Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.171 103.540 106.156 1.00 66.86 O
ATOM 2 P G A 580 -6.153 104.014 104.616 1.00 68.59 P
ATOM 3 OP1 G A 580 -5.862 105.478 104.622 1.00 66.98 O
ATOM 4 OP2 G A 580 -7.368 103.506 103.917 1.00 67.60 O
ATOM 5 O5' G A 580 -4.918 103.233 103.979 1.00 67.70 O
ATOM 6 C5' G A 580 -3.559 103.568 104.316 1.00 63.67 C
ATOM 7 C4' G A 580 -2.619 102.586 103.666 1.00 61.40 C
ATOM 8 O4' G A 580 -2.896 101.255 104.173 1.00 61.92 O
ATOM 9 C3' G A 580 -2.784 102.446 102.165 1.00 59.85 C
ATOM 10 O3' G A 580 -2.046 103.433 101.481 1.00 58.36 O
ATOM 11 C2' G A 580 -2.218 101.059 101.906 1.00 61.23 C
ATOM 12 O2' G A 580 -0.805 101.050 101.889 1.00 62.20 O
ATOM 13 C1' G A 580 -2.721 100.301 103.136 1.00 61.61 C
ATOM 14 N9 G A 580 -4.002 99.645 102.907 1.00 62.25 N
ATOM 15 C8 G A 580 -5.245 100.132 103.234 1.00 63.70 C
ATOM 16 N7 G A 580 -6.213 99.324 102.904 1.00 65.97 N
ATOM 17 C5 G A 580 -5.573 98.234 102.326 1.00 64.07 C
ATOM 18 C6 G A 580 -6.107 97.033 101.778 1.00 64.57 C
ATOM 19 O6 G A 580 -7.296 96.670 101.706 1.00 65.05 O
ATOM 20 N1 G A 580 -5.101 96.209 101.289 1.00 63.72 N
ATOM 21 C2 G A 580 -3.760 96.492 101.331 1.00 62.82 C
ATOM 22 N2 G A 580 -2.953 95.568 100.810 1.00 62.65 N
ATOM 23 N3 G A 580 -3.251 97.597 101.844 1.00 62.39 N
ATOM 24 C4 G A 580 -4.207 98.419 102.318 1.00 62.76 C
ATOM 25 P A A 581 -2.784 104.744 100.947 1.00 58.74 P
ATOM 26 OP1 A A 581 -2.909 105.677 102.099 1.00 57.73 O
ATOM 27 OP2 A A 581 -3.988 104.332 100.198 1.00 59.23 O
ATOM 28 O5' A A 581 -1.765 105.355 99.890 1.00 60.79 O
TER
ATOM 1 O3' G B 580 -2.046 103.433 101.481 1.00 58.36 O
ATOM 2 P A B 581 -2.784 104.744 100.947 1.00 58.74 P
ATOM 3 OP1 A B 581 -2.909 105.677 102.099 1.00 57.73 O
ATOM 4 OP2 A B 581 -3.988 104.332 100.198 1.00 59.23 O
ATOM 5 O5' A B 581 -1.765 105.355 99.890 1.00 60.79 O
ATOM 6 C5' A B 581 -0.455 105.819 100.282 1.00 61.11 C
ATOM 7 C4' A B 581 0.554 105.479 99.210 1.00 61.33 C
ATOM 8 O4' A B 581 0.711 104.038 99.146 1.00 62.58 O
ATOM 9 C3' A B 581 0.154 105.878 97.798 1.00 60.00 C
ATOM 10 O3' A B 581 0.465 107.234 97.521 1.00 55.39 O
ATOM 11 C2' A B 581 0.938 104.897 96.938 1.00 61.65 C
ATOM 12 O2' A B 581 2.283 105.281 96.746 1.00 61.94 O
ATOM 13 C1' A B 581 0.873 103.632 97.798 1.00 63.84 C
ATOM 14 N9 A B 581 -0.265 102.790 97.453 1.00 67.18 N
ATOM 15 C8 A B 581 -1.479 102.712 98.085 1.00 69.25 C
ATOM 16 N7 A B 581 -2.322 101.892 97.511 1.00 72.08 N
ATOM 17 C5 A B 581 -1.612 101.389 96.432 1.00 72.64 C
ATOM 18 C6 A B 581 -1.955 100.481 95.416 1.00 74.22 C
ATOM 19 N6 A B 581 -3.154 99.904 95.309 1.00 74.93 N
ATOM 20 N1 A B 581 -1.012 100.189 94.494 1.00 75.85 N
ATOM 21 C2 A B 581 0.188 100.784 94.592 1.00 75.51 C
ATOM 22 N3 A B 581 0.624 101.659 95.496 1.00 73.12 N
ATOM 23 C4 A B 581 -0.337 101.923 96.396 1.00 70.95 C
ATOM 24 P C B 582 -0.589 108.133 96.721 1.00 52.81 P
ATOM 25 OP1 C B 582 0.026 109.453 96.443 1.00 53.17 O
ATOM 26 OP2 C B 582 -1.852 108.071 97.474 1.00 56.69 O
ATOM 27 O5' C B 582 -0.773 107.359 95.342 1.00 51.35 O
TER
ATOM 2 P G A 580 -6.153 104.014 104.616 1.00 68.59 P
ATOM 3 OP1 G A 580 -5.862 105.478 104.622 1.00 66.98 O
ATOM 4 OP2 G A 580 -7.368 103.506 103.917 1.00 67.60 O
ATOM 5 O5' G A 580 -4.918 103.233 103.979 1.00 67.70 O
ATOM 6 C5' G A 580 -3.559 103.568 104.316 1.00 63.67 C
ATOM 7 C4' G A 580 -2.619 102.586 103.666 1.00 61.40 C
ATOM 8 O4' G A 580 -2.896 101.255 104.173 1.00 61.92 O
ATOM 9 C3' G A 580 -2.784 102.446 102.165 1.00 59.85 C
ATOM 10 O3' G A 580 -2.046 103.433 101.481 1.00 58.36 O
ATOM 11 C2' G A 580 -2.218 101.059 101.906 1.00 61.23 C
ATOM 12 O2' G A 580 -0.805 101.050 101.889 1.00 62.20 O
ATOM 13 C1' G A 580 -2.721 100.301 103.136 1.00 61.61 C
ATOM 14 N9 G A 580 -4.002 99.645 102.907 1.00 62.25 N
ATOM 15 C8 G A 580 -5.245 100.132 103.234 1.00 63.70 C
ATOM 16 N7 G A 580 -6.213 99.324 102.904 1.00 65.97 N
ATOM 17 C5 G A 580 -5.573 98.234 102.326 1.00 64.07 C
ATOM 18 C6 G A 580 -6.107 97.033 101.778 1.00 64.57 C
ATOM 19 O6 G A 580 -7.296 96.670 101.706 1.00 65.05 O
ATOM 20 N1 G A 580 -5.101 96.209 101.289 1.00 63.72 N
ATOM 21 C2 G A 580 -3.760 96.492 101.331 1.00 62.82 C
ATOM 22 N2 G A 580 -2.953 95.568 100.810 1.00 62.65 N
ATOM 23 N3 G A 580 -3.251 97.597 101.844 1.00 62.39 N
ATOM 24 C4 G A 580 -4.207 98.419 102.318 1.00 62.76 C
ATOM 25 P A A 581 -2.784 104.744 100.947 1.00 58.74 P
ATOM 26 OP1 A A 581 -2.909 105.677 102.099 1.00 57.73 O
ATOM 27 OP2 A A 581 -3.988 104.332 100.198 1.00 59.23 O
ATOM 28 O5' A A 581 -1.765 105.355 99.890 1.00 60.79 O
TER
ATOM 1 O3' G B 580 -2.046 103.433 101.481 1.00 58.36 O
ATOM 2 P A B 581 -2.784 104.744 100.947 1.00 58.74 P
ATOM 3 OP1 A B 581 -2.909 105.677 102.099 1.00 57.73 O
ATOM 4 OP2 A B 581 -3.988 104.332 100.198 1.00 59.23 O
ATOM 5 O5' A B 581 -1.765 105.355 99.890 1.00 60.79 O
ATOM 6 C5' A B 581 -0.455 105.819 100.282 1.00 61.11 C
ATOM 7 C4' A B 581 0.554 105.479 99.210 1.00 61.33 C
ATOM 8 O4' A B 581 0.711 104.038 99.146 1.00 62.58 O
ATOM 9 C3' A B 581 0.154 105.878 97.798 1.00 60.00 C
ATOM 10 O3' A B 581 0.465 107.234 97.521 1.00 55.39 O
ATOM 11 C2' A B 581 0.938 104.897 96.938 1.00 61.65 C
ATOM 12 O2' A B 581 2.283 105.281 96.746 1.00 61.94 O
ATOM 13 C1' A B 581 0.873 103.632 97.798 1.00 63.84 C
ATOM 14 N9 A B 581 -0.265 102.790 97.453 1.00 67.18 N
ATOM 15 C8 A B 581 -1.479 102.712 98.085 1.00 69.25 C
ATOM 16 N7 A B 581 -2.322 101.892 97.511 1.00 72.08 N
ATOM 17 C5 A B 581 -1.612 101.389 96.432 1.00 72.64 C
ATOM 18 C6 A B 581 -1.955 100.481 95.416 1.00 74.22 C
ATOM 19 N6 A B 581 -3.154 99.904 95.309 1.00 74.93 N
ATOM 20 N1 A B 581 -1.012 100.189 94.494 1.00 75.85 N
ATOM 21 C2 A B 581 0.188 100.784 94.592 1.00 75.51 C
ATOM 22 N3 A B 581 0.624 101.659 95.496 1.00 73.12 N
ATOM 23 C4 A B 581 -0.337 101.923 96.396 1.00 70.95 C
ATOM 24 P C B 582 -0.589 108.133 96.721 1.00 52.81 P
ATOM 25 OP1 C B 582 0.026 109.453 96.443 1.00 53.17 O
ATOM 26 OP2 C B 582 -1.852 108.071 97.474 1.00 56.69 O
ATOM 27 O5' C B 582 -0.773 107.359 95.342 1.00 51.35 O
TER
Atoms:
OP1: (-5.862,105.478,104.622)
OP2: (-7.368,103.506,103.917)
C3': (-2.784,102.446,102.165)
C1': (-2.721,100.301,103.136)
C5': (-3.559,103.568,104.316)
O6: (-7.296,96.670,101.706)
O4': (-2.896,101.255,104.173)
C8: (-5.245,100.132,103.234)
C2: (-3.760,96.492,101.331)
C6: (-6.107,97.033,101.778)
C5: (-5.573,98.234,102.326)
C4: (-4.207,98.419,102.318)
P: (-6.153,104.014,104.616)
C4': (-2.619,102.586,103.666)
C2': (-2.218,101.059,101.906)
O2': (-0.805,101.050,101.889)
N1: (-5.101,96.209,101.289)
N2: (-2.953,95.568,100.810)
N3: (-3.251,97.597,101.844)
N7: (-6.213,99.324,102.904)
N9: (-4.002,99.645,102.907)
O5': (-4.918,103.233,103.979)
O3': (-2.046,103.433,101.481)
OP2: (-7.368,103.506,103.917)
C3': (-2.784,102.446,102.165)
C1': (-2.721,100.301,103.136)
C5': (-3.559,103.568,104.316)
O6: (-7.296,96.670,101.706)
O4': (-2.896,101.255,104.173)
C8: (-5.245,100.132,103.234)
C2: (-3.760,96.492,101.331)
C6: (-6.107,97.033,101.778)
C5: (-5.573,98.234,102.326)
C4: (-4.207,98.419,102.318)
P: (-6.153,104.014,104.616)
C4': (-2.619,102.586,103.666)
C2': (-2.218,101.059,101.906)
O2': (-0.805,101.050,101.889)
N1: (-5.101,96.209,101.289)
N2: (-2.953,95.568,100.810)
N3: (-3.251,97.597,101.844)
N7: (-6.213,99.324,102.904)
N9: (-4.002,99.645,102.907)
O5': (-4.918,103.233,103.979)
O3': (-2.046,103.433,101.481)
OP1: (-2.909,105.677,102.099)
OP2: (-3.988,104.332,100.198)
C3': (0.154,105.878,97.798)
C1': (0.873,103.632,97.798)
C5': (-0.455,105.819,100.282)
O4': (0.711,104.038,99.146)
C8: (-1.479,102.712,98.085)
O2': (2.283,105.281,96.746)
C6: (-1.955,100.481,95.416)
C5: (-1.612,101.389,96.432)
C4: (-0.337,101.923,96.396)
P: (-2.784,104.744,100.947)
C4': (0.554,105.479,99.210)
C2': (0.938,104.897,96.938)
C2: (0.188,100.784,94.592)
N1: (-1.012,100.189,94.494)
N3: (0.624,101.659,95.496)
N6: (-3.154,99.904,95.309)
N7: (-2.322,101.892,97.511)
N9: (-0.265,102.790,97.453)
O5': (-1.765,105.355,99.890)
O3': (0.465,107.234,97.521)
OP2: (-3.988,104.332,100.198)
C3': (0.154,105.878,97.798)
C1': (0.873,103.632,97.798)
C5': (-0.455,105.819,100.282)
O4': (0.711,104.038,99.146)
C8: (-1.479,102.712,98.085)
O2': (2.283,105.281,96.746)
C6: (-1.955,100.481,95.416)
C5: (-1.612,101.389,96.432)
C4: (-0.337,101.923,96.396)
P: (-2.784,104.744,100.947)
C4': (0.554,105.479,99.210)
C2': (0.938,104.897,96.938)
C2: (0.188,100.784,94.592)
N1: (-1.012,100.189,94.494)
N3: (0.624,101.659,95.496)
N6: (-3.154,99.904,95.309)
N7: (-2.322,101.892,97.511)
N9: (-0.265,102.790,97.453)
O5': (-1.765,105.355,99.890)
O3': (0.465,107.234,97.521)
Image (generated by PyMOL):