Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:A79:A80
Extra
PDB:
ATOM 1 O3' G A 78 6.558 -41.180 3.309 1.00 75.26 O
ATOM 2 P G A 79 5.460 -40.067 2.983 1.00 74.99 P
ATOM 3 OP1 G A 79 4.484 -40.644 2.024 1.00 75.88 O
ATOM 4 OP2 G A 79 6.176 -38.812 2.658 1.00 74.23 O
ATOM 5 O5' G A 79 4.741 -39.861 4.399 1.00 73.81 O
ATOM 6 C5' G A 79 3.875 -40.871 4.919 1.00 73.32 C
ATOM 7 C4' G A 79 3.532 -40.604 6.371 1.00 71.80 C
ATOM 8 O4' G A 79 4.746 -40.511 7.163 1.00 71.39 O
ATOM 9 C3' G A 79 2.821 -39.288 6.639 1.00 70.83 C
ATOM 10 O3' G A 79 1.431 -39.378 6.325 1.00 70.22 O
ATOM 11 C2' G A 79 3.125 -39.115 8.126 1.00 70.16 C
ATOM 12 O2' G A 79 2.388 -39.996 8.951 1.00 69.81 O
ATOM 13 C1' G A 79 4.598 -39.516 8.160 1.00 70.56 C
ATOM 14 N9 G A 79 5.534 -38.419 7.893 1.00 70.81 N
ATOM 15 C8 G A 79 6.105 -38.106 6.682 1.00 71.85 C
ATOM 16 N7 G A 79 6.902 -37.076 6.722 1.00 72.02 N
ATOM 17 C5 G A 79 6.865 -36.669 8.049 1.00 71.13 C
ATOM 18 C6 G A 79 7.539 -35.594 8.692 1.00 70.94 C
ATOM 19 O6 G A 79 8.322 -34.765 8.199 1.00 71.70 O
ATOM 20 N1 G A 79 7.229 -35.522 10.049 1.00 70.06 N
ATOM 21 C2 G A 79 6.374 -36.386 10.698 1.00 69.82 C
ATOM 22 N2 G A 79 6.195 -36.165 12.009 1.00 69.47 N
ATOM 23 N3 G A 79 5.741 -37.397 10.105 1.00 69.90 N
ATOM 24 C4 G A 79 6.027 -37.486 8.782 1.00 70.45 C
ATOM 25 P A A 80 0.853 -38.634 5.024 1.00 70.31 P
ATOM 26 OP1 A A 80 1.077 -39.496 3.837 1.00 71.19 O
ATOM 27 OP2 A A 80 1.365 -37.245 5.038 1.00 69.74 O
ATOM 28 O5' A A 80 -0.718 -38.565 5.308 1.00 69.42 O
TER
ATOM 1 O3' G B 79 1.431 -39.378 6.325 1.00 70.22 O
ATOM 2 P A B 80 0.853 -38.634 5.024 1.00 70.31 P
ATOM 3 OP1 A B 80 1.077 -39.496 3.837 1.00 71.19 O
ATOM 4 OP2 A B 80 1.365 -37.245 5.038 1.00 69.74 O
ATOM 5 O5' A B 80 -0.718 -38.565 5.308 1.00 69.42 O
ATOM 6 C5' A B 80 -1.528 -39.724 5.194 1.00 68.80 C
ATOM 7 C4' A B 80 -2.493 -39.801 6.356 1.00 67.39 C
ATOM 8 O4' A B 80 -1.741 -39.860 7.593 1.00 66.84 O
ATOM 9 C3' A B 80 -3.393 -38.594 6.554 1.00 66.77 C
ATOM 10 O3' A B 80 -4.513 -38.625 5.691 1.00 67.31 O
ATOM 11 C2' A B 80 -3.781 -38.779 8.017 1.00 66.06 C
ATOM 12 O2' A B 80 -4.697 -39.832 8.240 1.00 65.76 O
ATOM 13 C1' A B 80 -2.422 -39.139 8.604 1.00 66.14 C
ATOM 14 N9 A B 80 -1.662 -37.945 8.975 1.00 66.00 N
ATOM 15 C8 A B 80 -0.652 -37.353 8.267 1.00 66.78 C
ATOM 16 N7 A B 80 -0.155 -36.278 8.831 1.00 66.52 N
ATOM 17 C5 A B 80 -0.898 -36.153 9.991 1.00 65.53 C
ATOM 18 C6 A B 80 -0.861 -35.210 11.035 1.00 64.66 C
ATOM 19 N6 A B 80 -0.004 -34.188 11.053 1.00 64.23 N
ATOM 20 N1 A B 80 -1.731 -35.364 12.057 1.00 64.41 N
ATOM 21 C2 A B 80 -2.589 -36.396 12.028 1.00 64.54 C
ATOM 22 N3 A B 80 -2.714 -37.347 11.100 1.00 65.01 N
ATOM 23 C4 A B 80 -1.833 -37.168 10.098 1.00 65.43 C
ATOM 24 P C B 81 -4.657 -37.595 4.471 1.00 67.66 P
ATOM 25 OP1 C B 81 -5.876 -37.982 3.727 1.00 68.95 O
ATOM 26 OP2 C B 81 -3.357 -37.500 3.775 1.00 67.87 O
ATOM 27 O5' C B 81 -4.914 -36.175 5.153 1.00 67.11 O
TER
ATOM 2 P G A 79 5.460 -40.067 2.983 1.00 74.99 P
ATOM 3 OP1 G A 79 4.484 -40.644 2.024 1.00 75.88 O
ATOM 4 OP2 G A 79 6.176 -38.812 2.658 1.00 74.23 O
ATOM 5 O5' G A 79 4.741 -39.861 4.399 1.00 73.81 O
ATOM 6 C5' G A 79 3.875 -40.871 4.919 1.00 73.32 C
ATOM 7 C4' G A 79 3.532 -40.604 6.371 1.00 71.80 C
ATOM 8 O4' G A 79 4.746 -40.511 7.163 1.00 71.39 O
ATOM 9 C3' G A 79 2.821 -39.288 6.639 1.00 70.83 C
ATOM 10 O3' G A 79 1.431 -39.378 6.325 1.00 70.22 O
ATOM 11 C2' G A 79 3.125 -39.115 8.126 1.00 70.16 C
ATOM 12 O2' G A 79 2.388 -39.996 8.951 1.00 69.81 O
ATOM 13 C1' G A 79 4.598 -39.516 8.160 1.00 70.56 C
ATOM 14 N9 G A 79 5.534 -38.419 7.893 1.00 70.81 N
ATOM 15 C8 G A 79 6.105 -38.106 6.682 1.00 71.85 C
ATOM 16 N7 G A 79 6.902 -37.076 6.722 1.00 72.02 N
ATOM 17 C5 G A 79 6.865 -36.669 8.049 1.00 71.13 C
ATOM 18 C6 G A 79 7.539 -35.594 8.692 1.00 70.94 C
ATOM 19 O6 G A 79 8.322 -34.765 8.199 1.00 71.70 O
ATOM 20 N1 G A 79 7.229 -35.522 10.049 1.00 70.06 N
ATOM 21 C2 G A 79 6.374 -36.386 10.698 1.00 69.82 C
ATOM 22 N2 G A 79 6.195 -36.165 12.009 1.00 69.47 N
ATOM 23 N3 G A 79 5.741 -37.397 10.105 1.00 69.90 N
ATOM 24 C4 G A 79 6.027 -37.486 8.782 1.00 70.45 C
ATOM 25 P A A 80 0.853 -38.634 5.024 1.00 70.31 P
ATOM 26 OP1 A A 80 1.077 -39.496 3.837 1.00 71.19 O
ATOM 27 OP2 A A 80 1.365 -37.245 5.038 1.00 69.74 O
ATOM 28 O5' A A 80 -0.718 -38.565 5.308 1.00 69.42 O
TER
ATOM 1 O3' G B 79 1.431 -39.378 6.325 1.00 70.22 O
ATOM 2 P A B 80 0.853 -38.634 5.024 1.00 70.31 P
ATOM 3 OP1 A B 80 1.077 -39.496 3.837 1.00 71.19 O
ATOM 4 OP2 A B 80 1.365 -37.245 5.038 1.00 69.74 O
ATOM 5 O5' A B 80 -0.718 -38.565 5.308 1.00 69.42 O
ATOM 6 C5' A B 80 -1.528 -39.724 5.194 1.00 68.80 C
ATOM 7 C4' A B 80 -2.493 -39.801 6.356 1.00 67.39 C
ATOM 8 O4' A B 80 -1.741 -39.860 7.593 1.00 66.84 O
ATOM 9 C3' A B 80 -3.393 -38.594 6.554 1.00 66.77 C
ATOM 10 O3' A B 80 -4.513 -38.625 5.691 1.00 67.31 O
ATOM 11 C2' A B 80 -3.781 -38.779 8.017 1.00 66.06 C
ATOM 12 O2' A B 80 -4.697 -39.832 8.240 1.00 65.76 O
ATOM 13 C1' A B 80 -2.422 -39.139 8.604 1.00 66.14 C
ATOM 14 N9 A B 80 -1.662 -37.945 8.975 1.00 66.00 N
ATOM 15 C8 A B 80 -0.652 -37.353 8.267 1.00 66.78 C
ATOM 16 N7 A B 80 -0.155 -36.278 8.831 1.00 66.52 N
ATOM 17 C5 A B 80 -0.898 -36.153 9.991 1.00 65.53 C
ATOM 18 C6 A B 80 -0.861 -35.210 11.035 1.00 64.66 C
ATOM 19 N6 A B 80 -0.004 -34.188 11.053 1.00 64.23 N
ATOM 20 N1 A B 80 -1.731 -35.364 12.057 1.00 64.41 N
ATOM 21 C2 A B 80 -2.589 -36.396 12.028 1.00 64.54 C
ATOM 22 N3 A B 80 -2.714 -37.347 11.100 1.00 65.01 N
ATOM 23 C4 A B 80 -1.833 -37.168 10.098 1.00 65.43 C
ATOM 24 P C B 81 -4.657 -37.595 4.471 1.00 67.66 P
ATOM 25 OP1 C B 81 -5.876 -37.982 3.727 1.00 68.95 O
ATOM 26 OP2 C B 81 -3.357 -37.500 3.775 1.00 67.87 O
ATOM 27 O5' C B 81 -4.914 -36.175 5.153 1.00 67.11 O
TER
Atoms:
OP1: (4.484,-40.644,2.024)
OP2: (6.176,-38.812,2.658)
C3': (2.821,-39.288,6.639)
C1': (4.598,-39.516,8.160)
C5': (3.875,-40.871,4.919)
O6: (8.322,-34.765,8.199)
O4': (4.746,-40.511,7.163)
C8: (6.105,-38.106,6.682)
C2: (6.374,-36.386,10.698)
C6: (7.539,-35.594,8.692)
C5: (6.865,-36.669,8.049)
C4: (6.027,-37.486,8.782)
P: (5.460,-40.067,2.983)
C4': (3.532,-40.604,6.371)
C2': (3.125,-39.115,8.126)
O2': (2.388,-39.996,8.951)
N1: (7.229,-35.522,10.049)
N2: (6.195,-36.165,12.009)
N3: (5.741,-37.397,10.105)
N7: (6.902,-37.076,6.722)
N9: (5.534,-38.419,7.893)
O5': (4.741,-39.861,4.399)
O3': (1.431,-39.378,6.325)
OP2: (6.176,-38.812,2.658)
C3': (2.821,-39.288,6.639)
C1': (4.598,-39.516,8.160)
C5': (3.875,-40.871,4.919)
O6: (8.322,-34.765,8.199)
O4': (4.746,-40.511,7.163)
C8: (6.105,-38.106,6.682)
C2: (6.374,-36.386,10.698)
C6: (7.539,-35.594,8.692)
C5: (6.865,-36.669,8.049)
C4: (6.027,-37.486,8.782)
P: (5.460,-40.067,2.983)
C4': (3.532,-40.604,6.371)
C2': (3.125,-39.115,8.126)
O2': (2.388,-39.996,8.951)
N1: (7.229,-35.522,10.049)
N2: (6.195,-36.165,12.009)
N3: (5.741,-37.397,10.105)
N7: (6.902,-37.076,6.722)
N9: (5.534,-38.419,7.893)
O5': (4.741,-39.861,4.399)
O3': (1.431,-39.378,6.325)
OP1: (1.077,-39.496,3.837)
OP2: (1.365,-37.245,5.038)
C3': (-3.393,-38.594,6.554)
C1': (-2.422,-39.139,8.604)
C5': (-1.528,-39.724,5.194)
O4': (-1.741,-39.860,7.593)
C8: (-0.652,-37.353,8.267)
O2': (-4.697,-39.832,8.240)
C6: (-0.861,-35.210,11.035)
C5: (-0.898,-36.153,9.991)
C4: (-1.833,-37.168,10.098)
P: (0.853,-38.634,5.024)
C4': (-2.493,-39.801,6.356)
C2': (-3.781,-38.779,8.017)
C2: (-2.589,-36.396,12.028)
N1: (-1.731,-35.364,12.057)
N3: (-2.714,-37.347,11.100)
N6: (-0.004,-34.188,11.053)
N7: (-0.155,-36.278,8.831)
N9: (-1.662,-37.945,8.975)
O5': (-0.718,-38.565,5.308)
O3': (-4.513,-38.625,5.691)
OP2: (1.365,-37.245,5.038)
C3': (-3.393,-38.594,6.554)
C1': (-2.422,-39.139,8.604)
C5': (-1.528,-39.724,5.194)
O4': (-1.741,-39.860,7.593)
C8: (-0.652,-37.353,8.267)
O2': (-4.697,-39.832,8.240)
C6: (-0.861,-35.210,11.035)
C5: (-0.898,-36.153,9.991)
C4: (-1.833,-37.168,10.098)
P: (0.853,-38.634,5.024)
C4': (-2.493,-39.801,6.356)
C2': (-3.781,-38.779,8.017)
C2: (-2.589,-36.396,12.028)
N1: (-1.731,-35.364,12.057)
N3: (-2.714,-37.347,11.100)
N6: (-0.004,-34.188,11.053)
N7: (-0.155,-36.278,8.831)
N9: (-1.662,-37.945,8.975)
O5': (-0.718,-38.565,5.308)
O3': (-4.513,-38.625,5.691)
Image (generated by PyMOL):