Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.184 103.616 106.240 1.00 58.99 O
ATOM 2 P G A 580 -6.181 104.078 104.700 1.00 59.27 P
ATOM 3 OP1 G A 580 -5.892 105.537 104.703 1.00 57.75 O
ATOM 4 OP2 G A 580 -7.408 103.567 104.028 1.00 59.51 O
ATOM 5 O5' G A 580 -4.951 103.296 104.058 1.00 59.26 O
ATOM 6 C5' G A 580 -3.592 103.584 104.447 1.00 55.65 C
ATOM 7 C4' G A 580 -2.656 102.597 103.798 1.00 54.11 C
ATOM 8 O4' G A 580 -2.959 101.263 104.283 1.00 53.35 O
ATOM 9 C3' G A 580 -2.787 102.481 102.288 1.00 53.08 C
ATOM 10 O3' G A 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 11 C2' G A 580 -2.233 101.090 102.024 1.00 53.83 C
ATOM 12 O2' G A 580 -0.821 101.059 102.009 1.00 56.90 O
ATOM 13 C1' G A 580 -2.753 100.322 103.242 1.00 53.50 C
ATOM 14 N9 G A 580 -4.021 99.658 102.962 1.00 53.12 N
ATOM 15 C8 G A 580 -5.284 100.139 103.212 1.00 53.96 C
ATOM 16 N7 G A 580 -6.226 99.333 102.808 1.00 55.52 N
ATOM 17 C5 G A 580 -5.544 98.251 102.269 1.00 53.82 C
ATOM 18 C6 G A 580 -6.034 97.067 101.671 1.00 54.41 C
ATOM 19 O6 G A 580 -7.208 96.725 101.489 1.00 56.98 O
ATOM 20 N1 G A 580 -4.998 96.235 101.260 1.00 54.91 N
ATOM 21 C2 G A 580 -3.661 96.512 101.405 1.00 54.23 C
ATOM 22 N2 G A 580 -2.812 95.588 100.939 1.00 53.07 N
ATOM 23 N3 G A 580 -3.191 97.615 101.963 1.00 53.13 N
ATOM 24 C4 G A 580 -4.182 98.433 102.368 1.00 52.83 C
ATOM 25 P A A 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 26 OP1 A A 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 27 OP2 A A 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 28 O5' A A 581 -1.684 105.285 99.943 1.00 56.33 O
TER
ATOM 1 O3' G B 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 2 P A B 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 3 OP1 A B 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 4 OP2 A B 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 5 O5' A B 581 -1.684 105.285 99.943 1.00 56.33 O
ATOM 6 C5' A B 581 -0.316 105.666 100.233 1.00 54.42 C
ATOM 7 C4' A B 581 0.589 105.304 99.074 1.00 54.50 C
ATOM 8 O4' A B 581 0.726 103.861 98.977 1.00 56.27 O
ATOM 9 C3' A B 581 0.090 105.732 97.707 1.00 52.99 C
ATOM 10 O3' A B 581 0.415 107.088 97.446 1.00 49.01 O
ATOM 11 C2' A B 581 0.801 104.761 96.778 1.00 54.96 C
ATOM 12 O2' A B 581 2.136 105.140 96.540 1.00 55.32 O
ATOM 13 C1' A B 581 0.776 103.475 97.611 1.00 58.43 C
ATOM 14 N9 A B 581 -0.395 102.643 97.341 1.00 63.44 N
ATOM 15 C8 A B 581 -1.457 102.420 98.180 1.00 66.60 C
ATOM 16 N7 A B 581 -2.393 101.663 97.662 1.00 69.20 N
ATOM 17 C5 A B 581 -1.914 101.361 96.398 1.00 68.95 C
ATOM 18 C6 A B 581 -2.454 100.606 95.341 1.00 70.38 C
ATOM 19 N6 A B 581 -3.647 100.009 95.393 1.00 71.72 N
ATOM 20 N1 A B 581 -1.722 100.491 94.214 1.00 70.78 N
ATOM 21 C2 A B 581 -0.531 101.105 94.162 1.00 71.59 C
ATOM 22 N3 A B 581 0.080 101.851 95.086 1.00 70.31 N
ATOM 23 C4 A B 581 -0.675 101.943 96.192 1.00 67.22 C
ATOM 24 P C B 582 -0.694 108.061 96.813 1.00 47.27 P
ATOM 25 OP1 C B 582 -0.141 109.437 96.748 1.00 46.17 O
ATOM 26 OP2 C B 582 -1.959 107.828 97.540 1.00 50.14 O
ATOM 27 O5' C B 582 -0.865 107.504 95.331 1.00 45.49 O
TER
ATOM 2 P G A 580 -6.181 104.078 104.700 1.00 59.27 P
ATOM 3 OP1 G A 580 -5.892 105.537 104.703 1.00 57.75 O
ATOM 4 OP2 G A 580 -7.408 103.567 104.028 1.00 59.51 O
ATOM 5 O5' G A 580 -4.951 103.296 104.058 1.00 59.26 O
ATOM 6 C5' G A 580 -3.592 103.584 104.447 1.00 55.65 C
ATOM 7 C4' G A 580 -2.656 102.597 103.798 1.00 54.11 C
ATOM 8 O4' G A 580 -2.959 101.263 104.283 1.00 53.35 O
ATOM 9 C3' G A 580 -2.787 102.481 102.288 1.00 53.08 C
ATOM 10 O3' G A 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 11 C2' G A 580 -2.233 101.090 102.024 1.00 53.83 C
ATOM 12 O2' G A 580 -0.821 101.059 102.009 1.00 56.90 O
ATOM 13 C1' G A 580 -2.753 100.322 103.242 1.00 53.50 C
ATOM 14 N9 G A 580 -4.021 99.658 102.962 1.00 53.12 N
ATOM 15 C8 G A 580 -5.284 100.139 103.212 1.00 53.96 C
ATOM 16 N7 G A 580 -6.226 99.333 102.808 1.00 55.52 N
ATOM 17 C5 G A 580 -5.544 98.251 102.269 1.00 53.82 C
ATOM 18 C6 G A 580 -6.034 97.067 101.671 1.00 54.41 C
ATOM 19 O6 G A 580 -7.208 96.725 101.489 1.00 56.98 O
ATOM 20 N1 G A 580 -4.998 96.235 101.260 1.00 54.91 N
ATOM 21 C2 G A 580 -3.661 96.512 101.405 1.00 54.23 C
ATOM 22 N2 G A 580 -2.812 95.588 100.939 1.00 53.07 N
ATOM 23 N3 G A 580 -3.191 97.615 101.963 1.00 53.13 N
ATOM 24 C4 G A 580 -4.182 98.433 102.368 1.00 52.83 C
ATOM 25 P A A 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 26 OP1 A A 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 27 OP2 A A 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 28 O5' A A 581 -1.684 105.285 99.943 1.00 56.33 O
TER
ATOM 1 O3' G B 580 -2.001 103.453 101.628 1.00 53.58 O
ATOM 2 P A B 581 -2.674 104.810 101.100 1.00 55.99 P
ATOM 3 OP1 A B 581 -2.600 105.794 102.219 1.00 53.87 O
ATOM 4 OP2 A B 581 -3.985 104.502 100.480 1.00 54.87 O
ATOM 5 O5' A B 581 -1.684 105.285 99.943 1.00 56.33 O
ATOM 6 C5' A B 581 -0.316 105.666 100.233 1.00 54.42 C
ATOM 7 C4' A B 581 0.589 105.304 99.074 1.00 54.50 C
ATOM 8 O4' A B 581 0.726 103.861 98.977 1.00 56.27 O
ATOM 9 C3' A B 581 0.090 105.732 97.707 1.00 52.99 C
ATOM 10 O3' A B 581 0.415 107.088 97.446 1.00 49.01 O
ATOM 11 C2' A B 581 0.801 104.761 96.778 1.00 54.96 C
ATOM 12 O2' A B 581 2.136 105.140 96.540 1.00 55.32 O
ATOM 13 C1' A B 581 0.776 103.475 97.611 1.00 58.43 C
ATOM 14 N9 A B 581 -0.395 102.643 97.341 1.00 63.44 N
ATOM 15 C8 A B 581 -1.457 102.420 98.180 1.00 66.60 C
ATOM 16 N7 A B 581 -2.393 101.663 97.662 1.00 69.20 N
ATOM 17 C5 A B 581 -1.914 101.361 96.398 1.00 68.95 C
ATOM 18 C6 A B 581 -2.454 100.606 95.341 1.00 70.38 C
ATOM 19 N6 A B 581 -3.647 100.009 95.393 1.00 71.72 N
ATOM 20 N1 A B 581 -1.722 100.491 94.214 1.00 70.78 N
ATOM 21 C2 A B 581 -0.531 101.105 94.162 1.00 71.59 C
ATOM 22 N3 A B 581 0.080 101.851 95.086 1.00 70.31 N
ATOM 23 C4 A B 581 -0.675 101.943 96.192 1.00 67.22 C
ATOM 24 P C B 582 -0.694 108.061 96.813 1.00 47.27 P
ATOM 25 OP1 C B 582 -0.141 109.437 96.748 1.00 46.17 O
ATOM 26 OP2 C B 582 -1.959 107.828 97.540 1.00 50.14 O
ATOM 27 O5' C B 582 -0.865 107.504 95.331 1.00 45.49 O
TER
Atoms:
OP1: (-5.892,105.537,104.703)
OP2: (-7.408,103.567,104.028)
C3': (-2.787,102.481,102.288)
C1': (-2.753,100.322,103.242)
C5': (-3.592,103.584,104.447)
O6: (-7.208,96.725,101.489)
O4': (-2.959,101.263,104.283)
C8: (-5.284,100.139,103.212)
C2: (-3.661,96.512,101.405)
C6: (-6.034,97.067,101.671)
C5: (-5.544,98.251,102.269)
C4: (-4.182,98.433,102.368)
P: (-6.181,104.078,104.700)
C4': (-2.656,102.597,103.798)
C2': (-2.233,101.090,102.024)
O2': (-0.821,101.059,102.009)
N1: (-4.998,96.235,101.260)
N2: (-2.812,95.588,100.939)
N3: (-3.191,97.615,101.963)
N7: (-6.226,99.333,102.808)
N9: (-4.021,99.658,102.962)
O5': (-4.951,103.296,104.058)
O3': (-2.001,103.453,101.628)
OP2: (-7.408,103.567,104.028)
C3': (-2.787,102.481,102.288)
C1': (-2.753,100.322,103.242)
C5': (-3.592,103.584,104.447)
O6: (-7.208,96.725,101.489)
O4': (-2.959,101.263,104.283)
C8: (-5.284,100.139,103.212)
C2: (-3.661,96.512,101.405)
C6: (-6.034,97.067,101.671)
C5: (-5.544,98.251,102.269)
C4: (-4.182,98.433,102.368)
P: (-6.181,104.078,104.700)
C4': (-2.656,102.597,103.798)
C2': (-2.233,101.090,102.024)
O2': (-0.821,101.059,102.009)
N1: (-4.998,96.235,101.260)
N2: (-2.812,95.588,100.939)
N3: (-3.191,97.615,101.963)
N7: (-6.226,99.333,102.808)
N9: (-4.021,99.658,102.962)
O5': (-4.951,103.296,104.058)
O3': (-2.001,103.453,101.628)
OP1: (-2.600,105.794,102.219)
OP2: (-3.985,104.502,100.480)
C3': (0.090,105.732,97.707)
C1': (0.776,103.475,97.611)
C5': (-0.316,105.666,100.233)
O4': (0.726,103.861,98.977)
C8: (-1.457,102.420,98.180)
O2': (2.136,105.140,96.540)
C6: (-2.454,100.606,95.341)
C5: (-1.914,101.361,96.398)
C4: (-0.675,101.943,96.192)
P: (-2.674,104.810,101.100)
C4': (0.589,105.304,99.074)
C2': (0.801,104.761,96.778)
C2: (-0.531,101.105,94.162)
N1: (-1.722,100.491,94.214)
N3: (0.080,101.851,95.086)
N6: (-3.647,100.009,95.393)
N7: (-2.393,101.663,97.662)
N9: (-0.395,102.643,97.341)
O5': (-1.684,105.285,99.943)
O3': (0.415,107.088,97.446)
OP2: (-3.985,104.502,100.480)
C3': (0.090,105.732,97.707)
C1': (0.776,103.475,97.611)
C5': (-0.316,105.666,100.233)
O4': (0.726,103.861,98.977)
C8: (-1.457,102.420,98.180)
O2': (2.136,105.140,96.540)
C6: (-2.454,100.606,95.341)
C5: (-1.914,101.361,96.398)
C4: (-0.675,101.943,96.192)
P: (-2.674,104.810,101.100)
C4': (0.589,105.304,99.074)
C2': (0.801,104.761,96.778)
C2: (-0.531,101.105,94.162)
N1: (-1.722,100.491,94.214)
N3: (0.080,101.851,95.086)
N6: (-3.647,100.009,95.393)
N7: (-2.393,101.663,97.662)
N9: (-0.395,102.643,97.341)
O5': (-1.684,105.285,99.943)
O3': (0.415,107.088,97.446)
Image (generated by PyMOL):