Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ9:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.450 102.608 106.056 1.00 47.01 O
ATOM 2 P G A 580 -6.444 102.931 104.478 1.00 46.09 P
ATOM 3 OP1 G A 580 -6.260 104.403 104.345 1.00 45.75 O
ATOM 4 OP2 G A 580 -7.624 102.273 103.845 1.00 47.14 O
ATOM 5 O5' G A 580 -5.153 102.169 103.934 1.00 44.71 O
ATOM 6 C5' G A 580 -3.821 102.559 104.334 1.00 41.95 C
ATOM 7 C4' G A 580 -2.816 101.615 103.728 1.00 41.75 C
ATOM 8 O4' G A 580 -3.066 100.281 104.240 1.00 41.56 O
ATOM 9 C3' G A 580 -2.917 101.460 102.220 1.00 42.74 C
ATOM 10 O3' G A 580 -2.139 102.436 101.548 1.00 45.42 O
ATOM 11 C2' G A 580 -2.316 100.079 101.990 1.00 42.12 C
ATOM 12 O2' G A 580 -0.905 100.088 101.985 1.00 45.46 O
ATOM 13 C1' G A 580 -2.815 99.321 103.223 1.00 41.98 C
ATOM 14 N9 G A 580 -4.053 98.599 102.950 1.00 42.12 N
ATOM 15 C8 G A 580 -5.343 99.051 103.134 1.00 42.25 C
ATOM 16 N7 G A 580 -6.245 98.192 102.746 1.00 42.27 N
ATOM 17 C5 G A 580 -5.511 97.105 102.294 1.00 41.47 C
ATOM 18 C6 G A 580 -5.944 95.880 101.757 1.00 40.94 C
ATOM 19 O6 G A 580 -7.101 95.492 101.568 1.00 44.31 O
ATOM 20 N1 G A 580 -4.872 95.058 101.429 1.00 40.78 N
ATOM 21 C2 G A 580 -3.546 95.375 101.608 1.00 41.57 C
ATOM 22 N2 G A 580 -2.649 94.432 101.252 1.00 39.83 N
ATOM 23 N3 G A 580 -3.128 96.526 102.106 1.00 41.11 N
ATOM 24 C4 G A 580 -4.157 97.336 102.425 1.00 41.26 C
ATOM 25 P A A 581 -2.775 103.859 101.154 1.00 47.51 P
ATOM 26 OP1 A A 581 -2.687 104.724 102.368 1.00 45.61 O
ATOM 27 OP2 A A 581 -4.082 103.698 100.461 1.00 46.25 O
ATOM 28 O5' A A 581 -1.734 104.403 100.078 1.00 47.70 O
TER
ATOM 1 O3' G B 580 -2.139 102.436 101.548 1.00 45.42 O
ATOM 2 P A B 581 -2.775 103.859 101.154 1.00 47.51 P
ATOM 3 OP1 A B 581 -2.687 104.724 102.368 1.00 45.61 O
ATOM 4 OP2 A B 581 -4.082 103.698 100.461 1.00 46.25 O
ATOM 5 O5' A B 581 -1.734 104.403 100.078 1.00 47.70 O
ATOM 6 C5' A B 581 -0.383 104.763 100.453 1.00 44.86 C
ATOM 7 C4' A B 581 0.564 104.461 99.320 1.00 43.19 C
ATOM 8 O4' A B 581 0.748 103.027 99.224 1.00 43.78 O
ATOM 9 C3' A B 581 0.074 104.877 97.944 1.00 42.39 C
ATOM 10 O3' A B 581 0.332 106.251 97.673 1.00 39.84 O
ATOM 11 C2' A B 581 0.843 103.931 97.037 1.00 44.98 C
ATOM 12 O2' A B 581 2.184 104.342 96.855 1.00 47.27 O
ATOM 13 C1' A B 581 0.816 102.641 97.863 1.00 47.07 C
ATOM 14 N9 A B 581 -0.367 101.830 97.577 1.00 52.57 N
ATOM 15 C8 A B 581 -1.499 101.716 98.351 1.00 54.58 C
ATOM 16 N7 A B 581 -2.429 100.963 97.821 1.00 55.67 N
ATOM 17 C5 A B 581 -1.875 100.543 96.621 1.00 55.75 C
ATOM 18 C6 A B 581 -2.374 99.737 95.584 1.00 56.61 C
ATOM 19 N6 A B 581 -3.598 99.197 95.589 1.00 55.50 N
ATOM 20 N1 A B 581 -1.566 99.505 94.525 1.00 57.35 N
ATOM 21 C2 A B 581 -0.344 100.058 94.519 1.00 56.44 C
ATOM 22 N3 A B 581 0.234 100.839 95.429 1.00 56.74 N
ATOM 23 C4 A B 581 -0.596 101.050 96.467 1.00 54.90 C
ATOM 24 P C B 582 -0.745 107.112 96.840 1.00 40.74 P
ATOM 25 OP1 C B 582 -0.205 108.473 96.570 1.00 39.14 O
ATOM 26 OP2 C B 582 -2.051 106.980 97.533 1.00 42.05 O
ATOM 27 O5' C B 582 -0.849 106.331 95.457 1.00 37.88 O
TER
ATOM 2 P G A 580 -6.444 102.931 104.478 1.00 46.09 P
ATOM 3 OP1 G A 580 -6.260 104.403 104.345 1.00 45.75 O
ATOM 4 OP2 G A 580 -7.624 102.273 103.845 1.00 47.14 O
ATOM 5 O5' G A 580 -5.153 102.169 103.934 1.00 44.71 O
ATOM 6 C5' G A 580 -3.821 102.559 104.334 1.00 41.95 C
ATOM 7 C4' G A 580 -2.816 101.615 103.728 1.00 41.75 C
ATOM 8 O4' G A 580 -3.066 100.281 104.240 1.00 41.56 O
ATOM 9 C3' G A 580 -2.917 101.460 102.220 1.00 42.74 C
ATOM 10 O3' G A 580 -2.139 102.436 101.548 1.00 45.42 O
ATOM 11 C2' G A 580 -2.316 100.079 101.990 1.00 42.12 C
ATOM 12 O2' G A 580 -0.905 100.088 101.985 1.00 45.46 O
ATOM 13 C1' G A 580 -2.815 99.321 103.223 1.00 41.98 C
ATOM 14 N9 G A 580 -4.053 98.599 102.950 1.00 42.12 N
ATOM 15 C8 G A 580 -5.343 99.051 103.134 1.00 42.25 C
ATOM 16 N7 G A 580 -6.245 98.192 102.746 1.00 42.27 N
ATOM 17 C5 G A 580 -5.511 97.105 102.294 1.00 41.47 C
ATOM 18 C6 G A 580 -5.944 95.880 101.757 1.00 40.94 C
ATOM 19 O6 G A 580 -7.101 95.492 101.568 1.00 44.31 O
ATOM 20 N1 G A 580 -4.872 95.058 101.429 1.00 40.78 N
ATOM 21 C2 G A 580 -3.546 95.375 101.608 1.00 41.57 C
ATOM 22 N2 G A 580 -2.649 94.432 101.252 1.00 39.83 N
ATOM 23 N3 G A 580 -3.128 96.526 102.106 1.00 41.11 N
ATOM 24 C4 G A 580 -4.157 97.336 102.425 1.00 41.26 C
ATOM 25 P A A 581 -2.775 103.859 101.154 1.00 47.51 P
ATOM 26 OP1 A A 581 -2.687 104.724 102.368 1.00 45.61 O
ATOM 27 OP2 A A 581 -4.082 103.698 100.461 1.00 46.25 O
ATOM 28 O5' A A 581 -1.734 104.403 100.078 1.00 47.70 O
TER
ATOM 1 O3' G B 580 -2.139 102.436 101.548 1.00 45.42 O
ATOM 2 P A B 581 -2.775 103.859 101.154 1.00 47.51 P
ATOM 3 OP1 A B 581 -2.687 104.724 102.368 1.00 45.61 O
ATOM 4 OP2 A B 581 -4.082 103.698 100.461 1.00 46.25 O
ATOM 5 O5' A B 581 -1.734 104.403 100.078 1.00 47.70 O
ATOM 6 C5' A B 581 -0.383 104.763 100.453 1.00 44.86 C
ATOM 7 C4' A B 581 0.564 104.461 99.320 1.00 43.19 C
ATOM 8 O4' A B 581 0.748 103.027 99.224 1.00 43.78 O
ATOM 9 C3' A B 581 0.074 104.877 97.944 1.00 42.39 C
ATOM 10 O3' A B 581 0.332 106.251 97.673 1.00 39.84 O
ATOM 11 C2' A B 581 0.843 103.931 97.037 1.00 44.98 C
ATOM 12 O2' A B 581 2.184 104.342 96.855 1.00 47.27 O
ATOM 13 C1' A B 581 0.816 102.641 97.863 1.00 47.07 C
ATOM 14 N9 A B 581 -0.367 101.830 97.577 1.00 52.57 N
ATOM 15 C8 A B 581 -1.499 101.716 98.351 1.00 54.58 C
ATOM 16 N7 A B 581 -2.429 100.963 97.821 1.00 55.67 N
ATOM 17 C5 A B 581 -1.875 100.543 96.621 1.00 55.75 C
ATOM 18 C6 A B 581 -2.374 99.737 95.584 1.00 56.61 C
ATOM 19 N6 A B 581 -3.598 99.197 95.589 1.00 55.50 N
ATOM 20 N1 A B 581 -1.566 99.505 94.525 1.00 57.35 N
ATOM 21 C2 A B 581 -0.344 100.058 94.519 1.00 56.44 C
ATOM 22 N3 A B 581 0.234 100.839 95.429 1.00 56.74 N
ATOM 23 C4 A B 581 -0.596 101.050 96.467 1.00 54.90 C
ATOM 24 P C B 582 -0.745 107.112 96.840 1.00 40.74 P
ATOM 25 OP1 C B 582 -0.205 108.473 96.570 1.00 39.14 O
ATOM 26 OP2 C B 582 -2.051 106.980 97.533 1.00 42.05 O
ATOM 27 O5' C B 582 -0.849 106.331 95.457 1.00 37.88 O
TER
Atoms:
OP1: (-6.260,104.403,104.345)
OP2: (-7.624,102.273,103.845)
C3': (-2.917,101.460,102.220)
C1': (-2.815,99.321,103.223)
C5': (-3.821,102.559,104.334)
O6: (-7.101,95.492,101.568)
O4': (-3.066,100.281,104.240)
C8: (-5.343,99.051,103.134)
C2: (-3.546,95.375,101.608)
C6: (-5.944,95.880,101.757)
C5: (-5.511,97.105,102.294)
C4: (-4.157,97.336,102.425)
P: (-6.444,102.931,104.478)
C4': (-2.816,101.615,103.728)
C2': (-2.316,100.079,101.990)
O2': (-0.905,100.088,101.985)
N1: (-4.872,95.058,101.429)
N2: (-2.649,94.432,101.252)
N3: (-3.128,96.526,102.106)
N7: (-6.245,98.192,102.746)
N9: (-4.053,98.599,102.950)
O5': (-5.153,102.169,103.934)
O3': (-2.139,102.436,101.548)
OP2: (-7.624,102.273,103.845)
C3': (-2.917,101.460,102.220)
C1': (-2.815,99.321,103.223)
C5': (-3.821,102.559,104.334)
O6: (-7.101,95.492,101.568)
O4': (-3.066,100.281,104.240)
C8: (-5.343,99.051,103.134)
C2: (-3.546,95.375,101.608)
C6: (-5.944,95.880,101.757)
C5: (-5.511,97.105,102.294)
C4: (-4.157,97.336,102.425)
P: (-6.444,102.931,104.478)
C4': (-2.816,101.615,103.728)
C2': (-2.316,100.079,101.990)
O2': (-0.905,100.088,101.985)
N1: (-4.872,95.058,101.429)
N2: (-2.649,94.432,101.252)
N3: (-3.128,96.526,102.106)
N7: (-6.245,98.192,102.746)
N9: (-4.053,98.599,102.950)
O5': (-5.153,102.169,103.934)
O3': (-2.139,102.436,101.548)
OP1: (-2.687,104.724,102.368)
OP2: (-4.082,103.698,100.461)
C3': (0.074,104.877,97.944)
C1': (0.816,102.641,97.863)
C5': (-0.383,104.763,100.453)
O4': (0.748,103.027,99.224)
C8: (-1.499,101.716,98.351)
O2': (2.184,104.342,96.855)
C6: (-2.374,99.737,95.584)
C5: (-1.875,100.543,96.621)
C4: (-0.596,101.050,96.467)
P: (-2.775,103.859,101.154)
C4': (0.564,104.461,99.320)
C2': (0.843,103.931,97.037)
C2: (-0.344,100.058,94.519)
N1: (-1.566,99.505,94.525)
N3: (0.234,100.839,95.429)
N6: (-3.598,99.197,95.589)
N7: (-2.429,100.963,97.821)
N9: (-0.367,101.830,97.577)
O5': (-1.734,104.403,100.078)
O3': (0.332,106.251,97.673)
OP2: (-4.082,103.698,100.461)
C3': (0.074,104.877,97.944)
C1': (0.816,102.641,97.863)
C5': (-0.383,104.763,100.453)
O4': (0.748,103.027,99.224)
C8: (-1.499,101.716,98.351)
O2': (2.184,104.342,96.855)
C6: (-2.374,99.737,95.584)
C5: (-1.875,100.543,96.621)
C4: (-0.596,101.050,96.467)
P: (-2.775,103.859,101.154)
C4': (0.564,104.461,99.320)
C2': (0.843,103.931,97.037)
C2: (-0.344,100.058,94.519)
N1: (-1.566,99.505,94.525)
N3: (0.234,100.839,95.429)
N6: (-3.598,99.197,95.589)
N7: (-2.429,100.963,97.821)
N9: (-0.367,101.830,97.577)
O5': (-1.734,104.403,100.078)
O3': (0.332,106.251,97.673)
Image (generated by PyMOL):