOM 21 C2 G A 580 -4.459 96.072 101.094 1.00 57.25 C
ATOM 22 N2 G A 580 -3.657 95.088 100.661 1.00 55.59 N
ATOM 23 N3 G A 580 -3.942 97.172 101.620 1.00 57.07 N
ATOM 24 C4 G A 580 -4.899 98.052 101.980 1.00 57.83 C
ATOM 25 P A A 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 26 OP1 A A 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 27 OP2 A A 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 28 O5' A A 581 -2.237 104.906 99.625 1.00 70.42 O
TER
ATOM 1 O3' G B 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 2 P A B 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 3 OP1 A B 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 4 OP2 A B 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 5 O5' A B 581 -2.237 104.906 99.625 1.00 70.42 O
ATOM 6 C5' A B 581 -0.914 105.363 99.997 1.00 69.02 C
ATOM 7 C4' A B 581 0.065 105.081 98.879 1.00 69.00 C
ATOM 8 O4' A B 581 0.328 103.656 98.799 1.00 69.57 O
ATOM 9 C3' A B 581 -0.423 105.452 97.489 1.00 67.27 C
ATOM 10 O3' A B 581 -0.224 106.824 97.209 1.00 63.99 O
ATOM 11 C2' A B 581 0.409 104.546 96.603 1.00 68.92 C
ATOM 12 O2' A B 581 1.721 105.042 96.435 1.00 69.48 O
ATOM 13 C1' A B 581 0.430 103.265 97.439 1.00 71.73 C
ATOM 14 N9 A B 581 -0.716 102.408 97.144 1.00 76.95 N
ATOM 15 C8 A B 581 -1.868 102.268 97.881 1.00 78.62 C
ATOM 16 N7 A B 581 -2.738 101.448 97.348 1.00 81.45 N
ATOM 17 C5 A B 581 -2.120 101.015 96.184 1.00 81.88 C
ATOM 18 C6 A B 581 -2.533 100.139 95.163 1.00 83.74 C
ATOM 19 N6 A B 581 -3.716 99.516 95.150 1.00 84.14 N
ATOM 20 N1 A B 581 -1.679 99.924 94.140 1.00 84.55 N
ATOM 21 C2 A B 581 -0.495 100.550 94.152 1.00 84.44 C
ATOM 22 N3 A B 581 0.005 101.393 95.053 1.00 83.02 N
ATOM 23 C4 A B 581 -0.869 101.588 96.053 1.00 80.27 C
ATOM 24 P C B 582 -1.339 107.629 96.390 1.00 60.45 P
ATOM 25 OP1 C B 582 -0.819 108.997 96.165 1.00 60.62 O
ATOM 26 OP2 C B 582 -2.636 107.447 97.076 1.00 63.05 O
ATOM 27 O5' C B 582 -1.406 106.855 95.002 1.00 59.08 O
TER
ATOM 2 P G A 580 -6.595 103.895 104.519 1.00 67.88 P
ATOM 3 OP1 G A 580 -6.170 105.318 104.497 1.00 66.50 O
ATOM 4 OP2 G A 580 -7.876 103.494 103.877 1.00 67.70 O
ATOM 5 O5' G A 580 -5.453 102.979 103.884 1.00 67.45 O
ATOM 6 C5' G A 580 -4.063 103.159 104.230 1.00 63.70 C
ATOM 7 C4' G A 580 -3.207 102.156 103.487 1.00 62.95 C
ATOM 8 O4' G A 580 -3.559 100.811 103.903 1.00 61.78 O
ATOM 9 C3' G A 580 -3.380 102.128 101.977 1.00 62.41 C
ATOM 10 O3' G A 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 11 C2' G A 580 -2.888 100.732 101.620 1.00 61.93 C
ATOM 12 O2' G A 580 -1.481 100.630 101.557 1.00 63.39 O
ATOM 13 C1' G A 580 -3.402 99.917 102.809 1.00 61.02 C
ATOM 14 N9 G A 580 -4.691 99.296 102.528 1.00 59.59 N
ATOM 15 C8 G A 580 -5.937 99.842 102.735 1.00 59.93 C
ATOM 16 N7 G A 580 -6.908 99.060 102.350 1.00 59.52 N
ATOM 17 C5 G A 580 -6.267 97.926 101.871 1.00 57.46 C
ATOM 18 C6 G A 580 -6.801 96.745 101.317 1.00 57.71 C
ATOM 19 O6 G A 580 -7.987 96.446 101.140 1.00 61.44 O
ATOM 20 N1 G A 580 -5.802 95.855 100.947 1.00 57.05 N
ATOM 21 C2 G A 580 -4.459 96.072 101.094 1.00 57.25 C
ATOM 22 N2 G A 580 -3.657 95.088 100.661 1.00 55.59 N
ATOM 23 N3 G A 580 -3.942 97.172 101.620 1.00 57.07 N
ATOM 24 C4 G A 580 -4.899 98.052 101.980 1.00 57.83 C
ATOM 25 P A A 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 26 OP1 A A 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 27 OP2 A A 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 28 O5' A A 581 -2.237 104.906 99.625 1.00 70.42 O
TER
ATOM 1 O3' G B 580 -2.590 103.119 101.347 1.00 64.32 O
ATOM 2 P A B 581 -3.287 104.423 100.721 1.00 67.35 P
ATOM 3 OP1 A B 581 -3.353 105.456 101.791 1.00 64.72 O
ATOM 4 OP2 A B 581 -4.522 104.033 100.000 1.00 67.39 O
ATOM 5 O5' A B 581 -2.237 104.906 99.625 1.00 70.42 O
ATOM 6 C5' A B 581 -0.914 105.363 99.997 1.00 69.02 C
ATOM 7 C4' A B 581 0.065 105.081 98.879 1.00 69.00 C
ATOM 8 O4' A B 581 0.328 103.656 98.799 1.00 69.57 O
ATOM 9 C3' A B 581 -0.423 105.452 97.489 1.00 67.27 C
ATOM 10 O3' A B 581 -0.224 106.824 97.209 1.00 63.99 O
ATOM 11 C2' A B 581 0.409 104.546 96.603 1.00 68.92 C
ATOM 12 O2' A B 581 1.721 105.042 96.435 1.00 69.48 O
ATOM 13 C1' A B 581 0.430 103.265 97.439 1.00 71.73 C
ATOM 14 N9 A B 581 -0.716 102.408 97.144 1.00 76.95 N
ATOM 15 C8 A B 581 -1.868 102.268 97.881 1.00 78.62 C
ATOM 16 N7 A B 581 -2.738 101.448 97.348 1.00 81.45 N
ATOM 17 C5 A B 581 -2.120 101.015 96.184 1.00 81.88 C
ATOM 18 C6 A B 581 -2.533 100.139 95.163 1.00 83.74 C
ATOM 19 N6 A B 581 -3.716 99.516 95.150 1.00 84.14 N
ATOM 20 N1 A B 581 -1.679 99.924 94.140 1.00 84.55 N
ATOM 21 C2 A B 581 -0.495 100.550 94.152 1.00 84.44 C
ATOM 22 N3 A B 581 0.005 101.393 95.053 1.00 83.02 N
ATOM 23 C4 A B 581 -0.869 101.588 96.053 1.00 80.27 C
ATOM 24 P C B 582 -1.339 107.629 96.390 1.00 60.45 P
ATOM 25 OP1 C B 582 -0.819 108.997 96.165 1.00 60.62 O
ATOM 26 OP2 C B 582 -2.636 107.447 97.076 1.00 63.05 O
ATOM 27 O5' C B 582 -1.406 106.855 95.002 1.00 59.08 O
TER
Atoms:
OP1: (-6.170,105.318,104.497)
OP2: (-7.876,103.494,103.877)
C3': (-3.380,102.128,101.977)
C1': (-3.402,99.917,102.809)
C5': (-4.063,103.159,104.230)
O6: (-7.987,96.446,101.140)
O4': (-3.559,100.811,103.903)
C8: (-5.937,99.842,102.735)
C2: (-4.459,96.072,101.094)
C6: (-6.801,96.745,101.317)
C5: (-6.267,97.926,101.871)
C4: (-4.899,98.052,101.980)
P: (-6.595,103.895,104.519)
C4': (-3.207,102.156,103.487)
C2': (-2.888,100.732,101.620)
O2': (-1.481,100.630,101.557)
N1: (-5.802,95.855,100.947)
N2: (-3.657,95.088,100.661)
N3: (-3.942,97.172,101.620)
N7: (-6.908,99.060,102.350)
N9: (-4.691,99.296,102.528)
O5': (-5.453,102.979,103.884)
O3': (-2.590,103.119,101.347)
OP2: (-7.876,103.494,103.877)
C3': (-3.380,102.128,101.977)
C1': (-3.402,99.917,102.809)
C5': (-4.063,103.159,104.230)
O6: (-7.987,96.446,101.140)
O4': (-3.559,100.811,103.903)
C8: (-5.937,99.842,102.735)
C2: (-4.459,96.072,101.094)
C6: (-6.801,96.745,101.317)
C5: (-6.267,97.926,101.871)
C4: (-4.899,98.052,101.980)
P: (-6.595,103.895,104.519)
C4': (-3.207,102.156,103.487)
C2': (-2.888,100.732,101.620)
O2': (-1.481,100.630,101.557)
N1: (-5.802,95.855,100.947)
N2: (-3.657,95.088,100.661)
N3: (-3.942,97.172,101.620)
N7: (-6.908,99.060,102.350)
N9: (-4.691,99.296,102.528)
O5': (-5.453,102.979,103.884)
O3': (-2.590,103.119,101.347)
OP1: (-3.353,105.456,101.791)
OP2: (-4.522,104.033,100.000)
C3': (-0.423,105.452,97.489)
C1': (0.430,103.265,97.439)
C5': (-0.914,105.363,99.997)
O4': (0.328,103.656,98.799)
C8: (-1.868,102.268,97.881)
O2': (1.721,105.042,96.435)
C6: (-2.533,100.139,95.163)
C5: (-2.120,101.015,96.184)
C4: (-0.869,101.588,96.053)
P: (-3.287,104.423,100.721)
C4': (0.065,105.081,98.879)
C2': (0.409,104.546,96.603)
C2: (-0.495,100.550,94.152)
N1: (-1.679,99.924,94.140)
N3: (0.005,101.393,95.053)
N6: (-3.716,99.516,95.150)
N7: (-2.738,101.448,97.348)
N9: (-0.716,102.408,97.144)
O5': (-2.237,104.906,99.625)
O3': (-0.224,106.824,97.209)
OP2: (-4.522,104.033,100.000)
C3': (-0.423,105.452,97.489)
C1': (0.430,103.265,97.439)
C5': (-0.914,105.363,99.997)
O4': (0.328,103.656,98.799)
C8: (-1.868,102.268,97.881)
O2': (1.721,105.042,96.435)
C6: (-2.533,100.139,95.163)
C5: (-2.120,101.015,96.184)
C4: (-0.869,101.588,96.053)
P: (-3.287,104.423,100.721)
C4': (0.065,105.081,98.879)
C2': (0.409,104.546,96.603)
C2: (-0.495,100.550,94.152)
N1: (-1.679,99.924,94.140)
N3: (0.005,101.393,95.053)
N6: (-3.716,99.516,95.150)
N7: (-2.738,101.448,97.348)
N9: (-0.716,102.408,97.144)
O5': (-2.237,104.906,99.625)
O3': (-0.224,106.824,97.209)
Image (generated by PyMOL):