Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0234:0235
Extra
PDB:
ATOM 1 O3' C A 233 93.068 112.186 -9.358 1.00 75.19 O
ATOM 2 P G A 234 94.558 112.781 -9.401 1.00 78.09 P
ATOM 3 OP1 G A 234 94.868 113.181 -10.803 1.00 78.50 O
ATOM 4 OP2 G A 234 95.436 111.799 -8.707 1.00 76.79 O
ATOM 5 O5' G A 234 94.434 114.099 -8.519 1.00 77.03 O
ATOM 6 C5' G A 234 93.312 114.988 -8.696 1.00 76.70 C
ATOM 7 C4' G A 234 93.410 116.150 -7.744 1.00 77.13 C
ATOM 8 O4' G A 234 93.128 115.698 -6.390 1.00 77.44 O
ATOM 9 C3' G A 234 94.788 116.793 -7.704 1.00 77.66 C
ATOM 10 O3' G A 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 11 C2' G A 234 95.437 116.108 -6.507 1.00 78.03 C
ATOM 12 O2' G A 234 96.477 116.861 -5.917 1.00 78.92 O
ATOM 13 C1' G A 234 94.246 115.948 -5.564 1.00 78.17 C
ATOM 14 N9 G A 234 94.397 114.828 -4.637 1.00 79.15 N
ATOM 15 C8 G A 234 94.797 113.547 -4.940 1.00 79.66 C
ATOM 16 N7 G A 234 94.888 112.776 -3.891 1.00 80.10 N
ATOM 17 C5 G A 234 94.517 113.593 -2.830 1.00 81.02 C
ATOM 18 C6 G A 234 94.430 113.312 -1.440 1.00 81.98 C
ATOM 19 O6 G A 234 94.678 112.252 -0.850 1.00 83.18 O
ATOM 20 N1 G A 234 94.000 114.423 -0.720 1.00 81.94 N
ATOM 21 C2 G A 234 93.687 115.644 -1.263 1.00 81.44 C
ATOM 22 N2 G A 234 93.265 116.584 -0.402 1.00 81.83 N
ATOM 23 N3 G A 234 93.775 115.922 -2.555 1.00 80.97 N
ATOM 24 C4 G A 234 94.194 114.858 -3.275 1.00 80.22 C
ATOM 25 P A A 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 26 OP1 A A 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 27 OP2 A A 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 28 O5' A A 235 94.427 120.509 -8.491 1.00 74.14 O
TER
ATOM 1 O3' G B 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 2 P A B 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 3 OP1 A B 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 4 OP2 A B 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 5 O5' A B 235 94.427 120.509 -8.491 1.00 74.14 O
ATOM 6 C5' A B 235 93.024 120.496 -8.823 1.00 71.01 C
ATOM 7 C4' A B 235 92.320 121.625 -8.108 1.00 71.59 C
ATOM 8 O4' A B 235 92.241 121.328 -6.683 1.00 70.65 O
ATOM 9 C3' A B 235 93.011 122.984 -8.206 1.00 71.76 C
ATOM 10 O3' A B 235 92.029 124.005 -8.113 1.00 73.58 O
ATOM 11 C2' A B 235 93.841 123.013 -6.929 1.00 71.04 C
ATOM 12 O2' A B 235 94.214 124.312 -6.521 1.00 69.48 O
ATOM 13 C1' A B 235 92.857 122.371 -5.954 1.00 70.53 C
ATOM 14 N9 A B 235 93.439 121.815 -4.734 1.00 70.12 N
ATOM 15 C8 A B 235 94.196 120.677 -4.579 1.00 70.78 C
ATOM 16 N7 A B 235 94.557 120.448 -3.340 1.00 70.26 N
ATOM 17 C5 A B 235 94.003 121.506 -2.632 1.00 69.45 C
ATOM 18 C6 A B 235 94.024 121.843 -1.272 1.00 68.83 C
ATOM 19 N6 A B 235 94.655 121.124 -0.342 1.00 67.87 N
ATOM 20 N1 A B 235 93.370 122.962 -0.893 1.00 69.67 N
ATOM 21 C2 A B 235 92.745 123.690 -1.830 1.00 70.34 C
ATOM 22 N3 A B 235 92.658 123.479 -3.139 1.00 69.84 N
ATOM 23 C4 A B 235 93.315 122.356 -3.479 1.00 69.71 C
ATOM 24 P A B 236 91.721 124.940 -9.377 1.00 76.22 P
ATOM 25 OP1 A B 236 92.783 124.705 -10.401 1.00 74.64 O
ATOM 26 OP2 A B 236 91.500 126.312 -8.841 1.00 75.75 O
ATOM 27 O5' A B 236 90.324 124.399 -9.936 1.00 74.84 O
TER
ATOM 2 P G A 234 94.558 112.781 -9.401 1.00 78.09 P
ATOM 3 OP1 G A 234 94.868 113.181 -10.803 1.00 78.50 O
ATOM 4 OP2 G A 234 95.436 111.799 -8.707 1.00 76.79 O
ATOM 5 O5' G A 234 94.434 114.099 -8.519 1.00 77.03 O
ATOM 6 C5' G A 234 93.312 114.988 -8.696 1.00 76.70 C
ATOM 7 C4' G A 234 93.410 116.150 -7.744 1.00 77.13 C
ATOM 8 O4' G A 234 93.128 115.698 -6.390 1.00 77.44 O
ATOM 9 C3' G A 234 94.788 116.793 -7.704 1.00 77.66 C
ATOM 10 O3' G A 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 11 C2' G A 234 95.437 116.108 -6.507 1.00 78.03 C
ATOM 12 O2' G A 234 96.477 116.861 -5.917 1.00 78.92 O
ATOM 13 C1' G A 234 94.246 115.948 -5.564 1.00 78.17 C
ATOM 14 N9 G A 234 94.397 114.828 -4.637 1.00 79.15 N
ATOM 15 C8 G A 234 94.797 113.547 -4.940 1.00 79.66 C
ATOM 16 N7 G A 234 94.888 112.776 -3.891 1.00 80.10 N
ATOM 17 C5 G A 234 94.517 113.593 -2.830 1.00 81.02 C
ATOM 18 C6 G A 234 94.430 113.312 -1.440 1.00 81.98 C
ATOM 19 O6 G A 234 94.678 112.252 -0.850 1.00 83.18 O
ATOM 20 N1 G A 234 94.000 114.423 -0.720 1.00 81.94 N
ATOM 21 C2 G A 234 93.687 115.644 -1.263 1.00 81.44 C
ATOM 22 N2 G A 234 93.265 116.584 -0.402 1.00 81.83 N
ATOM 23 N3 G A 234 93.775 115.922 -2.555 1.00 80.97 N
ATOM 24 C4 G A 234 94.194 114.858 -3.275 1.00 80.22 C
ATOM 25 P A A 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 26 OP1 A A 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 27 OP2 A A 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 28 O5' A A 235 94.427 120.509 -8.491 1.00 74.14 O
TER
ATOM 1 O3' G B 234 94.670 118.196 -7.522 1.00 77.40 O
ATOM 2 P A B 235 95.318 119.194 -8.607 1.00 76.83 P
ATOM 3 OP1 A B 235 95.107 118.614 -9.961 1.00 77.34 O
ATOM 4 OP2 A B 235 96.704 119.512 -8.154 1.00 76.01 O
ATOM 5 O5' A B 235 94.427 120.509 -8.491 1.00 74.14 O
ATOM 6 C5' A B 235 93.024 120.496 -8.823 1.00 71.01 C
ATOM 7 C4' A B 235 92.320 121.625 -8.108 1.00 71.59 C
ATOM 8 O4' A B 235 92.241 121.328 -6.683 1.00 70.65 O
ATOM 9 C3' A B 235 93.011 122.984 -8.206 1.00 71.76 C
ATOM 10 O3' A B 235 92.029 124.005 -8.113 1.00 73.58 O
ATOM 11 C2' A B 235 93.841 123.013 -6.929 1.00 71.04 C
ATOM 12 O2' A B 235 94.214 124.312 -6.521 1.00 69.48 O
ATOM 13 C1' A B 235 92.857 122.371 -5.954 1.00 70.53 C
ATOM 14 N9 A B 235 93.439 121.815 -4.734 1.00 70.12 N
ATOM 15 C8 A B 235 94.196 120.677 -4.579 1.00 70.78 C
ATOM 16 N7 A B 235 94.557 120.448 -3.340 1.00 70.26 N
ATOM 17 C5 A B 235 94.003 121.506 -2.632 1.00 69.45 C
ATOM 18 C6 A B 235 94.024 121.843 -1.272 1.00 68.83 C
ATOM 19 N6 A B 235 94.655 121.124 -0.342 1.00 67.87 N
ATOM 20 N1 A B 235 93.370 122.962 -0.893 1.00 69.67 N
ATOM 21 C2 A B 235 92.745 123.690 -1.830 1.00 70.34 C
ATOM 22 N3 A B 235 92.658 123.479 -3.139 1.00 69.84 N
ATOM 23 C4 A B 235 93.315 122.356 -3.479 1.00 69.71 C
ATOM 24 P A B 236 91.721 124.940 -9.377 1.00 76.22 P
ATOM 25 OP1 A B 236 92.783 124.705 -10.401 1.00 74.64 O
ATOM 26 OP2 A B 236 91.500 126.312 -8.841 1.00 75.75 O
ATOM 27 O5' A B 236 90.324 124.399 -9.936 1.00 74.84 O
TER
Atoms:
OP1: (94.868,113.181,-10.803)
OP2: (95.436,111.799,-8.707)
C3': (94.788,116.793,-7.704)
C1': (94.246,115.948,-5.564)
C5': (93.312,114.988,-8.696)
O6: (94.678,112.252,-0.850)
O4': (93.128,115.698,-6.390)
C8: (94.797,113.547,-4.940)
C2: (93.687,115.644,-1.263)
C6: (94.430,113.312,-1.440)
C5: (94.517,113.593,-2.830)
C4: (94.194,114.858,-3.275)
P: (94.558,112.781,-9.401)
C4': (93.410,116.150,-7.744)
C2': (95.437,116.108,-6.507)
O2': (96.477,116.861,-5.917)
N1: (94.000,114.423,-0.720)
N2: (93.265,116.584,-0.402)
N3: (93.775,115.922,-2.555)
N7: (94.888,112.776,-3.891)
N9: (94.397,114.828,-4.637)
O5': (94.434,114.099,-8.519)
O3': (94.670,118.196,-7.522)
OP2: (95.436,111.799,-8.707)
C3': (94.788,116.793,-7.704)
C1': (94.246,115.948,-5.564)
C5': (93.312,114.988,-8.696)
O6: (94.678,112.252,-0.850)
O4': (93.128,115.698,-6.390)
C8: (94.797,113.547,-4.940)
C2: (93.687,115.644,-1.263)
C6: (94.430,113.312,-1.440)
C5: (94.517,113.593,-2.830)
C4: (94.194,114.858,-3.275)
P: (94.558,112.781,-9.401)
C4': (93.410,116.150,-7.744)
C2': (95.437,116.108,-6.507)
O2': (96.477,116.861,-5.917)
N1: (94.000,114.423,-0.720)
N2: (93.265,116.584,-0.402)
N3: (93.775,115.922,-2.555)
N7: (94.888,112.776,-3.891)
N9: (94.397,114.828,-4.637)
O5': (94.434,114.099,-8.519)
O3': (94.670,118.196,-7.522)
OP1: (95.107,118.614,-9.961)
OP2: (96.704,119.512,-8.154)
C3': (93.011,122.984,-8.206)
C1': (92.857,122.371,-5.954)
C5': (93.024,120.496,-8.823)
O4': (92.241,121.328,-6.683)
C8: (94.196,120.677,-4.579)
O2': (94.214,124.312,-6.521)
C6: (94.024,121.843,-1.272)
C5: (94.003,121.506,-2.632)
C4: (93.315,122.356,-3.479)
P: (95.318,119.194,-8.607)
C4': (92.320,121.625,-8.108)
C2': (93.841,123.013,-6.929)
C2: (92.745,123.690,-1.830)
N1: (93.370,122.962,-0.893)
N3: (92.658,123.479,-3.139)
N6: (94.655,121.124,-0.342)
N7: (94.557,120.448,-3.340)
N9: (93.439,121.815,-4.734)
O5': (94.427,120.509,-8.491)
O3': (92.029,124.005,-8.113)
OP2: (96.704,119.512,-8.154)
C3': (93.011,122.984,-8.206)
C1': (92.857,122.371,-5.954)
C5': (93.024,120.496,-8.823)
O4': (92.241,121.328,-6.683)
C8: (94.196,120.677,-4.579)
O2': (94.214,124.312,-6.521)
C6: (94.024,121.843,-1.272)
C5: (94.003,121.506,-2.632)
C4: (93.315,122.356,-3.479)
P: (95.318,119.194,-8.607)
C4': (92.320,121.625,-8.108)
C2': (93.841,123.013,-6.929)
C2: (92.745,123.690,-1.830)
N1: (93.370,122.962,-0.893)
N3: (92.658,123.479,-3.139)
N6: (94.655,121.124,-0.342)
N7: (94.557,120.448,-3.340)
N9: (93.439,121.815,-4.734)
O5': (94.427,120.509,-8.491)
O3': (92.029,124.005,-8.113)
Image (generated by PyMOL):