Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0234:0235
Extra
PDB:
ATOM 1 O3' C A 233 92.669 112.126 -9.539 1.00 60.74 O
ATOM 2 P G A 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 3 OP1 G A 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 4 OP2 G A 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 5 O5' G A 234 93.972 114.077 -8.714 1.00 59.27 O
ATOM 6 C5' G A 234 92.805 114.899 -8.900 1.00 59.95 C
ATOM 7 C4' G A 234 92.855 116.077 -7.970 1.00 60.78 C
ATOM 8 O4' G A 234 92.644 115.613 -6.606 1.00 61.70 O
ATOM 9 C3' G A 234 94.194 116.800 -7.977 1.00 60.35 C
ATOM 10 O3' G A 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 11 C2' G A 234 94.918 116.173 -6.792 1.00 60.00 C
ATOM 12 O2' G A 234 95.926 116.989 -6.235 1.00 58.16 O
ATOM 13 C1' G A 234 93.766 115.945 -5.815 1.00 61.18 C
ATOM 14 N9 G A 234 94.023 114.849 -4.884 1.00 62.43 N
ATOM 15 C8 G A 234 94.601 113.633 -5.172 1.00 62.57 C
ATOM 16 N7 G A 234 94.793 112.894 -4.114 1.00 63.92 N
ATOM 17 C5 G A 234 94.295 113.658 -3.066 1.00 64.17 C
ATOM 18 C6 G A 234 94.257 113.391 -1.671 1.00 64.34 C
ATOM 19 O6 G A 234 94.690 112.406 -1.062 1.00 63.34 O
ATOM 20 N1 G A 234 93.649 114.428 -0.970 1.00 64.46 N
ATOM 21 C2 G A 234 93.151 115.577 -1.533 1.00 63.72 C
ATOM 22 N2 G A 234 92.585 116.449 -0.688 1.00 63.48 N
ATOM 23 N3 G A 234 93.200 115.848 -2.827 1.00 62.97 N
ATOM 24 C4 G A 234 93.784 114.853 -3.529 1.00 62.94 C
ATOM 25 P A A 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 26 OP1 A A 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 27 OP2 A A 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 28 O5' A A 235 93.781 120.558 -8.621 1.00 58.09 O
TER
ATOM 1 O3' G B 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 2 P A B 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 3 OP1 A B 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 4 OP2 A B 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 5 O5' A B 235 93.781 120.558 -8.621 1.00 58.09 O
ATOM 6 C5' A B 235 92.398 120.698 -9.002 1.00 59.12 C
ATOM 7 C4' A B 235 91.774 121.849 -8.254 1.00 59.68 C
ATOM 8 O4' A B 235 91.660 121.500 -6.844 1.00 59.65 O
ATOM 9 C3' A B 235 92.581 123.143 -8.299 1.00 58.85 C
ATOM 10 O3' A B 235 91.692 124.245 -8.193 1.00 59.72 O
ATOM 11 C2' A B 235 93.407 123.044 -7.023 1.00 58.49 C
ATOM 12 O2' A B 235 93.876 124.286 -6.547 1.00 57.25 O
ATOM 13 C1' A B 235 92.380 122.436 -6.070 1.00 59.07 C
ATOM 14 N9 A B 235 92.947 121.752 -4.910 1.00 59.17 N
ATOM 15 C8 A B 235 93.690 120.597 -4.871 1.00 59.70 C
ATOM 16 N7 A B 235 94.071 120.255 -3.665 1.00 58.53 N
ATOM 17 C5 A B 235 93.536 121.248 -2.854 1.00 57.77 C
ATOM 18 C6 A B 235 93.588 121.465 -1.472 1.00 55.94 C
ATOM 19 N6 A B 235 94.231 120.668 -0.622 1.00 55.44 N
ATOM 20 N1 A B 235 92.951 122.547 -0.984 1.00 56.28 N
ATOM 21 C2 A B 235 92.310 123.353 -1.835 1.00 57.67 C
ATOM 22 N3 A B 235 92.191 123.258 -3.153 1.00 58.57 N
ATOM 23 C4 A B 235 92.836 122.171 -3.607 1.00 58.29 C
ATOM 24 P A B 236 91.150 124.961 -9.520 1.00 61.43 P
ATOM 25 OP1 A B 236 92.215 124.834 -10.550 1.00 61.63 O
ATOM 26 OP2 A B 236 90.656 126.307 -9.127 1.00 60.13 O
ATOM 27 O5' A B 236 89.894 124.084 -9.968 1.00 59.69 O
TER
ATOM 2 P G A 234 94.151 112.746 -9.561 1.00 62.42 P
ATOM 3 OP1 G A 234 94.476 113.130 -10.965 1.00 64.66 O
ATOM 4 OP2 G A 234 95.046 111.805 -8.830 1.00 59.26 O
ATOM 5 O5' G A 234 93.972 114.077 -8.714 1.00 59.27 O
ATOM 6 C5' G A 234 92.805 114.899 -8.900 1.00 59.95 C
ATOM 7 C4' G A 234 92.855 116.077 -7.970 1.00 60.78 C
ATOM 8 O4' G A 234 92.644 115.613 -6.606 1.00 61.70 O
ATOM 9 C3' G A 234 94.194 116.800 -7.977 1.00 60.35 C
ATOM 10 O3' G A 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 11 C2' G A 234 94.918 116.173 -6.792 1.00 60.00 C
ATOM 12 O2' G A 234 95.926 116.989 -6.235 1.00 58.16 O
ATOM 13 C1' G A 234 93.766 115.945 -5.815 1.00 61.18 C
ATOM 14 N9 G A 234 94.023 114.849 -4.884 1.00 62.43 N
ATOM 15 C8 G A 234 94.601 113.633 -5.172 1.00 62.57 C
ATOM 16 N7 G A 234 94.793 112.894 -4.114 1.00 63.92 N
ATOM 17 C5 G A 234 94.295 113.658 -3.066 1.00 64.17 C
ATOM 18 C6 G A 234 94.257 113.391 -1.671 1.00 64.34 C
ATOM 19 O6 G A 234 94.690 112.406 -1.062 1.00 63.34 O
ATOM 20 N1 G A 234 93.649 114.428 -0.970 1.00 64.46 N
ATOM 21 C2 G A 234 93.151 115.577 -1.533 1.00 63.72 C
ATOM 22 N2 G A 234 92.585 116.449 -0.688 1.00 63.48 N
ATOM 23 N3 G A 234 93.200 115.848 -2.827 1.00 62.97 N
ATOM 24 C4 G A 234 93.784 114.853 -3.529 1.00 62.94 C
ATOM 25 P A A 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 26 OP1 A A 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 27 OP2 A A 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 28 O5' A A 235 93.781 120.558 -8.621 1.00 58.09 O
TER
ATOM 1 O3' G B 234 94.001 118.193 -7.803 1.00 61.34 O
ATOM 2 P A B 235 94.568 119.207 -8.909 1.00 60.10 P
ATOM 3 OP1 A B 235 94.128 118.691 -10.230 1.00 61.24 O
ATOM 4 OP2 A B 235 96.020 119.406 -8.643 1.00 58.40 O
ATOM 5 O5' A B 235 93.781 120.558 -8.621 1.00 58.09 O
ATOM 6 C5' A B 235 92.398 120.698 -9.002 1.00 59.12 C
ATOM 7 C4' A B 235 91.774 121.849 -8.254 1.00 59.68 C
ATOM 8 O4' A B 235 91.660 121.500 -6.844 1.00 59.65 O
ATOM 9 C3' A B 235 92.581 123.143 -8.299 1.00 58.85 C
ATOM 10 O3' A B 235 91.692 124.245 -8.193 1.00 59.72 O
ATOM 11 C2' A B 235 93.407 123.044 -7.023 1.00 58.49 C
ATOM 12 O2' A B 235 93.876 124.286 -6.547 1.00 57.25 O
ATOM 13 C1' A B 235 92.380 122.436 -6.070 1.00 59.07 C
ATOM 14 N9 A B 235 92.947 121.752 -4.910 1.00 59.17 N
ATOM 15 C8 A B 235 93.690 120.597 -4.871 1.00 59.70 C
ATOM 16 N7 A B 235 94.071 120.255 -3.665 1.00 58.53 N
ATOM 17 C5 A B 235 93.536 121.248 -2.854 1.00 57.77 C
ATOM 18 C6 A B 235 93.588 121.465 -1.472 1.00 55.94 C
ATOM 19 N6 A B 235 94.231 120.668 -0.622 1.00 55.44 N
ATOM 20 N1 A B 235 92.951 122.547 -0.984 1.00 56.28 N
ATOM 21 C2 A B 235 92.310 123.353 -1.835 1.00 57.67 C
ATOM 22 N3 A B 235 92.191 123.258 -3.153 1.00 58.57 N
ATOM 23 C4 A B 235 92.836 122.171 -3.607 1.00 58.29 C
ATOM 24 P A B 236 91.150 124.961 -9.520 1.00 61.43 P
ATOM 25 OP1 A B 236 92.215 124.834 -10.550 1.00 61.63 O
ATOM 26 OP2 A B 236 90.656 126.307 -9.127 1.00 60.13 O
ATOM 27 O5' A B 236 89.894 124.084 -9.968 1.00 59.69 O
TER
Atoms:
OP1: (94.476,113.130,-10.965)
OP2: (95.046,111.805,-8.830)
C3': (94.194,116.800,-7.977)
C1': (93.766,115.945,-5.815)
C5': (92.805,114.899,-8.900)
O6: (94.690,112.406,-1.062)
O4': (92.644,115.613,-6.606)
C8: (94.601,113.633,-5.172)
C2: (93.151,115.577,-1.533)
C6: (94.257,113.391,-1.671)
C5: (94.295,113.658,-3.066)
C4: (93.784,114.853,-3.529)
P: (94.151,112.746,-9.561)
C4': (92.855,116.077,-7.970)
C2': (94.918,116.173,-6.792)
O2': (95.926,116.989,-6.235)
N1: (93.649,114.428,-0.970)
N2: (92.585,116.449,-0.688)
N3: (93.200,115.848,-2.827)
N7: (94.793,112.894,-4.114)
N9: (94.023,114.849,-4.884)
O5': (93.972,114.077,-8.714)
O3': (94.001,118.193,-7.803)
OP2: (95.046,111.805,-8.830)
C3': (94.194,116.800,-7.977)
C1': (93.766,115.945,-5.815)
C5': (92.805,114.899,-8.900)
O6: (94.690,112.406,-1.062)
O4': (92.644,115.613,-6.606)
C8: (94.601,113.633,-5.172)
C2: (93.151,115.577,-1.533)
C6: (94.257,113.391,-1.671)
C5: (94.295,113.658,-3.066)
C4: (93.784,114.853,-3.529)
P: (94.151,112.746,-9.561)
C4': (92.855,116.077,-7.970)
C2': (94.918,116.173,-6.792)
O2': (95.926,116.989,-6.235)
N1: (93.649,114.428,-0.970)
N2: (92.585,116.449,-0.688)
N3: (93.200,115.848,-2.827)
N7: (94.793,112.894,-4.114)
N9: (94.023,114.849,-4.884)
O5': (93.972,114.077,-8.714)
O3': (94.001,118.193,-7.803)
OP1: (94.128,118.691,-10.230)
OP2: (96.020,119.406,-8.643)
C3': (92.581,123.143,-8.299)
C1': (92.380,122.436,-6.070)
C5': (92.398,120.698,-9.002)
O4': (91.660,121.500,-6.844)
C8: (93.690,120.597,-4.871)
O2': (93.876,124.286,-6.547)
C6: (93.588,121.465,-1.472)
C5: (93.536,121.248,-2.854)
C4: (92.836,122.171,-3.607)
P: (94.568,119.207,-8.909)
C4': (91.774,121.849,-8.254)
C2': (93.407,123.044,-7.023)
C2: (92.310,123.353,-1.835)
N1: (92.951,122.547,-0.984)
N3: (92.191,123.258,-3.153)
N6: (94.231,120.668,-0.622)
N7: (94.071,120.255,-3.665)
N9: (92.947,121.752,-4.910)
O5': (93.781,120.558,-8.621)
O3': (91.692,124.245,-8.193)
OP2: (96.020,119.406,-8.643)
C3': (92.581,123.143,-8.299)
C1': (92.380,122.436,-6.070)
C5': (92.398,120.698,-9.002)
O4': (91.660,121.500,-6.844)
C8: (93.690,120.597,-4.871)
O2': (93.876,124.286,-6.547)
C6: (93.588,121.465,-1.472)
C5: (93.536,121.248,-2.854)
C4: (92.836,122.171,-3.607)
P: (94.568,119.207,-8.909)
C4': (91.774,121.849,-8.254)
C2': (93.407,123.044,-7.023)
C2: (92.310,123.353,-1.835)
N1: (92.951,122.547,-0.984)
N3: (92.191,123.258,-3.153)
N6: (94.231,120.668,-0.622)
N7: (94.071,120.255,-3.665)
N9: (92.947,121.752,-4.910)
O5': (93.781,120.558,-8.621)
O3': (91.692,124.245,-8.193)
Image (generated by PyMOL):