Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIT:0234:0235
Extra
PDB:
ATOM 1 O3' C A 233 92.720 111.881 -9.464 1.00 58.99 O
ATOM 2 P G A 234 94.212 112.466 -9.499 1.00 61.67 P
ATOM 3 OP1 G A 234 94.560 112.836 -10.901 1.00 62.63 O
ATOM 4 OP2 G A 234 95.071 111.498 -8.766 1.00 58.97 O
ATOM 5 O5' G A 234 94.062 113.800 -8.648 1.00 59.66 O
ATOM 6 C5' G A 234 92.924 114.660 -8.848 1.00 60.82 C
ATOM 7 C4' G A 234 92.997 115.840 -7.918 1.00 62.89 C
ATOM 8 O4' G A 234 92.757 115.389 -6.555 1.00 65.10 O
ATOM 9 C3' G A 234 94.350 116.540 -7.906 1.00 62.89 C
ATOM 10 O3' G A 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 11 C2' G A 234 95.047 115.904 -6.709 1.00 63.36 C
ATOM 12 O2' G A 234 96.055 116.708 -6.134 1.00 63.40 O
ATOM 13 C1' G A 234 93.877 115.694 -5.750 1.00 64.59 C
ATOM 14 N9 G A 234 94.100 114.586 -4.823 1.00 65.28 N
ATOM 15 C8 G A 234 94.613 113.342 -5.114 1.00 65.08 C
ATOM 16 N7 G A 234 94.780 112.597 -4.056 1.00 65.85 N
ATOM 17 C5 G A 234 94.336 113.390 -3.006 1.00 66.91 C
ATOM 18 C6 G A 234 94.300 113.133 -1.609 1.00 67.15 C
ATOM 19 O6 G A 234 94.695 112.136 -0.999 1.00 67.35 O
ATOM 20 N1 G A 234 93.745 114.200 -0.908 1.00 67.27 N
ATOM 21 C2 G A 234 93.297 115.369 -1.472 1.00 67.31 C
ATOM 22 N2 G A 234 92.768 116.270 -0.631 1.00 68.04 N
ATOM 23 N3 G A 234 93.355 115.633 -2.766 1.00 66.78 N
ATOM 24 C4 G A 234 93.882 114.607 -3.468 1.00 66.13 C
ATOM 25 P A A 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 26 OP1 A A 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 27 OP2 A A 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 28 O5' A A 235 93.932 120.265 -8.673 1.00 58.09 O
TER
ATOM 1 O3' G B 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 2 P A B 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 3 OP1 A B 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 4 OP2 A B 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 5 O5' A B 235 93.932 120.265 -8.673 1.00 58.09 O
ATOM 6 C5' A B 235 92.527 120.301 -8.982 1.00 56.77 C
ATOM 7 C4' A B 235 91.877 121.448 -8.247 1.00 57.52 C
ATOM 8 O4' A B 235 91.794 121.130 -6.829 1.00 57.67 O
ATOM 9 C3' A B 235 92.642 122.766 -8.330 1.00 57.00 C
ATOM 10 O3' A B 235 91.721 123.834 -8.215 1.00 57.89 O
ATOM 11 C2' A B 235 93.491 122.725 -7.067 1.00 56.85 C
ATOM 12 O2' A B 235 93.916 123.998 -6.631 1.00 54.59 O
ATOM 13 C1' A B 235 92.498 122.105 -6.087 1.00 57.43 C
ATOM 14 N9 A B 235 93.100 121.460 -4.923 1.00 58.07 N
ATOM 15 C8 A B 235 93.864 120.320 -4.870 1.00 58.74 C
ATOM 16 N7 A B 235 94.259 120.005 -3.661 1.00 58.50 N
ATOM 17 C5 A B 235 93.715 121.004 -2.864 1.00 58.02 C
ATOM 18 C6 A B 235 93.772 121.245 -1.486 1.00 56.89 C
ATOM 19 N6 A B 235 94.432 120.470 -0.625 1.00 56.62 N
ATOM 20 N1 A B 235 93.122 122.328 -1.014 1.00 57.08 N
ATOM 21 C2 A B 235 92.468 123.111 -1.875 1.00 57.35 C
ATOM 22 N3 A B 235 92.343 122.992 -3.189 1.00 57.90 N
ATOM 23 C4 A B 235 92.999 121.904 -3.628 1.00 58.12 C
ATOM 24 P A B 236 91.347 124.703 -9.502 1.00 59.50 P
ATOM 25 OP1 A B 236 92.412 124.478 -10.517 1.00 59.25 O
ATOM 26 OP2 A B 236 91.056 126.083 -9.031 1.00 59.33 O
ATOM 27 O5' A B 236 89.989 124.052 -10.032 1.00 57.95 O
TER
ATOM 2 P G A 234 94.212 112.466 -9.499 1.00 61.67 P
ATOM 3 OP1 G A 234 94.560 112.836 -10.901 1.00 62.63 O
ATOM 4 OP2 G A 234 95.071 111.498 -8.766 1.00 58.97 O
ATOM 5 O5' G A 234 94.062 113.800 -8.648 1.00 59.66 O
ATOM 6 C5' G A 234 92.924 114.660 -8.848 1.00 60.82 C
ATOM 7 C4' G A 234 92.997 115.840 -7.918 1.00 62.89 C
ATOM 8 O4' G A 234 92.757 115.389 -6.555 1.00 65.10 O
ATOM 9 C3' G A 234 94.350 116.540 -7.906 1.00 62.89 C
ATOM 10 O3' G A 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 11 C2' G A 234 95.047 115.904 -6.709 1.00 63.36 C
ATOM 12 O2' G A 234 96.055 116.708 -6.134 1.00 63.40 O
ATOM 13 C1' G A 234 93.877 115.694 -5.750 1.00 64.59 C
ATOM 14 N9 G A 234 94.100 114.586 -4.823 1.00 65.28 N
ATOM 15 C8 G A 234 94.613 113.342 -5.114 1.00 65.08 C
ATOM 16 N7 G A 234 94.780 112.597 -4.056 1.00 65.85 N
ATOM 17 C5 G A 234 94.336 113.390 -3.006 1.00 66.91 C
ATOM 18 C6 G A 234 94.300 113.133 -1.609 1.00 67.15 C
ATOM 19 O6 G A 234 94.695 112.136 -0.999 1.00 67.35 O
ATOM 20 N1 G A 234 93.745 114.200 -0.908 1.00 67.27 N
ATOM 21 C2 G A 234 93.297 115.369 -1.472 1.00 67.31 C
ATOM 22 N2 G A 234 92.768 116.270 -0.631 1.00 68.04 N
ATOM 23 N3 G A 234 93.355 115.633 -2.766 1.00 66.78 N
ATOM 24 C4 G A 234 93.882 114.607 -3.468 1.00 66.13 C
ATOM 25 P A A 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 26 OP1 A A 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 27 OP2 A A 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 28 O5' A A 235 93.932 120.265 -8.673 1.00 58.09 O
TER
ATOM 1 O3' G B 234 94.178 117.939 -7.747 1.00 61.74 O
ATOM 2 P A B 235 94.784 118.936 -8.852 1.00 59.51 P
ATOM 3 OP1 A B 235 94.489 118.372 -10.190 1.00 61.07 O
ATOM 4 OP2 A B 235 96.190 119.225 -8.473 1.00 59.33 O
ATOM 5 O5' A B 235 93.932 120.265 -8.673 1.00 58.09 O
ATOM 6 C5' A B 235 92.527 120.301 -8.982 1.00 56.77 C
ATOM 7 C4' A B 235 91.877 121.448 -8.247 1.00 57.52 C
ATOM 8 O4' A B 235 91.794 121.130 -6.829 1.00 57.67 O
ATOM 9 C3' A B 235 92.642 122.766 -8.330 1.00 57.00 C
ATOM 10 O3' A B 235 91.721 123.834 -8.215 1.00 57.89 O
ATOM 11 C2' A B 235 93.491 122.725 -7.067 1.00 56.85 C
ATOM 12 O2' A B 235 93.916 123.998 -6.631 1.00 54.59 O
ATOM 13 C1' A B 235 92.498 122.105 -6.087 1.00 57.43 C
ATOM 14 N9 A B 235 93.100 121.460 -4.923 1.00 58.07 N
ATOM 15 C8 A B 235 93.864 120.320 -4.870 1.00 58.74 C
ATOM 16 N7 A B 235 94.259 120.005 -3.661 1.00 58.50 N
ATOM 17 C5 A B 235 93.715 121.004 -2.864 1.00 58.02 C
ATOM 18 C6 A B 235 93.772 121.245 -1.486 1.00 56.89 C
ATOM 19 N6 A B 235 94.432 120.470 -0.625 1.00 56.62 N
ATOM 20 N1 A B 235 93.122 122.328 -1.014 1.00 57.08 N
ATOM 21 C2 A B 235 92.468 123.111 -1.875 1.00 57.35 C
ATOM 22 N3 A B 235 92.343 122.992 -3.189 1.00 57.90 N
ATOM 23 C4 A B 235 92.999 121.904 -3.628 1.00 58.12 C
ATOM 24 P A B 236 91.347 124.703 -9.502 1.00 59.50 P
ATOM 25 OP1 A B 236 92.412 124.478 -10.517 1.00 59.25 O
ATOM 26 OP2 A B 236 91.056 126.083 -9.031 1.00 59.33 O
ATOM 27 O5' A B 236 89.989 124.052 -10.032 1.00 57.95 O
TER
Atoms:
OP1: (94.560,112.836,-10.901)
OP2: (95.071,111.498,-8.766)
C3': (94.350,116.540,-7.906)
C1': (93.877,115.694,-5.750)
C5': (92.924,114.660,-8.848)
O6: (94.695,112.136,-0.999)
O4': (92.757,115.389,-6.555)
C8: (94.613,113.342,-5.114)
C2: (93.297,115.369,-1.472)
C6: (94.300,113.133,-1.609)
C5: (94.336,113.390,-3.006)
C4: (93.882,114.607,-3.468)
P: (94.212,112.466,-9.499)
C4': (92.997,115.840,-7.918)
C2': (95.047,115.904,-6.709)
O2': (96.055,116.708,-6.134)
N1: (93.745,114.200,-0.908)
N2: (92.768,116.270,-0.631)
N3: (93.355,115.633,-2.766)
N7: (94.780,112.597,-4.056)
N9: (94.100,114.586,-4.823)
O5': (94.062,113.800,-8.648)
O3': (94.178,117.939,-7.747)
OP2: (95.071,111.498,-8.766)
C3': (94.350,116.540,-7.906)
C1': (93.877,115.694,-5.750)
C5': (92.924,114.660,-8.848)
O6: (94.695,112.136,-0.999)
O4': (92.757,115.389,-6.555)
C8: (94.613,113.342,-5.114)
C2: (93.297,115.369,-1.472)
C6: (94.300,113.133,-1.609)
C5: (94.336,113.390,-3.006)
C4: (93.882,114.607,-3.468)
P: (94.212,112.466,-9.499)
C4': (92.997,115.840,-7.918)
C2': (95.047,115.904,-6.709)
O2': (96.055,116.708,-6.134)
N1: (93.745,114.200,-0.908)
N2: (92.768,116.270,-0.631)
N3: (93.355,115.633,-2.766)
N7: (94.780,112.597,-4.056)
N9: (94.100,114.586,-4.823)
O5': (94.062,113.800,-8.648)
O3': (94.178,117.939,-7.747)
OP1: (94.489,118.372,-10.190)
OP2: (96.190,119.225,-8.473)
C3': (92.642,122.766,-8.330)
C1': (92.498,122.105,-6.087)
C5': (92.527,120.301,-8.982)
O4': (91.794,121.130,-6.829)
C8: (93.864,120.320,-4.870)
O2': (93.916,123.998,-6.631)
C6: (93.772,121.245,-1.486)
C5: (93.715,121.004,-2.864)
C4: (92.999,121.904,-3.628)
P: (94.784,118.936,-8.852)
C4': (91.877,121.448,-8.247)
C2': (93.491,122.725,-7.067)
C2: (92.468,123.111,-1.875)
N1: (93.122,122.328,-1.014)
N3: (92.343,122.992,-3.189)
N6: (94.432,120.470,-0.625)
N7: (94.259,120.005,-3.661)
N9: (93.100,121.460,-4.923)
O5': (93.932,120.265,-8.673)
O3': (91.721,123.834,-8.215)
OP2: (96.190,119.225,-8.473)
C3': (92.642,122.766,-8.330)
C1': (92.498,122.105,-6.087)
C5': (92.527,120.301,-8.982)
O4': (91.794,121.130,-6.829)
C8: (93.864,120.320,-4.870)
O2': (93.916,123.998,-6.631)
C6: (93.772,121.245,-1.486)
C5: (93.715,121.004,-2.864)
C4: (92.999,121.904,-3.628)
P: (94.784,118.936,-8.852)
C4': (91.877,121.448,-8.247)
C2': (93.491,122.725,-7.067)
C2: (92.468,123.111,-1.875)
N1: (93.122,122.328,-1.014)
N3: (92.343,122.992,-3.189)
N6: (94.432,120.470,-0.625)
N7: (94.259,120.005,-3.661)
N9: (93.100,121.460,-4.923)
O5': (93.932,120.265,-8.673)
O3': (91.721,123.834,-8.215)
Image (generated by PyMOL):