Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0345:0282
Extra
PDB:
ATOM 1 O3' C A 344 53.206 120.713 15.327 1.00 59.13 O
ATOM 2 P A A 345 54.234 120.347 14.140 1.00 61.14 P
ATOM 3 OP1 A A 345 53.447 120.011 12.924 1.00 60.54 O
ATOM 4 OP2 A A 345 55.232 119.371 14.659 1.00 59.34 O
ATOM 5 O5' A A 345 54.995 121.711 13.851 1.00 61.28 O
ATOM 6 C5' A A 345 56.126 121.743 12.972 1.00 63.00 C
ATOM 7 C4' A A 345 56.157 123.046 12.218 1.00 64.12 C
ATOM 8 O4' A A 345 55.124 123.044 11.190 1.00 65.18 O
ATOM 9 C3' A A 345 55.919 124.292 13.065 1.00 64.74 C
ATOM 10 O3' A A 345 56.749 125.336 12.586 1.00 66.34 O
ATOM 11 C2' A A 345 54.447 124.600 12.798 1.00 65.27 C
ATOM 12 O2' A A 345 54.104 125.962 12.967 1.00 64.87 O
ATOM 13 C1' A A 345 54.315 124.192 11.333 1.00 65.10 C
ATOM 14 N9 A A 345 52.945 123.869 10.926 1.00 65.89 N
ATOM 15 C8 A A 345 52.191 122.765 11.249 1.00 66.62 C
ATOM 16 N7 A A 345 50.978 122.786 10.746 1.00 66.83 N
ATOM 17 C5 A A 345 50.929 123.981 10.038 1.00 66.66 C
ATOM 18 C6 A A 345 49.908 124.598 9.277 1.00 66.37 C
ATOM 19 N6 A A 345 48.693 124.073 9.095 1.00 65.49 N
ATOM 20 N1 A A 345 50.187 125.791 8.705 1.00 65.87 N
ATOM 21 C2 A A 345 51.407 126.320 8.883 1.00 66.70 C
ATOM 22 N3 A A 345 52.446 125.839 9.570 1.00 66.48 N
ATOM 23 C4 A A 345 52.138 124.654 10.133 1.00 66.83 C
ATOM 24 P G A 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 25 OP1 G A 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 26 OP2 G A 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 27 O5' G A 346 59.178 125.742 12.055 1.00 69.26 O
TER
ATOM 1 O3' A B 281 46.352 126.599 5.640 1.00 73.77 O
ATOM 2 P C B 282 45.422 126.439 6.939 1.00 74.78 P
ATOM 3 OP1 C B 282 44.583 127.662 7.052 1.00 74.69 O
ATOM 4 OP2 C B 282 46.287 126.033 8.079 1.00 74.93 O
ATOM 5 O5' C B 282 44.466 125.220 6.569 1.00 76.08 O
ATOM 6 C5' C B 282 43.638 125.268 5.392 1.00 76.99 C
ATOM 7 C4' C B 282 42.914 123.958 5.206 1.00 77.67 C
ATOM 8 O4' C B 282 43.876 122.890 5.010 1.00 78.21 O
ATOM 9 C3' C B 282 42.089 123.498 6.393 1.00 78.44 C
ATOM 10 O3' C B 282 40.817 124.123 6.407 1.00 80.64 O
ATOM 11 C2' C B 282 41.988 122.000 6.153 1.00 78.55 C
ATOM 12 O2' C B 282 41.006 121.676 5.189 1.00 78.78 O
ATOM 13 C1' C B 282 43.383 121.695 5.595 1.00 78.21 C
ATOM 14 N1 C B 282 44.336 121.245 6.628 1.00 78.36 N
ATOM 15 C2 C B 282 44.353 119.888 6.986 1.00 78.18 C
ATOM 16 O2 C B 282 43.585 119.103 6.409 1.00 78.66 O
ATOM 17 N3 C B 282 45.207 119.468 7.949 1.00 77.71 N
ATOM 18 C4 C B 282 46.028 120.339 8.540 1.00 76.91 C
ATOM 19 N4 C B 282 46.850 119.879 9.484 1.00 74.57 N
ATOM 20 C5 C B 282 46.041 121.722 8.188 1.00 77.31 C
ATOM 21 C6 C B 282 45.187 122.128 7.238 1.00 77.96 C
ATOM 22 P C B 283 40.184 124.603 7.802 1.00 83.35 P
ATOM 23 OP1 C B 283 38.802 125.086 7.519 1.00 83.63 O
ATOM 24 OP2 C B 283 41.161 125.511 8.468 1.00 82.85 O
ATOM 25 O5' C B 283 40.073 123.260 8.654 1.00 81.93 O
TER
ATOM 2 P A A 345 54.234 120.347 14.140 1.00 61.14 P
ATOM 3 OP1 A A 345 53.447 120.011 12.924 1.00 60.54 O
ATOM 4 OP2 A A 345 55.232 119.371 14.659 1.00 59.34 O
ATOM 5 O5' A A 345 54.995 121.711 13.851 1.00 61.28 O
ATOM 6 C5' A A 345 56.126 121.743 12.972 1.00 63.00 C
ATOM 7 C4' A A 345 56.157 123.046 12.218 1.00 64.12 C
ATOM 8 O4' A A 345 55.124 123.044 11.190 1.00 65.18 O
ATOM 9 C3' A A 345 55.919 124.292 13.065 1.00 64.74 C
ATOM 10 O3' A A 345 56.749 125.336 12.586 1.00 66.34 O
ATOM 11 C2' A A 345 54.447 124.600 12.798 1.00 65.27 C
ATOM 12 O2' A A 345 54.104 125.962 12.967 1.00 64.87 O
ATOM 13 C1' A A 345 54.315 124.192 11.333 1.00 65.10 C
ATOM 14 N9 A A 345 52.945 123.869 10.926 1.00 65.89 N
ATOM 15 C8 A A 345 52.191 122.765 11.249 1.00 66.62 C
ATOM 16 N7 A A 345 50.978 122.786 10.746 1.00 66.83 N
ATOM 17 C5 A A 345 50.929 123.981 10.038 1.00 66.66 C
ATOM 18 C6 A A 345 49.908 124.598 9.277 1.00 66.37 C
ATOM 19 N6 A A 345 48.693 124.073 9.095 1.00 65.49 N
ATOM 20 N1 A A 345 50.187 125.791 8.705 1.00 65.87 N
ATOM 21 C2 A A 345 51.407 126.320 8.883 1.00 66.70 C
ATOM 22 N3 A A 345 52.446 125.839 9.570 1.00 66.48 N
ATOM 23 C4 A A 345 52.138 124.654 10.133 1.00 66.83 C
ATOM 24 P G A 346 58.172 125.601 13.283 1.00 66.87 P
ATOM 25 OP1 G A 346 58.563 124.375 14.015 1.00 68.08 O
ATOM 26 OP2 G A 346 58.089 126.893 14.003 1.00 66.83 O
ATOM 27 O5' G A 346 59.178 125.742 12.055 1.00 69.26 O
TER
ATOM 1 O3' A B 281 46.352 126.599 5.640 1.00 73.77 O
ATOM 2 P C B 282 45.422 126.439 6.939 1.00 74.78 P
ATOM 3 OP1 C B 282 44.583 127.662 7.052 1.00 74.69 O
ATOM 4 OP2 C B 282 46.287 126.033 8.079 1.00 74.93 O
ATOM 5 O5' C B 282 44.466 125.220 6.569 1.00 76.08 O
ATOM 6 C5' C B 282 43.638 125.268 5.392 1.00 76.99 C
ATOM 7 C4' C B 282 42.914 123.958 5.206 1.00 77.67 C
ATOM 8 O4' C B 282 43.876 122.890 5.010 1.00 78.21 O
ATOM 9 C3' C B 282 42.089 123.498 6.393 1.00 78.44 C
ATOM 10 O3' C B 282 40.817 124.123 6.407 1.00 80.64 O
ATOM 11 C2' C B 282 41.988 122.000 6.153 1.00 78.55 C
ATOM 12 O2' C B 282 41.006 121.676 5.189 1.00 78.78 O
ATOM 13 C1' C B 282 43.383 121.695 5.595 1.00 78.21 C
ATOM 14 N1 C B 282 44.336 121.245 6.628 1.00 78.36 N
ATOM 15 C2 C B 282 44.353 119.888 6.986 1.00 78.18 C
ATOM 16 O2 C B 282 43.585 119.103 6.409 1.00 78.66 O
ATOM 17 N3 C B 282 45.207 119.468 7.949 1.00 77.71 N
ATOM 18 C4 C B 282 46.028 120.339 8.540 1.00 76.91 C
ATOM 19 N4 C B 282 46.850 119.879 9.484 1.00 74.57 N
ATOM 20 C5 C B 282 46.041 121.722 8.188 1.00 77.31 C
ATOM 21 C6 C B 282 45.187 122.128 7.238 1.00 77.96 C
ATOM 22 P C B 283 40.184 124.603 7.802 1.00 83.35 P
ATOM 23 OP1 C B 283 38.802 125.086 7.519 1.00 83.63 O
ATOM 24 OP2 C B 283 41.161 125.511 8.468 1.00 82.85 O
ATOM 25 O5' C B 283 40.073 123.260 8.654 1.00 81.93 O
TER
Atoms:
OP1: (53.447,120.011,12.924)
OP2: (55.232,119.371,14.659)
C3': (55.919,124.292,13.065)
C1': (54.315,124.192,11.333)
C5': (56.126,121.743,12.972)
O4': (55.124,123.044,11.190)
C8: (52.191,122.765,11.249)
O2': (54.104,125.962,12.967)
C6: (49.908,124.598,9.277)
C5: (50.929,123.981,10.038)
C4: (52.138,124.654,10.133)
P: (54.234,120.347,14.140)
C4': (56.157,123.046,12.218)
C2': (54.447,124.600,12.798)
C2: (51.407,126.320,8.883)
N1: (50.187,125.791,8.705)
N3: (52.446,125.839,9.570)
N6: (48.693,124.073,9.095)
N7: (50.978,122.786,10.746)
N9: (52.945,123.869,10.926)
O5': (54.995,121.711,13.851)
O3': (56.749,125.336,12.586)
OP2: (55.232,119.371,14.659)
C3': (55.919,124.292,13.065)
C1': (54.315,124.192,11.333)
C5': (56.126,121.743,12.972)
O4': (55.124,123.044,11.190)
C8: (52.191,122.765,11.249)
O2': (54.104,125.962,12.967)
C6: (49.908,124.598,9.277)
C5: (50.929,123.981,10.038)
C4: (52.138,124.654,10.133)
P: (54.234,120.347,14.140)
C4': (56.157,123.046,12.218)
C2': (54.447,124.600,12.798)
C2: (51.407,126.320,8.883)
N1: (50.187,125.791,8.705)
N3: (52.446,125.839,9.570)
N6: (48.693,124.073,9.095)
N7: (50.978,122.786,10.746)
N9: (52.945,123.869,10.926)
O5': (54.995,121.711,13.851)
O3': (56.749,125.336,12.586)
C2: (44.353,119.888,6.986)
OP1: (44.583,127.662,7.052)
OP2: (46.287,126.033,8.079)
C4: (46.028,120.339,8.540)
O5': (44.466,125.220,6.569)
C3': (42.089,123.498,6.393)
C1': (43.383,121.695,5.595)
O4': (43.876,122.890,5.010)
C5': (43.638,125.268,5.392)
P: (45.422,126.439,6.939)
O2: (43.585,119.103,6.409)
C4': (42.914,123.958,5.206)
C2': (41.988,122.000,6.153)
O2': (41.006,121.676,5.189)
N1: (44.336,121.245,6.628)
N3: (45.207,119.468,7.949)
N4: (46.850,119.879,9.484)
C6: (45.187,122.128,7.238)
C5: (46.041,121.722,8.188)
O3': (40.817,124.123,6.407)
OP1: (44.583,127.662,7.052)
OP2: (46.287,126.033,8.079)
C4: (46.028,120.339,8.540)
O5': (44.466,125.220,6.569)
C3': (42.089,123.498,6.393)
C1': (43.383,121.695,5.595)
O4': (43.876,122.890,5.010)
C5': (43.638,125.268,5.392)
P: (45.422,126.439,6.939)
O2: (43.585,119.103,6.409)
C4': (42.914,123.958,5.206)
C2': (41.988,122.000,6.153)
O2': (41.006,121.676,5.189)
N1: (44.336,121.245,6.628)
N3: (45.207,119.468,7.949)
N4: (46.850,119.879,9.484)
C6: (45.187,122.128,7.238)
C5: (46.041,121.722,8.188)
O3': (40.817,124.123,6.407)
Image (generated by PyMOL):