Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.129 103.766 106.557 1.00 69.96 O
ATOM 2 P G A 580 -6.113 104.211 105.014 1.00 70.94 P
ATOM 3 OP1 G A 580 -5.822 105.676 104.988 1.00 69.07 O
ATOM 4 OP2 G A 580 -7.341 103.686 104.352 1.00 70.32 O
ATOM 5 O5' G A 580 -4.884 103.412 104.385 1.00 71.15 O
ATOM 6 C5' G A 580 -3.514 103.793 104.657 1.00 68.03 C
ATOM 7 C4' G A 580 -2.567 102.836 103.974 1.00 64.80 C
ATOM 8 O4' G A 580 -2.798 101.502 104.493 1.00 63.37 O
ATOM 9 C3' G A 580 -2.765 102.696 102.475 1.00 64.02 C
ATOM 10 O3' G A 580 -2.024 103.670 101.759 1.00 64.00 O
ATOM 11 C2' G A 580 -2.200 101.312 102.199 1.00 64.28 C
ATOM 12 O2' G A 580 -0.793 101.304 102.100 1.00 66.41 O
ATOM 13 C1' G A 580 -2.629 100.552 103.455 1.00 63.79 C
ATOM 14 N9 G A 580 -3.894 99.859 103.259 1.00 62.62 N
ATOM 15 C8 G A 580 -5.144 100.310 103.598 1.00 64.67 C
ATOM 16 N7 G A 580 -6.093 99.482 103.264 1.00 66.19 N
ATOM 17 C5 G A 580 -5.428 98.419 102.676 1.00 63.05 C
ATOM 18 C6 G A 580 -5.932 97.226 102.118 1.00 62.83 C
ATOM 19 O6 G A 580 -7.104 96.853 102.027 1.00 64.53 O
ATOM 20 N1 G A 580 -4.912 96.421 101.635 1.00 63.39 N
ATOM 21 C2 G A 580 -3.578 96.724 101.686 1.00 62.94 C
ATOM 22 N2 G A 580 -2.752 95.811 101.173 1.00 63.46 N
ATOM 23 N3 G A 580 -3.093 97.837 102.204 1.00 62.46 N
ATOM 24 C4 G A 580 -4.069 98.633 102.676 1.00 62.29 C
ATOM 25 P A A 581 -2.722 105.041 101.309 1.00 65.27 P
ATOM 26 OP1 A A 581 -2.716 105.930 102.503 1.00 64.77 O
ATOM 27 OP2 A A 581 -3.995 104.758 100.601 1.00 64.61 O
ATOM 28 O5' A A 581 -1.710 105.644 100.241 1.00 66.14 O
TER
ATOM 1 O3' G B 580 -2.024 103.670 101.759 1.00 64.00 O
ATOM 2 P A B 581 -2.722 105.041 101.309 1.00 65.27 P
ATOM 3 OP1 A B 581 -2.716 105.930 102.503 1.00 64.77 O
ATOM 4 OP2 A B 581 -3.995 104.758 100.601 1.00 64.61 O
ATOM 5 O5' A B 581 -1.710 105.644 100.241 1.00 66.14 O
ATOM 6 C5' A B 581 -0.352 105.960 100.601 1.00 66.49 C
ATOM 7 C4' A B 581 0.587 105.533 99.502 1.00 67.09 C
ATOM 8 O4' A B 581 0.619 104.085 99.434 1.00 68.82 O
ATOM 9 C3' A B 581 0.182 105.951 98.098 1.00 67.04 C
ATOM 10 O3' A B 581 0.527 107.298 97.811 1.00 63.21 O
ATOM 11 C2' A B 581 0.929 104.944 97.239 1.00 69.75 C
ATOM 12 O2' A B 581 2.297 105.256 97.077 1.00 72.21 O
ATOM 13 C1' A B 581 0.784 103.677 98.084 1.00 72.13 C
ATOM 14 N9 A B 581 -0.402 102.928 97.687 1.00 76.46 N
ATOM 15 C8 A B 581 -1.643 102.930 98.269 1.00 78.15 C
ATOM 16 N7 A B 581 -2.525 102.198 97.636 1.00 80.42 N
ATOM 17 C5 A B 581 -1.813 101.667 96.570 1.00 81.61 C
ATOM 18 C6 A B 581 -2.185 100.818 95.505 1.00 83.45 C
ATOM 19 N6 A B 581 -3.424 100.347 95.325 1.00 84.46 N
ATOM 20 N1 A B 581 -1.228 100.473 94.615 1.00 84.58 N
ATOM 21 C2 A B 581 0.010 100.964 94.783 1.00 84.82 C
ATOM 22 N3 A B 581 0.476 101.779 95.733 1.00 82.90 N
ATOM 23 C4 A B 581 -0.498 102.095 96.602 1.00 80.25 C
ATOM 24 P C B 582 -0.530 108.238 97.052 1.00 60.27 P
ATOM 25 OP1 C B 582 0.052 109.590 96.910 1.00 60.03 O
ATOM 26 OP2 C B 582 -1.836 108.077 97.724 1.00 63.76 O
ATOM 27 O5' C B 582 -0.649 107.588 95.606 1.00 58.88 O
TER
ATOM 2 P G A 580 -6.113 104.211 105.014 1.00 70.94 P
ATOM 3 OP1 G A 580 -5.822 105.676 104.988 1.00 69.07 O
ATOM 4 OP2 G A 580 -7.341 103.686 104.352 1.00 70.32 O
ATOM 5 O5' G A 580 -4.884 103.412 104.385 1.00 71.15 O
ATOM 6 C5' G A 580 -3.514 103.793 104.657 1.00 68.03 C
ATOM 7 C4' G A 580 -2.567 102.836 103.974 1.00 64.80 C
ATOM 8 O4' G A 580 -2.798 101.502 104.493 1.00 63.37 O
ATOM 9 C3' G A 580 -2.765 102.696 102.475 1.00 64.02 C
ATOM 10 O3' G A 580 -2.024 103.670 101.759 1.00 64.00 O
ATOM 11 C2' G A 580 -2.200 101.312 102.199 1.00 64.28 C
ATOM 12 O2' G A 580 -0.793 101.304 102.100 1.00 66.41 O
ATOM 13 C1' G A 580 -2.629 100.552 103.455 1.00 63.79 C
ATOM 14 N9 G A 580 -3.894 99.859 103.259 1.00 62.62 N
ATOM 15 C8 G A 580 -5.144 100.310 103.598 1.00 64.67 C
ATOM 16 N7 G A 580 -6.093 99.482 103.264 1.00 66.19 N
ATOM 17 C5 G A 580 -5.428 98.419 102.676 1.00 63.05 C
ATOM 18 C6 G A 580 -5.932 97.226 102.118 1.00 62.83 C
ATOM 19 O6 G A 580 -7.104 96.853 102.027 1.00 64.53 O
ATOM 20 N1 G A 580 -4.912 96.421 101.635 1.00 63.39 N
ATOM 21 C2 G A 580 -3.578 96.724 101.686 1.00 62.94 C
ATOM 22 N2 G A 580 -2.752 95.811 101.173 1.00 63.46 N
ATOM 23 N3 G A 580 -3.093 97.837 102.204 1.00 62.46 N
ATOM 24 C4 G A 580 -4.069 98.633 102.676 1.00 62.29 C
ATOM 25 P A A 581 -2.722 105.041 101.309 1.00 65.27 P
ATOM 26 OP1 A A 581 -2.716 105.930 102.503 1.00 64.77 O
ATOM 27 OP2 A A 581 -3.995 104.758 100.601 1.00 64.61 O
ATOM 28 O5' A A 581 -1.710 105.644 100.241 1.00 66.14 O
TER
ATOM 1 O3' G B 580 -2.024 103.670 101.759 1.00 64.00 O
ATOM 2 P A B 581 -2.722 105.041 101.309 1.00 65.27 P
ATOM 3 OP1 A B 581 -2.716 105.930 102.503 1.00 64.77 O
ATOM 4 OP2 A B 581 -3.995 104.758 100.601 1.00 64.61 O
ATOM 5 O5' A B 581 -1.710 105.644 100.241 1.00 66.14 O
ATOM 6 C5' A B 581 -0.352 105.960 100.601 1.00 66.49 C
ATOM 7 C4' A B 581 0.587 105.533 99.502 1.00 67.09 C
ATOM 8 O4' A B 581 0.619 104.085 99.434 1.00 68.82 O
ATOM 9 C3' A B 581 0.182 105.951 98.098 1.00 67.04 C
ATOM 10 O3' A B 581 0.527 107.298 97.811 1.00 63.21 O
ATOM 11 C2' A B 581 0.929 104.944 97.239 1.00 69.75 C
ATOM 12 O2' A B 581 2.297 105.256 97.077 1.00 72.21 O
ATOM 13 C1' A B 581 0.784 103.677 98.084 1.00 72.13 C
ATOM 14 N9 A B 581 -0.402 102.928 97.687 1.00 76.46 N
ATOM 15 C8 A B 581 -1.643 102.930 98.269 1.00 78.15 C
ATOM 16 N7 A B 581 -2.525 102.198 97.636 1.00 80.42 N
ATOM 17 C5 A B 581 -1.813 101.667 96.570 1.00 81.61 C
ATOM 18 C6 A B 581 -2.185 100.818 95.505 1.00 83.45 C
ATOM 19 N6 A B 581 -3.424 100.347 95.325 1.00 84.46 N
ATOM 20 N1 A B 581 -1.228 100.473 94.615 1.00 84.58 N
ATOM 21 C2 A B 581 0.010 100.964 94.783 1.00 84.82 C
ATOM 22 N3 A B 581 0.476 101.779 95.733 1.00 82.90 N
ATOM 23 C4 A B 581 -0.498 102.095 96.602 1.00 80.25 C
ATOM 24 P C B 582 -0.530 108.238 97.052 1.00 60.27 P
ATOM 25 OP1 C B 582 0.052 109.590 96.910 1.00 60.03 O
ATOM 26 OP2 C B 582 -1.836 108.077 97.724 1.00 63.76 O
ATOM 27 O5' C B 582 -0.649 107.588 95.606 1.00 58.88 O
TER
Atoms:
OP1: (-5.822,105.676,104.988)
OP2: (-7.341,103.686,104.352)
C3': (-2.765,102.696,102.475)
C1': (-2.629,100.552,103.455)
C5': (-3.514,103.793,104.657)
O6: (-7.104,96.853,102.027)
O4': (-2.798,101.502,104.493)
C8: (-5.144,100.310,103.598)
C2: (-3.578,96.724,101.686)
C6: (-5.932,97.226,102.118)
C5: (-5.428,98.419,102.676)
C4: (-4.069,98.633,102.676)
P: (-6.113,104.211,105.014)
C4': (-2.567,102.836,103.974)
C2': (-2.200,101.312,102.199)
O2': (-0.793,101.304,102.100)
N1: (-4.912,96.421,101.635)
N2: (-2.752,95.811,101.173)
N3: (-3.093,97.837,102.204)
N7: (-6.093,99.482,103.264)
N9: (-3.894,99.859,103.259)
O5': (-4.884,103.412,104.385)
O3': (-2.024,103.670,101.759)
OP2: (-7.341,103.686,104.352)
C3': (-2.765,102.696,102.475)
C1': (-2.629,100.552,103.455)
C5': (-3.514,103.793,104.657)
O6: (-7.104,96.853,102.027)
O4': (-2.798,101.502,104.493)
C8: (-5.144,100.310,103.598)
C2: (-3.578,96.724,101.686)
C6: (-5.932,97.226,102.118)
C5: (-5.428,98.419,102.676)
C4: (-4.069,98.633,102.676)
P: (-6.113,104.211,105.014)
C4': (-2.567,102.836,103.974)
C2': (-2.200,101.312,102.199)
O2': (-0.793,101.304,102.100)
N1: (-4.912,96.421,101.635)
N2: (-2.752,95.811,101.173)
N3: (-3.093,97.837,102.204)
N7: (-6.093,99.482,103.264)
N9: (-3.894,99.859,103.259)
O5': (-4.884,103.412,104.385)
O3': (-2.024,103.670,101.759)
OP1: (-2.716,105.930,102.503)
OP2: (-3.995,104.758,100.601)
C3': (0.182,105.951,98.098)
C1': (0.784,103.677,98.084)
C5': (-0.352,105.960,100.601)
O4': (0.619,104.085,99.434)
C8: (-1.643,102.930,98.269)
O2': (2.297,105.256,97.077)
C6: (-2.185,100.818,95.505)
C5: (-1.813,101.667,96.570)
C4: (-0.498,102.095,96.602)
P: (-2.722,105.041,101.309)
C4': (0.587,105.533,99.502)
C2': (0.929,104.944,97.239)
C2: (0.010,100.964,94.783)
N1: (-1.228,100.473,94.615)
N3: (0.476,101.779,95.733)
N6: (-3.424,100.347,95.325)
N7: (-2.525,102.198,97.636)
N9: (-0.402,102.928,97.687)
O5': (-1.710,105.644,100.241)
O3': (0.527,107.298,97.811)
OP2: (-3.995,104.758,100.601)
C3': (0.182,105.951,98.098)
C1': (0.784,103.677,98.084)
C5': (-0.352,105.960,100.601)
O4': (0.619,104.085,99.434)
C8: (-1.643,102.930,98.269)
O2': (2.297,105.256,97.077)
C6: (-2.185,100.818,95.505)
C5: (-1.813,101.667,96.570)
C4: (-0.498,102.095,96.602)
P: (-2.722,105.041,101.309)
C4': (0.587,105.533,99.502)
C2': (0.929,104.944,97.239)
C2: (0.010,100.964,94.783)
N1: (-1.228,100.473,94.615)
N3: (0.476,101.779,95.733)
N6: (-3.424,100.347,95.325)
N7: (-2.525,102.198,97.636)
N9: (-0.402,102.928,97.687)
O5': (-1.710,105.644,100.241)
O3': (0.527,107.298,97.811)
Image (generated by PyMOL):