Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YHQ:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.380 102.880 106.138 1.00 52.17 O
ATOM 2 P G A 580 -6.268 103.311 104.595 1.00 52.31 P
ATOM 3 OP1 G A 580 -5.930 104.755 104.590 1.00 52.02 O
ATOM 4 OP2 G A 580 -7.473 102.834 103.871 1.00 52.69 O
ATOM 5 O5' G A 580 -5.028 102.476 104.045 1.00 50.64 O
ATOM 6 C5' G A 580 -3.680 102.767 104.466 1.00 47.04 C
ATOM 7 C4' G A 580 -2.720 101.793 103.827 1.00 46.17 C
ATOM 8 O4' G A 580 -2.986 100.455 104.323 1.00 45.20 O
ATOM 9 C3' G A 580 -2.839 101.667 102.316 1.00 45.14 C
ATOM 10 O3' G A 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 11 C2' G A 580 -2.266 100.280 102.061 1.00 44.46 C
ATOM 12 O2' G A 580 -0.857 100.263 102.045 1.00 46.88 O
ATOM 13 C1' G A 580 -2.773 99.511 103.285 1.00 44.01 C
ATOM 14 N9 G A 580 -4.038 98.839 103.014 1.00 42.34 N
ATOM 15 C8 G A 580 -5.304 99.323 103.252 1.00 44.27 C
ATOM 16 N7 G A 580 -6.244 98.512 102.855 1.00 43.63 N
ATOM 17 C5 G A 580 -5.558 97.425 102.335 1.00 41.40 C
ATOM 18 C6 G A 580 -6.044 96.247 101.754 1.00 40.89 C
ATOM 19 O6 G A 580 -7.215 95.915 101.567 1.00 45.68 O
ATOM 20 N1 G A 580 -5.011 95.405 101.362 1.00 41.15 N
ATOM 21 C2 G A 580 -3.674 95.674 101.512 1.00 42.23 C
ATOM 22 N2 G A 580 -2.825 94.728 101.081 1.00 41.21 N
ATOM 23 N3 G A 580 -3.205 96.785 102.049 1.00 41.13 N
ATOM 24 C4 G A 580 -4.196 97.609 102.437 1.00 40.91 C
ATOM 25 P A A 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 26 OP1 A A 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 27 OP2 A A 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 28 O5' A A 581 -1.755 104.548 100.034 1.00 51.01 O
TER
ATOM 1 O3' G B 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 2 P A B 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 3 OP1 A B 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 4 OP2 A B 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 5 O5' A B 581 -1.755 104.548 100.034 1.00 51.01 O
ATOM 6 C5' A B 581 -0.403 104.917 100.396 1.00 50.11 C
ATOM 7 C4' A B 581 0.546 104.593 99.261 1.00 49.83 C
ATOM 8 O4' A B 581 0.723 103.155 99.156 1.00 50.11 O
ATOM 9 C3' A B 581 0.060 105.026 97.887 1.00 48.36 C
ATOM 10 O3' A B 581 0.374 106.388 97.638 1.00 44.11 O
ATOM 11 C2' A B 581 0.797 104.064 96.969 1.00 50.55 C
ATOM 12 O2' A B 581 2.140 104.450 96.781 1.00 51.76 O
ATOM 13 C1' A B 581 0.746 102.772 97.790 1.00 53.16 C
ATOM 14 N9 A B 581 -0.463 101.987 97.529 1.00 58.49 N
ATOM 15 C8 A B 581 -1.586 101.904 98.320 1.00 61.23 C
ATOM 16 N7 A B 581 -2.538 101.160 97.814 1.00 62.62 N
ATOM 17 C5 A B 581 -2.008 100.713 96.613 1.00 62.80 C
ATOM 18 C6 A B 581 -2.531 99.896 95.598 1.00 64.09 C
ATOM 19 N6 A B 581 -3.754 99.358 95.636 1.00 64.23 N
ATOM 20 N1 A B 581 -1.748 99.648 94.526 1.00 64.36 N
ATOM 21 C2 A B 581 -0.522 100.186 94.492 1.00 64.03 C
ATOM 22 N3 A B 581 0.083 100.968 95.384 1.00 63.11 N
ATOM 23 C4 A B 581 -0.724 101.202 96.431 1.00 61.34 C
ATOM 24 P C B 582 -0.671 107.315 96.845 1.00 42.42 P
ATOM 25 OP1 C B 582 -0.016 108.627 96.620 1.00 40.45 O
ATOM 26 OP2 C B 582 -1.972 107.269 97.541 1.00 43.59 O
ATOM 27 O5' C B 582 -0.835 106.580 95.444 1.00 40.34 O
TER
ATOM 2 P G A 580 -6.268 103.311 104.595 1.00 52.31 P
ATOM 3 OP1 G A 580 -5.930 104.755 104.590 1.00 52.02 O
ATOM 4 OP2 G A 580 -7.473 102.834 103.871 1.00 52.69 O
ATOM 5 O5' G A 580 -5.028 102.476 104.045 1.00 50.64 O
ATOM 6 C5' G A 580 -3.680 102.767 104.466 1.00 47.04 C
ATOM 7 C4' G A 580 -2.720 101.793 103.827 1.00 46.17 C
ATOM 8 O4' G A 580 -2.986 100.455 104.323 1.00 45.20 O
ATOM 9 C3' G A 580 -2.839 101.667 102.316 1.00 45.14 C
ATOM 10 O3' G A 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 11 C2' G A 580 -2.266 100.280 102.061 1.00 44.46 C
ATOM 12 O2' G A 580 -0.857 100.263 102.045 1.00 46.88 O
ATOM 13 C1' G A 580 -2.773 99.511 103.285 1.00 44.01 C
ATOM 14 N9 G A 580 -4.038 98.839 103.014 1.00 42.34 N
ATOM 15 C8 G A 580 -5.304 99.323 103.252 1.00 44.27 C
ATOM 16 N7 G A 580 -6.244 98.512 102.855 1.00 43.63 N
ATOM 17 C5 G A 580 -5.558 97.425 102.335 1.00 41.40 C
ATOM 18 C6 G A 580 -6.044 96.247 101.754 1.00 40.89 C
ATOM 19 O6 G A 580 -7.215 95.915 101.567 1.00 45.68 O
ATOM 20 N1 G A 580 -5.011 95.405 101.362 1.00 41.15 N
ATOM 21 C2 G A 580 -3.674 95.674 101.512 1.00 42.23 C
ATOM 22 N2 G A 580 -2.825 94.728 101.081 1.00 41.21 N
ATOM 23 N3 G A 580 -3.205 96.785 102.049 1.00 41.13 N
ATOM 24 C4 G A 580 -4.196 97.609 102.437 1.00 40.91 C
ATOM 25 P A A 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 26 OP1 A A 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 27 OP2 A A 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 28 O5' A A 581 -1.755 104.548 100.034 1.00 51.01 O
TER
ATOM 1 O3' G B 580 -2.073 102.662 101.658 1.00 46.95 O
ATOM 2 P A B 581 -2.781 103.997 101.118 1.00 50.37 P
ATOM 3 OP1 A B 581 -2.830 104.971 102.244 1.00 48.33 O
ATOM 4 OP2 A B 581 -4.029 103.632 100.410 1.00 50.24 O
ATOM 5 O5' A B 581 -1.755 104.548 100.034 1.00 51.01 O
ATOM 6 C5' A B 581 -0.403 104.917 100.396 1.00 50.11 C
ATOM 7 C4' A B 581 0.546 104.593 99.261 1.00 49.83 C
ATOM 8 O4' A B 581 0.723 103.155 99.156 1.00 50.11 O
ATOM 9 C3' A B 581 0.060 105.026 97.887 1.00 48.36 C
ATOM 10 O3' A B 581 0.374 106.388 97.638 1.00 44.11 O
ATOM 11 C2' A B 581 0.797 104.064 96.969 1.00 50.55 C
ATOM 12 O2' A B 581 2.140 104.450 96.781 1.00 51.76 O
ATOM 13 C1' A B 581 0.746 102.772 97.790 1.00 53.16 C
ATOM 14 N9 A B 581 -0.463 101.987 97.529 1.00 58.49 N
ATOM 15 C8 A B 581 -1.586 101.904 98.320 1.00 61.23 C
ATOM 16 N7 A B 581 -2.538 101.160 97.814 1.00 62.62 N
ATOM 17 C5 A B 581 -2.008 100.713 96.613 1.00 62.80 C
ATOM 18 C6 A B 581 -2.531 99.896 95.598 1.00 64.09 C
ATOM 19 N6 A B 581 -3.754 99.358 95.636 1.00 64.23 N
ATOM 20 N1 A B 581 -1.748 99.648 94.526 1.00 64.36 N
ATOM 21 C2 A B 581 -0.522 100.186 94.492 1.00 64.03 C
ATOM 22 N3 A B 581 0.083 100.968 95.384 1.00 63.11 N
ATOM 23 C4 A B 581 -0.724 101.202 96.431 1.00 61.34 C
ATOM 24 P C B 582 -0.671 107.315 96.845 1.00 42.42 P
ATOM 25 OP1 C B 582 -0.016 108.627 96.620 1.00 40.45 O
ATOM 26 OP2 C B 582 -1.972 107.269 97.541 1.00 43.59 O
ATOM 27 O5' C B 582 -0.835 106.580 95.444 1.00 40.34 O
TER
Atoms:
OP1: (-5.930,104.755,104.590)
OP2: (-7.473,102.834,103.871)
C3': (-2.839,101.667,102.316)
C1': (-2.773,99.511,103.285)
C5': (-3.680,102.767,104.466)
O6: (-7.215,95.915,101.567)
O4': (-2.986,100.455,104.323)
C8: (-5.304,99.323,103.252)
C2: (-3.674,95.674,101.512)
C6: (-6.044,96.247,101.754)
C5: (-5.558,97.425,102.335)
C4: (-4.196,97.609,102.437)
P: (-6.268,103.311,104.595)
C4': (-2.720,101.793,103.827)
C2': (-2.266,100.280,102.061)
O2': (-0.857,100.263,102.045)
N1: (-5.011,95.405,101.362)
N2: (-2.825,94.728,101.081)
N3: (-3.205,96.785,102.049)
N7: (-6.244,98.512,102.855)
N9: (-4.038,98.839,103.014)
O5': (-5.028,102.476,104.045)
O3': (-2.073,102.662,101.658)
OP2: (-7.473,102.834,103.871)
C3': (-2.839,101.667,102.316)
C1': (-2.773,99.511,103.285)
C5': (-3.680,102.767,104.466)
O6: (-7.215,95.915,101.567)
O4': (-2.986,100.455,104.323)
C8: (-5.304,99.323,103.252)
C2: (-3.674,95.674,101.512)
C6: (-6.044,96.247,101.754)
C5: (-5.558,97.425,102.335)
C4: (-4.196,97.609,102.437)
P: (-6.268,103.311,104.595)
C4': (-2.720,101.793,103.827)
C2': (-2.266,100.280,102.061)
O2': (-0.857,100.263,102.045)
N1: (-5.011,95.405,101.362)
N2: (-2.825,94.728,101.081)
N3: (-3.205,96.785,102.049)
N7: (-6.244,98.512,102.855)
N9: (-4.038,98.839,103.014)
O5': (-5.028,102.476,104.045)
O3': (-2.073,102.662,101.658)
OP1: (-2.830,104.971,102.244)
OP2: (-4.029,103.632,100.410)
C3': (0.060,105.026,97.887)
C1': (0.746,102.772,97.790)
C5': (-0.403,104.917,100.396)
O4': (0.723,103.155,99.156)
C8: (-1.586,101.904,98.320)
O2': (2.140,104.450,96.781)
C6: (-2.531,99.896,95.598)
C5: (-2.008,100.713,96.613)
C4: (-0.724,101.202,96.431)
P: (-2.781,103.997,101.118)
C4': (0.546,104.593,99.261)
C2': (0.797,104.064,96.969)
C2: (-0.522,100.186,94.492)
N1: (-1.748,99.648,94.526)
N3: (0.083,100.968,95.384)
N6: (-3.754,99.358,95.636)
N7: (-2.538,101.160,97.814)
N9: (-0.463,101.987,97.529)
O5': (-1.755,104.548,100.034)
O3': (0.374,106.388,97.638)
OP2: (-4.029,103.632,100.410)
C3': (0.060,105.026,97.887)
C1': (0.746,102.772,97.790)
C5': (-0.403,104.917,100.396)
O4': (0.723,103.155,99.156)
C8: (-1.586,101.904,98.320)
O2': (2.140,104.450,96.781)
C6: (-2.531,99.896,95.598)
C5: (-2.008,100.713,96.613)
C4: (-0.724,101.202,96.431)
P: (-2.781,103.997,101.118)
C4': (0.546,104.593,99.261)
C2': (0.797,104.064,96.969)
C2: (-0.522,100.186,94.492)
N1: (-1.748,99.648,94.526)
N3: (0.083,100.968,95.384)
N6: (-3.754,99.358,95.636)
N7: (-2.538,101.160,97.814)
N9: (-0.463,101.987,97.529)
O5': (-1.755,104.548,100.034)
O3': (0.374,106.388,97.638)
Image (generated by PyMOL):