Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD3:A36:A5
Extra
PDB:
ATOM 1 O3' G A 35 7.344 -29.410 22.749 1.00 30.33 O
ATOM 2 P G A 36 5.766 -29.660 22.936 1.00 43.12 P
ATOM 3 OP1 G A 36 5.155 -29.620 21.584 1.00 40.83 O
ATOM 4 OP2 G A 36 5.291 -28.696 23.965 1.00 46.36 O
ATOM 5 O5' G A 36 5.698 -31.142 23.514 1.00 34.52 O
ATOM 6 C5' G A 36 4.445 -31.784 23.713 1.00 36.96 C
ATOM 7 C4' G A 36 4.588 -33.053 24.517 1.00 36.98 C
ATOM 8 O4' G A 36 5.606 -33.900 23.925 1.00 36.82 O
ATOM 9 C3' G A 36 5.040 -32.883 25.957 1.00 38.58 C
ATOM 10 O3' G A 36 3.981 -32.523 26.824 1.00 42.40 O
ATOM 11 C2' G A 36 5.648 -34.241 26.276 1.00 39.96 C
ATOM 12 O2' G A 36 4.629 -35.188 26.562 1.00 43.61 O
ATOM 13 C1' G A 36 6.287 -34.610 24.938 1.00 35.84 C
ATOM 14 N9 G A 36 7.716 -34.248 24.885 1.00 33.37 N
ATOM 15 C8 G A 36 8.319 -33.429 23.963 1.00 33.82 C
ATOM 16 N7 G A 36 9.602 -33.295 24.159 1.00 34.47 N
ATOM 17 C5 G A 36 9.871 -34.079 25.274 1.00 33.11 C
ATOM 18 C6 G A 36 11.096 -34.326 25.952 1.00 32.29 C
ATOM 19 O6 G A 36 12.230 -33.892 25.697 1.00 31.90 O
ATOM 20 N1 G A 36 10.911 -35.178 27.036 1.00 29.71 N
ATOM 21 C2 G A 36 9.711 -35.725 27.415 1.00 32.81 C
ATOM 22 N2 G A 36 9.745 -36.529 28.489 1.00 35.85 N
ATOM 23 N3 G A 36 8.564 -35.506 26.791 1.00 34.25 N
ATOM 24 C4 G A 36 8.715 -34.678 25.733 1.00 34.41 C
ATOM 25 P G A 37 4.268 -31.624 28.123 1.00 42.86 P
ATOM 26 OP1 G A 37 2.950 -31.284 28.711 1.00 46.00 O
ATOM 27 OP2 G A 37 5.169 -30.522 27.704 1.00 40.86 O
ATOM 28 O5' G A 37 5.050 -32.627 29.083 1.00 45.60 O
TER
ATOM 1 O3' A B 4 11.609 -30.651 13.821 1.00 37.35 O
ATOM 2 P G B 5 11.749 -29.072 14.094 1.00 39.28 P
ATOM 3 OP1 G B 5 11.006 -28.375 13.015 1.00 38.00 O
ATOM 4 OP2 G B 5 13.193 -28.781 14.267 1.00 42.19 O
ATOM 5 O5' G B 5 10.992 -28.884 15.478 1.00 41.15 O
ATOM 6 C5' G B 5 9.612 -29.191 15.603 1.00 39.10 C
ATOM 7 C4' G B 5 9.233 -29.415 17.043 1.00 38.63 C
ATOM 8 O4' G B 5 9.933 -30.579 17.556 1.00 39.02 O
ATOM 9 C3' G B 5 9.607 -28.297 18.008 1.00 33.85 C
ATOM 10 O3' G B 5 8.664 -27.239 18.013 1.00 33.73 O
ATOM 11 C2' G B 5 9.711 -29.024 19.341 1.00 36.98 C
ATOM 12 O2' G B 5 8.421 -29.233 19.897 1.00 33.83 O
ATOM 13 C1' G B 5 10.279 -30.377 18.909 1.00 39.10 C
ATOM 14 N9 G B 5 11.752 -30.430 19.033 1.00 40.67 N
ATOM 15 C8 G B 5 12.691 -29.999 18.126 1.00 41.56 C
ATOM 16 N7 G B 5 13.922 -30.182 18.525 1.00 40.96 N
ATOM 17 C5 G B 5 13.792 -30.773 19.775 1.00 41.15 C
ATOM 18 C6 G B 5 14.777 -31.207 20.704 1.00 39.01 C
ATOM 19 O6 G B 5 16.010 -31.158 20.611 1.00 36.55 O
ATOM 20 N1 G B 5 14.196 -31.745 21.848 1.00 37.26 N
ATOM 21 C2 G B 5 12.847 -31.859 22.073 1.00 38.14 C
ATOM 22 N2 G B 5 12.480 -32.408 23.239 1.00 38.60 N
ATOM 23 N3 G B 5 11.923 -31.461 21.217 1.00 38.62 N
ATOM 24 C4 G B 5 12.460 -30.932 20.100 1.00 40.82 C
ATOM 25 P U B 6 9.147 -25.717 18.220 1.00 38.88 P
ATOM 26 OP1 U B 6 8.106 -24.847 17.626 1.00 38.83 O
ATOM 27 OP2 U B 6 10.531 -25.623 17.702 1.00 33.83 O
ATOM 28 O5' U B 6 9.146 -25.553 19.808 1.00 36.63 O
TER
ATOM 2 P G A 36 5.766 -29.660 22.936 1.00 43.12 P
ATOM 3 OP1 G A 36 5.155 -29.620 21.584 1.00 40.83 O
ATOM 4 OP2 G A 36 5.291 -28.696 23.965 1.00 46.36 O
ATOM 5 O5' G A 36 5.698 -31.142 23.514 1.00 34.52 O
ATOM 6 C5' G A 36 4.445 -31.784 23.713 1.00 36.96 C
ATOM 7 C4' G A 36 4.588 -33.053 24.517 1.00 36.98 C
ATOM 8 O4' G A 36 5.606 -33.900 23.925 1.00 36.82 O
ATOM 9 C3' G A 36 5.040 -32.883 25.957 1.00 38.58 C
ATOM 10 O3' G A 36 3.981 -32.523 26.824 1.00 42.40 O
ATOM 11 C2' G A 36 5.648 -34.241 26.276 1.00 39.96 C
ATOM 12 O2' G A 36 4.629 -35.188 26.562 1.00 43.61 O
ATOM 13 C1' G A 36 6.287 -34.610 24.938 1.00 35.84 C
ATOM 14 N9 G A 36 7.716 -34.248 24.885 1.00 33.37 N
ATOM 15 C8 G A 36 8.319 -33.429 23.963 1.00 33.82 C
ATOM 16 N7 G A 36 9.602 -33.295 24.159 1.00 34.47 N
ATOM 17 C5 G A 36 9.871 -34.079 25.274 1.00 33.11 C
ATOM 18 C6 G A 36 11.096 -34.326 25.952 1.00 32.29 C
ATOM 19 O6 G A 36 12.230 -33.892 25.697 1.00 31.90 O
ATOM 20 N1 G A 36 10.911 -35.178 27.036 1.00 29.71 N
ATOM 21 C2 G A 36 9.711 -35.725 27.415 1.00 32.81 C
ATOM 22 N2 G A 36 9.745 -36.529 28.489 1.00 35.85 N
ATOM 23 N3 G A 36 8.564 -35.506 26.791 1.00 34.25 N
ATOM 24 C4 G A 36 8.715 -34.678 25.733 1.00 34.41 C
ATOM 25 P G A 37 4.268 -31.624 28.123 1.00 42.86 P
ATOM 26 OP1 G A 37 2.950 -31.284 28.711 1.00 46.00 O
ATOM 27 OP2 G A 37 5.169 -30.522 27.704 1.00 40.86 O
ATOM 28 O5' G A 37 5.050 -32.627 29.083 1.00 45.60 O
TER
ATOM 1 O3' A B 4 11.609 -30.651 13.821 1.00 37.35 O
ATOM 2 P G B 5 11.749 -29.072 14.094 1.00 39.28 P
ATOM 3 OP1 G B 5 11.006 -28.375 13.015 1.00 38.00 O
ATOM 4 OP2 G B 5 13.193 -28.781 14.267 1.00 42.19 O
ATOM 5 O5' G B 5 10.992 -28.884 15.478 1.00 41.15 O
ATOM 6 C5' G B 5 9.612 -29.191 15.603 1.00 39.10 C
ATOM 7 C4' G B 5 9.233 -29.415 17.043 1.00 38.63 C
ATOM 8 O4' G B 5 9.933 -30.579 17.556 1.00 39.02 O
ATOM 9 C3' G B 5 9.607 -28.297 18.008 1.00 33.85 C
ATOM 10 O3' G B 5 8.664 -27.239 18.013 1.00 33.73 O
ATOM 11 C2' G B 5 9.711 -29.024 19.341 1.00 36.98 C
ATOM 12 O2' G B 5 8.421 -29.233 19.897 1.00 33.83 O
ATOM 13 C1' G B 5 10.279 -30.377 18.909 1.00 39.10 C
ATOM 14 N9 G B 5 11.752 -30.430 19.033 1.00 40.67 N
ATOM 15 C8 G B 5 12.691 -29.999 18.126 1.00 41.56 C
ATOM 16 N7 G B 5 13.922 -30.182 18.525 1.00 40.96 N
ATOM 17 C5 G B 5 13.792 -30.773 19.775 1.00 41.15 C
ATOM 18 C6 G B 5 14.777 -31.207 20.704 1.00 39.01 C
ATOM 19 O6 G B 5 16.010 -31.158 20.611 1.00 36.55 O
ATOM 20 N1 G B 5 14.196 -31.745 21.848 1.00 37.26 N
ATOM 21 C2 G B 5 12.847 -31.859 22.073 1.00 38.14 C
ATOM 22 N2 G B 5 12.480 -32.408 23.239 1.00 38.60 N
ATOM 23 N3 G B 5 11.923 -31.461 21.217 1.00 38.62 N
ATOM 24 C4 G B 5 12.460 -30.932 20.100 1.00 40.82 C
ATOM 25 P U B 6 9.147 -25.717 18.220 1.00 38.88 P
ATOM 26 OP1 U B 6 8.106 -24.847 17.626 1.00 38.83 O
ATOM 27 OP2 U B 6 10.531 -25.623 17.702 1.00 33.83 O
ATOM 28 O5' U B 6 9.146 -25.553 19.808 1.00 36.63 O
TER
Atoms:
OP1: (5.155,-29.620,21.584)
OP2: (5.291,-28.696,23.965)
C3': (5.040,-32.883,25.957)
C1': (6.287,-34.610,24.938)
C5': (4.445,-31.784,23.713)
O6: (12.230,-33.892,25.697)
O4': (5.606,-33.900,23.925)
C8: (8.319,-33.429,23.963)
C2: (9.711,-35.725,27.415)
C6: (11.096,-34.326,25.952)
C5: (9.871,-34.079,25.274)
C4: (8.715,-34.678,25.733)
P: (5.766,-29.660,22.936)
C4': (4.588,-33.053,24.517)
C2': (5.648,-34.241,26.276)
O2': (4.629,-35.188,26.562)
N1: (10.911,-35.178,27.036)
N2: (9.745,-36.529,28.489)
N3: (8.564,-35.506,26.791)
N7: (9.602,-33.295,24.159)
N9: (7.716,-34.248,24.885)
O5': (5.698,-31.142,23.514)
O3': (3.981,-32.523,26.824)
OP2: (5.291,-28.696,23.965)
C3': (5.040,-32.883,25.957)
C1': (6.287,-34.610,24.938)
C5': (4.445,-31.784,23.713)
O6: (12.230,-33.892,25.697)
O4': (5.606,-33.900,23.925)
C8: (8.319,-33.429,23.963)
C2: (9.711,-35.725,27.415)
C6: (11.096,-34.326,25.952)
C5: (9.871,-34.079,25.274)
C4: (8.715,-34.678,25.733)
P: (5.766,-29.660,22.936)
C4': (4.588,-33.053,24.517)
C2': (5.648,-34.241,26.276)
O2': (4.629,-35.188,26.562)
N1: (10.911,-35.178,27.036)
N2: (9.745,-36.529,28.489)
N3: (8.564,-35.506,26.791)
N7: (9.602,-33.295,24.159)
N9: (7.716,-34.248,24.885)
O5': (5.698,-31.142,23.514)
O3': (3.981,-32.523,26.824)
OP1: (11.006,-28.375,13.015)
OP2: (13.193,-28.781,14.267)
C3': (9.607,-28.297,18.008)
C1': (10.279,-30.377,18.909)
C5': (9.612,-29.191,15.603)
O6: (16.010,-31.158,20.611)
O4': (9.933,-30.579,17.556)
C8: (12.691,-29.999,18.126)
C2: (12.847,-31.859,22.073)
C6: (14.777,-31.207,20.704)
C5: (13.792,-30.773,19.775)
C4: (12.460,-30.932,20.100)
P: (11.749,-29.072,14.094)
C4': (9.233,-29.415,17.043)
C2': (9.711,-29.024,19.341)
O2': (8.421,-29.233,19.897)
N1: (14.196,-31.745,21.848)
N2: (12.480,-32.408,23.239)
N3: (11.923,-31.461,21.217)
N7: (13.922,-30.182,18.525)
N9: (11.752,-30.430,19.033)
O5': (10.992,-28.884,15.478)
O3': (8.664,-27.239,18.013)
OP2: (13.193,-28.781,14.267)
C3': (9.607,-28.297,18.008)
C1': (10.279,-30.377,18.909)
C5': (9.612,-29.191,15.603)
O6: (16.010,-31.158,20.611)
O4': (9.933,-30.579,17.556)
C8: (12.691,-29.999,18.126)
C2: (12.847,-31.859,22.073)
C6: (14.777,-31.207,20.704)
C5: (13.792,-30.773,19.775)
C4: (12.460,-30.932,20.100)
P: (11.749,-29.072,14.094)
C4': (9.233,-29.415,17.043)
C2': (9.711,-29.024,19.341)
O2': (8.421,-29.233,19.897)
N1: (14.196,-31.745,21.848)
N2: (12.480,-32.408,23.239)
N3: (11.923,-31.461,21.217)
N7: (13.922,-30.182,18.525)
N9: (11.752,-30.430,19.033)
O5': (10.992,-28.884,15.478)
O3': (8.664,-27.239,18.013)
Image (generated by PyMOL):