Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJW:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.264 103.421 106.118 1.00 58.53 O
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' G B 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 2 P A B 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 3 OP1 A B 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 4 OP2 A B 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 5 O5' A B 581 -1.858 105.115 99.798 1.00 58.76 O
ATOM 6 C5' A B 581 -0.550 105.605 100.147 1.00 58.47 C
ATOM 7 C4' A B 581 0.438 105.263 99.060 1.00 57.95 C
ATOM 8 O4' A B 581 0.625 103.824 99.004 1.00 59.63 O
ATOM 9 C3' A B 581 0.002 105.640 97.658 1.00 56.48 C
ATOM 10 O3' A B 581 0.266 107.006 97.392 1.00 53.41 O
ATOM 11 C2' A B 581 0.820 104.684 96.805 1.00 58.00 C
ATOM 12 O2' A B 581 2.162 105.104 96.680 1.00 57.96 O
ATOM 13 C1' A B 581 0.759 103.409 97.654 1.00 59.97 C
ATOM 14 N9 A B 581 -0.410 102.594 97.329 1.00 62.70 N
ATOM 15 C8 A B 581 -1.597 102.546 98.012 1.00 63.71 C
ATOM 16 N7 A B 581 -2.502 101.790 97.447 1.00 65.61 N
ATOM 17 C5 A B 581 -1.866 101.294 96.322 1.00 65.98 C
ATOM 18 C6 A B 581 -2.303 100.453 95.289 1.00 67.89 C
ATOM 19 N6 A B 581 -3.545 99.964 95.208 1.00 69.65 N
ATOM 20 N1 A B 581 -1.418 100.137 94.319 1.00 69.06 N
ATOM 21 C2 A B 581 -0.184 100.649 94.390 1.00 69.33 C
ATOM 22 N3 A B 581 0.341 101.466 95.305 1.00 68.23 N
ATOM 23 C4 A B 581 -0.565 101.756 96.253 1.00 65.37 C
ATOM 24 P C B 582 -0.871 107.916 96.715 1.00 52.29 P
ATOM 25 OP1 C B 582 -0.314 109.285 96.593 1.00 52.63 O
ATOM 26 OP2 C B 582 -2.142 107.709 97.446 1.00 54.01 O
ATOM 27 O5' C B 582 -1.022 107.296 95.258 1.00 51.03 O
TER
ATOM 2 P G A 580 -6.297 103.829 104.564 1.00 59.06 P
ATOM 3 OP1 G A 580 -6.009 105.285 104.510 1.00 57.81 O
ATOM 4 OP2 G A 580 -7.542 103.301 103.939 1.00 58.23 O
ATOM 5 O5' G A 580 -5.072 103.035 103.926 1.00 58.31 O
ATOM 6 C5' G A 580 -3.713 103.349 104.282 1.00 57.49 C
ATOM 7 C4' G A 580 -2.772 102.370 103.629 1.00 57.45 C
ATOM 8 O4' G A 580 -3.074 101.040 104.119 1.00 57.41 O
ATOM 9 C3' G A 580 -2.911 102.252 102.120 1.00 57.28 C
ATOM 10 O3' G A 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 11 C2' G A 580 -2.382 100.852 101.851 1.00 57.04 C
ATOM 12 O2' G A 580 -0.969 100.790 101.840 1.00 55.62 O
ATOM 13 C1' G A 580 -2.917 100.099 103.069 1.00 57.63 C
ATOM 14 N9 G A 580 -4.209 99.462 102.830 1.00 57.95 N
ATOM 15 C8 G A 580 -5.454 99.964 103.131 1.00 58.87 C
ATOM 16 N7 G A 580 -6.424 99.155 102.802 1.00 60.17 N
ATOM 17 C5 G A 580 -5.781 98.054 102.250 1.00 58.95 C
ATOM 18 C6 G A 580 -6.311 96.850 101.716 1.00 59.22 C
ATOM 19 O6 G A 580 -7.494 96.496 101.631 1.00 60.08 O
ATOM 20 N1 G A 580 -5.304 96.013 101.257 1.00 59.14 N
ATOM 21 C2 G A 580 -3.962 96.288 101.310 1.00 58.87 C
ATOM 22 N2 G A 580 -3.147 95.352 100.814 1.00 59.30 N
ATOM 23 N3 G A 580 -3.455 97.398 101.811 1.00 58.34 N
ATOM 24 C4 G A 580 -4.415 98.231 102.258 1.00 58.07 C
ATOM 25 P A A 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 26 OP1 A A 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 27 OP2 A A 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 28 O5' A A 581 -1.858 105.115 99.798 1.00 58.76 O
TER
ATOM 1 O3' G B 580 -2.143 103.236 101.447 1.00 58.17 O
ATOM 2 P A B 581 -2.853 104.572 100.916 1.00 59.14 P
ATOM 3 OP1 A B 581 -2.831 105.520 102.062 1.00 58.57 O
ATOM 4 OP2 A B 581 -4.144 104.233 100.262 1.00 57.84 O
ATOM 5 O5' A B 581 -1.858 105.115 99.798 1.00 58.76 O
ATOM 6 C5' A B 581 -0.550 105.605 100.147 1.00 58.47 C
ATOM 7 C4' A B 581 0.438 105.263 99.060 1.00 57.95 C
ATOM 8 O4' A B 581 0.625 103.824 99.004 1.00 59.63 O
ATOM 9 C3' A B 581 0.002 105.640 97.658 1.00 56.48 C
ATOM 10 O3' A B 581 0.266 107.006 97.392 1.00 53.41 O
ATOM 11 C2' A B 581 0.820 104.684 96.805 1.00 58.00 C
ATOM 12 O2' A B 581 2.162 105.104 96.680 1.00 57.96 O
ATOM 13 C1' A B 581 0.759 103.409 97.654 1.00 59.97 C
ATOM 14 N9 A B 581 -0.410 102.594 97.329 1.00 62.70 N
ATOM 15 C8 A B 581 -1.597 102.546 98.012 1.00 63.71 C
ATOM 16 N7 A B 581 -2.502 101.790 97.447 1.00 65.61 N
ATOM 17 C5 A B 581 -1.866 101.294 96.322 1.00 65.98 C
ATOM 18 C6 A B 581 -2.303 100.453 95.289 1.00 67.89 C
ATOM 19 N6 A B 581 -3.545 99.964 95.208 1.00 69.65 N
ATOM 20 N1 A B 581 -1.418 100.137 94.319 1.00 69.06 N
ATOM 21 C2 A B 581 -0.184 100.649 94.390 1.00 69.33 C
ATOM 22 N3 A B 581 0.341 101.466 95.305 1.00 68.23 N
ATOM 23 C4 A B 581 -0.565 101.756 96.253 1.00 65.37 C
ATOM 24 P C B 582 -0.871 107.916 96.715 1.00 52.29 P
ATOM 25 OP1 C B 582 -0.314 109.285 96.593 1.00 52.63 O
ATOM 26 OP2 C B 582 -2.142 107.709 97.446 1.00 54.01 O
ATOM 27 O5' C B 582 -1.022 107.296 95.258 1.00 51.03 O
TER
Atoms:
OP1: (-6.009,105.285,104.510)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP2: (-7.542,103.301,103.939)
C3': (-2.911,102.252,102.120)
C1': (-2.917,100.099,103.069)
C5': (-3.713,103.349,104.282)
O6: (-7.494,96.496,101.631)
O4': (-3.074,101.040,104.119)
C8: (-5.454,99.964,103.131)
C2: (-3.962,96.288,101.310)
C6: (-6.311,96.850,101.716)
C5: (-5.781,98.054,102.250)
C4: (-4.415,98.231,102.258)
P: (-6.297,103.829,104.564)
C4': (-2.772,102.370,103.629)
C2': (-2.382,100.852,101.851)
O2': (-0.969,100.790,101.840)
N1: (-5.304,96.013,101.257)
N2: (-3.147,95.352,100.814)
N3: (-3.455,97.398,101.811)
N7: (-6.424,99.155,102.802)
N9: (-4.209,99.462,102.830)
O5': (-5.072,103.035,103.926)
O3': (-2.143,103.236,101.447)
OP1: (-2.831,105.520,102.062)
OP2: (-4.144,104.233,100.262)
C3': (0.002,105.640,97.658)
C1': (0.759,103.409,97.654)
C5': (-0.550,105.605,100.147)
O4': (0.625,103.824,99.004)
C8: (-1.597,102.546,98.012)
O2': (2.162,105.104,96.680)
C6: (-2.303,100.453,95.289)
C5: (-1.866,101.294,96.322)
C4: (-0.565,101.756,96.253)
P: (-2.853,104.572,100.916)
C4': (0.438,105.263,99.060)
C2': (0.820,104.684,96.805)
C2: (-0.184,100.649,94.390)
N1: (-1.418,100.137,94.319)
N3: (0.341,101.466,95.305)
N6: (-3.545,99.964,95.208)
N7: (-2.502,101.790,97.447)
N9: (-0.410,102.594,97.329)
O5': (-1.858,105.115,99.798)
O3': (0.266,107.006,97.392)
OP2: (-4.144,104.233,100.262)
C3': (0.002,105.640,97.658)
C1': (0.759,103.409,97.654)
C5': (-0.550,105.605,100.147)
O4': (0.625,103.824,99.004)
C8: (-1.597,102.546,98.012)
O2': (2.162,105.104,96.680)
C6: (-2.303,100.453,95.289)
C5: (-1.866,101.294,96.322)
C4: (-0.565,101.756,96.253)
P: (-2.853,104.572,100.916)
C4': (0.438,105.263,99.060)
C2': (0.820,104.684,96.805)
C2: (-0.184,100.649,94.390)
N1: (-1.418,100.137,94.319)
N3: (0.341,101.466,95.305)
N6: (-3.545,99.964,95.208)
N7: (-2.502,101.790,97.447)
N9: (-0.410,102.594,97.329)
O5': (-1.858,105.115,99.798)
O3': (0.266,107.006,97.392)
Image (generated by PyMOL):