Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.118 103.584 106.132 1.00 60.18 O
ATOM 2 P G A 580 -6.056 103.995 104.578 1.00 60.85 P
ATOM 3 OP1 G A 580 -5.733 105.447 104.544 1.00 59.54 O
ATOM 4 OP2 G A 580 -7.261 103.488 103.862 1.00 60.04 O
ATOM 5 O5' G A 580 -4.818 103.175 104.005 1.00 61.03 O
ATOM 6 C5' G A 580 -3.468 103.490 104.390 1.00 58.69 C
ATOM 7 C4' G A 580 -2.518 102.521 103.740 1.00 57.46 C
ATOM 8 O4' G A 580 -2.819 101.182 104.212 1.00 57.55 O
ATOM 9 C3' G A 580 -2.650 102.421 102.230 1.00 56.18 C
ATOM 10 O3' G A 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 11 C2' G A 580 -2.102 101.030 101.948 1.00 56.93 C
ATOM 12 O2' G A 580 -0.689 100.994 101.917 1.00 57.27 O
ATOM 13 C1' G A 580 -2.632 100.252 103.157 1.00 57.25 C
ATOM 14 N9 G A 580 -3.915 99.618 102.877 1.00 57.44 N
ATOM 15 C8 G A 580 -5.169 100.136 103.106 1.00 58.14 C
ATOM 16 N7 G A 580 -6.127 99.344 102.713 1.00 59.93 N
ATOM 17 C5 G A 580 -5.468 98.234 102.202 1.00 57.93 C
ATOM 18 C6 G A 580 -5.981 97.045 101.630 1.00 58.44 C
ATOM 19 O6 G A 580 -7.162 96.715 101.462 1.00 60.17 O
ATOM 20 N1 G A 580 -4.961 96.187 101.241 1.00 58.83 N
ATOM 21 C2 G A 580 -3.619 96.434 101.394 1.00 58.42 C
ATOM 22 N2 G A 580 -2.787 95.477 100.966 1.00 58.29 N
ATOM 23 N3 G A 580 -3.130 97.535 101.930 1.00 57.80 N
ATOM 24 C4 G A 580 -4.103 98.386 102.306 1.00 57.36 C
ATOM 25 P A A 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 26 OP1 A A 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 27 OP2 A A 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 28 O5' A A 581 -1.594 105.174 99.791 1.00 56.75 O
TER
ATOM 1 O3' G B 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 2 P A B 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 3 OP1 A B 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 4 OP2 A B 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 5 O5' A B 581 -1.594 105.174 99.791 1.00 56.75 O
ATOM 6 C5' A B 581 -0.254 105.576 100.147 1.00 54.87 C
ATOM 7 C4' A B 581 0.701 105.222 99.031 1.00 55.31 C
ATOM 8 O4' A B 581 0.823 103.778 98.936 1.00 57.01 O
ATOM 9 C3' A B 581 0.243 105.651 97.648 1.00 54.15 C
ATOM 10 O3' A B 581 0.558 107.006 97.380 1.00 50.00 O
ATOM 11 C2' A B 581 0.975 104.674 96.744 1.00 56.44 C
ATOM 12 O2' A B 581 2.323 105.040 96.553 1.00 57.71 O
ATOM 13 C1' A B 581 0.889 103.389 97.572 1.00 59.20 C
ATOM 14 N9 A B 581 -0.328 102.643 97.270 1.00 63.79 N
ATOM 15 C8 A B 581 -1.494 102.629 97.994 1.00 66.63 C
ATOM 16 N7 A B 581 -2.449 101.919 97.449 1.00 69.48 N
ATOM 17 C5 A B 581 -1.871 101.418 96.293 1.00 69.84 C
ATOM 18 C6 A B 581 -2.374 100.602 95.264 1.00 71.49 C
ATOM 19 N6 A B 581 -3.627 100.136 95.235 1.00 72.34 N
ATOM 20 N1 A B 581 -1.539 100.284 94.251 1.00 72.08 N
ATOM 21 C2 A B 581 -0.286 100.763 94.280 1.00 72.21 C
ATOM 22 N3 A B 581 0.301 101.544 95.191 1.00 70.53 N
ATOM 23 C4 A B 581 -0.557 101.840 96.180 1.00 67.99 C
ATOM 24 P C B 582 -0.549 107.951 96.708 1.00 48.21 P
ATOM 25 OP1 C B 582 -0.008 109.325 96.584 1.00 47.52 O
ATOM 26 OP2 C B 582 -1.808 107.735 97.447 1.00 50.56 O
ATOM 27 O5' C B 582 -0.720 107.339 95.248 1.00 46.97 O
TER
ATOM 2 P G A 580 -6.056 103.995 104.578 1.00 60.85 P
ATOM 3 OP1 G A 580 -5.733 105.447 104.544 1.00 59.54 O
ATOM 4 OP2 G A 580 -7.261 103.488 103.862 1.00 60.04 O
ATOM 5 O5' G A 580 -4.818 103.175 104.005 1.00 61.03 O
ATOM 6 C5' G A 580 -3.468 103.490 104.390 1.00 58.69 C
ATOM 7 C4' G A 580 -2.518 102.521 103.740 1.00 57.46 C
ATOM 8 O4' G A 580 -2.819 101.182 104.212 1.00 57.55 O
ATOM 9 C3' G A 580 -2.650 102.421 102.230 1.00 56.18 C
ATOM 10 O3' G A 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 11 C2' G A 580 -2.102 101.030 101.948 1.00 56.93 C
ATOM 12 O2' G A 580 -0.689 100.994 101.917 1.00 57.27 O
ATOM 13 C1' G A 580 -2.632 100.252 103.157 1.00 57.25 C
ATOM 14 N9 G A 580 -3.915 99.618 102.877 1.00 57.44 N
ATOM 15 C8 G A 580 -5.169 100.136 103.106 1.00 58.14 C
ATOM 16 N7 G A 580 -6.127 99.344 102.713 1.00 59.93 N
ATOM 17 C5 G A 580 -5.468 98.234 102.202 1.00 57.93 C
ATOM 18 C6 G A 580 -5.981 97.045 101.630 1.00 58.44 C
ATOM 19 O6 G A 580 -7.162 96.715 101.462 1.00 60.17 O
ATOM 20 N1 G A 580 -4.961 96.187 101.241 1.00 58.83 N
ATOM 21 C2 G A 580 -3.619 96.434 101.394 1.00 58.42 C
ATOM 22 N2 G A 580 -2.787 95.477 100.966 1.00 58.29 N
ATOM 23 N3 G A 580 -3.130 97.535 101.930 1.00 57.80 N
ATOM 24 C4 G A 580 -4.103 98.386 102.306 1.00 57.36 C
ATOM 25 P A A 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 26 OP1 A A 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 27 OP2 A A 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 28 O5' A A 581 -1.594 105.174 99.791 1.00 56.75 O
TER
ATOM 1 O3' G B 580 -1.889 103.417 101.573 1.00 56.04 O
ATOM 2 P A B 581 -2.630 104.661 100.886 1.00 56.53 P
ATOM 3 OP1 A B 581 -2.766 105.706 101.934 1.00 55.25 O
ATOM 4 OP2 A B 581 -3.831 104.174 100.163 1.00 55.35 O
ATOM 5 O5' A B 581 -1.594 105.174 99.791 1.00 56.75 O
ATOM 6 C5' A B 581 -0.254 105.576 100.147 1.00 54.87 C
ATOM 7 C4' A B 581 0.701 105.222 99.031 1.00 55.31 C
ATOM 8 O4' A B 581 0.823 103.778 98.936 1.00 57.01 O
ATOM 9 C3' A B 581 0.243 105.651 97.648 1.00 54.15 C
ATOM 10 O3' A B 581 0.558 107.006 97.380 1.00 50.00 O
ATOM 11 C2' A B 581 0.975 104.674 96.744 1.00 56.44 C
ATOM 12 O2' A B 581 2.323 105.040 96.553 1.00 57.71 O
ATOM 13 C1' A B 581 0.889 103.389 97.572 1.00 59.20 C
ATOM 14 N9 A B 581 -0.328 102.643 97.270 1.00 63.79 N
ATOM 15 C8 A B 581 -1.494 102.629 97.994 1.00 66.63 C
ATOM 16 N7 A B 581 -2.449 101.919 97.449 1.00 69.48 N
ATOM 17 C5 A B 581 -1.871 101.418 96.293 1.00 69.84 C
ATOM 18 C6 A B 581 -2.374 100.602 95.264 1.00 71.49 C
ATOM 19 N6 A B 581 -3.627 100.136 95.235 1.00 72.34 N
ATOM 20 N1 A B 581 -1.539 100.284 94.251 1.00 72.08 N
ATOM 21 C2 A B 581 -0.286 100.763 94.280 1.00 72.21 C
ATOM 22 N3 A B 581 0.301 101.544 95.191 1.00 70.53 N
ATOM 23 C4 A B 581 -0.557 101.840 96.180 1.00 67.99 C
ATOM 24 P C B 582 -0.549 107.951 96.708 1.00 48.21 P
ATOM 25 OP1 C B 582 -0.008 109.325 96.584 1.00 47.52 O
ATOM 26 OP2 C B 582 -1.808 107.735 97.447 1.00 50.56 O
ATOM 27 O5' C B 582 -0.720 107.339 95.248 1.00 46.97 O
TER
Atoms:
OP1: (-5.733,105.447,104.544)
OP2: (-7.261,103.488,103.862)
C3': (-2.650,102.421,102.230)
C1': (-2.632,100.252,103.157)
C5': (-3.468,103.490,104.390)
O6: (-7.162,96.715,101.462)
O4': (-2.819,101.182,104.212)
C8: (-5.169,100.136,103.106)
C2: (-3.619,96.434,101.394)
C6: (-5.981,97.045,101.630)
C5: (-5.468,98.234,102.202)
C4: (-4.103,98.386,102.306)
P: (-6.056,103.995,104.578)
C4': (-2.518,102.521,103.740)
C2': (-2.102,101.030,101.948)
O2': (-0.689,100.994,101.917)
N1: (-4.961,96.187,101.241)
N2: (-2.787,95.477,100.966)
N3: (-3.130,97.535,101.930)
N7: (-6.127,99.344,102.713)
N9: (-3.915,99.618,102.877)
O5': (-4.818,103.175,104.005)
O3': (-1.889,103.417,101.573)
OP2: (-7.261,103.488,103.862)
C3': (-2.650,102.421,102.230)
C1': (-2.632,100.252,103.157)
C5': (-3.468,103.490,104.390)
O6: (-7.162,96.715,101.462)
O4': (-2.819,101.182,104.212)
C8: (-5.169,100.136,103.106)
C2: (-3.619,96.434,101.394)
C6: (-5.981,97.045,101.630)
C5: (-5.468,98.234,102.202)
C4: (-4.103,98.386,102.306)
P: (-6.056,103.995,104.578)
C4': (-2.518,102.521,103.740)
C2': (-2.102,101.030,101.948)
O2': (-0.689,100.994,101.917)
N1: (-4.961,96.187,101.241)
N2: (-2.787,95.477,100.966)
N3: (-3.130,97.535,101.930)
N7: (-6.127,99.344,102.713)
N9: (-3.915,99.618,102.877)
O5': (-4.818,103.175,104.005)
O3': (-1.889,103.417,101.573)
OP1: (-2.766,105.706,101.934)
OP2: (-3.831,104.174,100.163)
C3': (0.243,105.651,97.648)
C1': (0.889,103.389,97.572)
C5': (-0.254,105.576,100.147)
O4': (0.823,103.778,98.936)
C8: (-1.494,102.629,97.994)
O2': (2.323,105.040,96.553)
C6: (-2.374,100.602,95.264)
C5: (-1.871,101.418,96.293)
C4: (-0.557,101.840,96.180)
P: (-2.630,104.661,100.886)
C4': (0.701,105.222,99.031)
C2': (0.975,104.674,96.744)
C2: (-0.286,100.763,94.280)
N1: (-1.539,100.284,94.251)
N3: (0.301,101.544,95.191)
N6: (-3.627,100.136,95.235)
N7: (-2.449,101.919,97.449)
N9: (-0.328,102.643,97.270)
O5': (-1.594,105.174,99.791)
O3': (0.558,107.006,97.380)
OP2: (-3.831,104.174,100.163)
C3': (0.243,105.651,97.648)
C1': (0.889,103.389,97.572)
C5': (-0.254,105.576,100.147)
O4': (0.823,103.778,98.936)
C8: (-1.494,102.629,97.994)
O2': (2.323,105.040,96.553)
C6: (-2.374,100.602,95.264)
C5: (-1.871,101.418,96.293)
C4: (-0.557,101.840,96.180)
P: (-2.630,104.661,100.886)
C4': (0.701,105.222,99.031)
C2': (0.975,104.674,96.744)
C2: (-0.286,100.763,94.280)
N1: (-1.539,100.284,94.251)
N3: (0.301,101.544,95.191)
N6: (-3.627,100.136,95.235)
N7: (-2.449,101.919,97.449)
N9: (-0.328,102.643,97.270)
O5': (-1.594,105.174,99.791)
O3': (0.558,107.006,97.380)
Image (generated by PyMOL):