Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0234:0235
Extra
PDB:
ATOM 1 O3' C A 233 92.698 112.039 -9.578 1.00 66.21 O
ATOM 2 P G A 234 94.194 112.618 -9.593 1.00 69.47 P
ATOM 3 OP1 G A 234 94.531 113.001 -10.992 1.00 69.93 O
ATOM 4 OP2 G A 234 95.059 111.642 -8.868 1.00 68.00 O
ATOM 5 O5' G A 234 94.064 113.939 -8.719 1.00 67.08 O
ATOM 6 C5' G A 234 92.936 114.811 -8.898 1.00 66.86 C
ATOM 7 C4' G A 234 93.032 115.982 -7.964 1.00 67.10 C
ATOM 8 O4' G A 234 92.784 115.530 -6.606 1.00 67.46 O
ATOM 9 C3' G A 234 94.392 116.665 -7.950 1.00 66.72 C
ATOM 10 O3' G A 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 11 C2' G A 234 95.075 116.028 -6.747 1.00 66.48 C
ATOM 12 O2' G A 234 96.082 116.844 -6.181 1.00 65.85 O
ATOM 13 C1' G A 234 93.896 115.832 -5.794 1.00 67.40 C
ATOM 14 N9 G A 234 94.089 114.728 -4.858 1.00 68.80 N
ATOM 15 C8 G A 234 94.570 113.471 -5.147 1.00 69.31 C
ATOM 16 N7 G A 234 94.701 112.716 -4.090 1.00 70.15 N
ATOM 17 C5 G A 234 94.267 113.517 -3.040 1.00 71.48 C
ATOM 18 C6 G A 234 94.196 113.248 -1.643 1.00 72.20 C
ATOM 19 O6 G A 234 94.531 112.223 -1.035 1.00 72.95 O
ATOM 20 N1 G A 234 93.677 114.331 -0.938 1.00 71.92 N
ATOM 21 C2 G A 234 93.280 115.520 -1.497 1.00 71.50 C
ATOM 22 N2 G A 234 92.788 116.433 -0.644 1.00 71.14 N
ATOM 23 N3 G A 234 93.358 115.792 -2.794 1.00 71.14 N
ATOM 24 C4 G A 234 93.859 114.753 -3.501 1.00 70.36 C
ATOM 25 P A A 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 26 OP1 A A 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 27 OP2 A A 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 28 O5' A A 235 93.930 120.402 -8.651 1.00 64.19 O
TER
ATOM 1 O3' G B 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 2 P A B 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 3 OP1 A B 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 4 OP2 A B 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 5 O5' A B 235 93.930 120.402 -8.651 1.00 64.19 O
ATOM 6 C5' A B 235 92.533 120.520 -8.988 1.00 63.56 C
ATOM 7 C4' A B 235 91.924 121.694 -8.266 1.00 63.92 C
ATOM 8 O4' A B 235 91.811 121.393 -6.848 1.00 63.93 O
ATOM 9 C3' A B 235 92.720 122.991 -8.353 1.00 63.52 C
ATOM 10 O3' A B 235 91.816 124.078 -8.263 1.00 63.91 O
ATOM 11 C2' A B 235 93.551 122.949 -7.080 1.00 64.05 C
ATOM 12 O2' A B 235 93.994 124.225 -6.659 1.00 62.53 O
ATOM 13 C1' A B 235 92.537 122.352 -6.105 1.00 64.72 C
ATOM 14 N9 A B 235 93.114 121.688 -4.939 1.00 66.33 N
ATOM 15 C8 A B 235 93.877 120.545 -4.887 1.00 66.96 C
ATOM 16 N7 A B 235 94.224 120.198 -3.673 1.00 67.32 N
ATOM 17 C5 A B 235 93.655 121.179 -2.872 1.00 66.60 C
ATOM 18 C6 A B 235 93.654 121.380 -1.489 1.00 66.08 C
ATOM 19 N6 A B 235 94.254 120.567 -0.621 1.00 65.94 N
ATOM 20 N1 A B 235 93.001 122.459 -1.015 1.00 66.80 N
ATOM 21 C2 A B 235 92.391 123.273 -1.881 1.00 66.71 C
ATOM 22 N3 A B 235 92.314 123.186 -3.199 1.00 66.51 N
ATOM 23 C4 A B 235 92.976 122.104 -3.639 1.00 66.42 C
ATOM 24 P A B 236 91.326 124.808 -9.595 1.00 64.10 P
ATOM 25 OP1 A B 236 92.402 124.584 -10.598 1.00 64.06 O
ATOM 26 OP2 A B 236 90.915 126.196 -9.238 1.00 63.39 O
ATOM 27 O5' A B 236 90.028 123.997 -10.038 1.00 63.06 O
TER
ATOM 2 P G A 234 94.194 112.618 -9.593 1.00 69.47 P
ATOM 3 OP1 G A 234 94.531 113.001 -10.992 1.00 69.93 O
ATOM 4 OP2 G A 234 95.059 111.642 -8.868 1.00 68.00 O
ATOM 5 O5' G A 234 94.064 113.939 -8.719 1.00 67.08 O
ATOM 6 C5' G A 234 92.936 114.811 -8.898 1.00 66.86 C
ATOM 7 C4' G A 234 93.032 115.982 -7.964 1.00 67.10 C
ATOM 8 O4' G A 234 92.784 115.530 -6.606 1.00 67.46 O
ATOM 9 C3' G A 234 94.392 116.665 -7.950 1.00 66.72 C
ATOM 10 O3' G A 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 11 C2' G A 234 95.075 116.028 -6.747 1.00 66.48 C
ATOM 12 O2' G A 234 96.082 116.844 -6.181 1.00 65.85 O
ATOM 13 C1' G A 234 93.896 115.832 -5.794 1.00 67.40 C
ATOM 14 N9 G A 234 94.089 114.728 -4.858 1.00 68.80 N
ATOM 15 C8 G A 234 94.570 113.471 -5.147 1.00 69.31 C
ATOM 16 N7 G A 234 94.701 112.716 -4.090 1.00 70.15 N
ATOM 17 C5 G A 234 94.267 113.517 -3.040 1.00 71.48 C
ATOM 18 C6 G A 234 94.196 113.248 -1.643 1.00 72.20 C
ATOM 19 O6 G A 234 94.531 112.223 -1.035 1.00 72.95 O
ATOM 20 N1 G A 234 93.677 114.331 -0.938 1.00 71.92 N
ATOM 21 C2 G A 234 93.280 115.520 -1.497 1.00 71.50 C
ATOM 22 N2 G A 234 92.788 116.433 -0.644 1.00 71.14 N
ATOM 23 N3 G A 234 93.358 115.792 -2.794 1.00 71.14 N
ATOM 24 C4 G A 234 93.859 114.753 -3.501 1.00 70.36 C
ATOM 25 P A A 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 26 OP1 A A 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 27 OP2 A A 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 28 O5' A A 235 93.930 120.402 -8.651 1.00 64.19 O
TER
ATOM 1 O3' G B 234 94.228 118.064 -7.786 1.00 66.23 O
ATOM 2 P A B 235 94.725 119.056 -8.947 1.00 65.33 P
ATOM 3 OP1 A B 235 94.225 118.524 -10.242 1.00 65.43 O
ATOM 4 OP2 A B 235 96.187 119.272 -8.757 1.00 63.53 O
ATOM 5 O5' A B 235 93.930 120.402 -8.651 1.00 64.19 O
ATOM 6 C5' A B 235 92.533 120.520 -8.988 1.00 63.56 C
ATOM 7 C4' A B 235 91.924 121.694 -8.266 1.00 63.92 C
ATOM 8 O4' A B 235 91.811 121.393 -6.848 1.00 63.93 O
ATOM 9 C3' A B 235 92.720 122.991 -8.353 1.00 63.52 C
ATOM 10 O3' A B 235 91.816 124.078 -8.263 1.00 63.91 O
ATOM 11 C2' A B 235 93.551 122.949 -7.080 1.00 64.05 C
ATOM 12 O2' A B 235 93.994 124.225 -6.659 1.00 62.53 O
ATOM 13 C1' A B 235 92.537 122.352 -6.105 1.00 64.72 C
ATOM 14 N9 A B 235 93.114 121.688 -4.939 1.00 66.33 N
ATOM 15 C8 A B 235 93.877 120.545 -4.887 1.00 66.96 C
ATOM 16 N7 A B 235 94.224 120.198 -3.673 1.00 67.32 N
ATOM 17 C5 A B 235 93.655 121.179 -2.872 1.00 66.60 C
ATOM 18 C6 A B 235 93.654 121.380 -1.489 1.00 66.08 C
ATOM 19 N6 A B 235 94.254 120.567 -0.621 1.00 65.94 N
ATOM 20 N1 A B 235 93.001 122.459 -1.015 1.00 66.80 N
ATOM 21 C2 A B 235 92.391 123.273 -1.881 1.00 66.71 C
ATOM 22 N3 A B 235 92.314 123.186 -3.199 1.00 66.51 N
ATOM 23 C4 A B 235 92.976 122.104 -3.639 1.00 66.42 C
ATOM 24 P A B 236 91.326 124.808 -9.595 1.00 64.10 P
ATOM 25 OP1 A B 236 92.402 124.584 -10.598 1.00 64.06 O
ATOM 26 OP2 A B 236 90.915 126.196 -9.238 1.00 63.39 O
ATOM 27 O5' A B 236 90.028 123.997 -10.038 1.00 63.06 O
TER
Atoms:
OP1: (94.531,113.001,-10.992)
OP2: (95.059,111.642,-8.868)
C3': (94.392,116.665,-7.950)
C1': (93.896,115.832,-5.794)
C5': (92.936,114.811,-8.898)
O6: (94.531,112.223,-1.035)
O4': (92.784,115.530,-6.606)
C8: (94.570,113.471,-5.147)
C2: (93.280,115.520,-1.497)
C6: (94.196,113.248,-1.643)
C5: (94.267,113.517,-3.040)
C4: (93.859,114.753,-3.501)
P: (94.194,112.618,-9.593)
C4': (93.032,115.982,-7.964)
C2': (95.075,116.028,-6.747)
O2': (96.082,116.844,-6.181)
N1: (93.677,114.331,-0.938)
N2: (92.788,116.433,-0.644)
N3: (93.358,115.792,-2.794)
N7: (94.701,112.716,-4.090)
N9: (94.089,114.728,-4.858)
O5': (94.064,113.939,-8.719)
O3': (94.228,118.064,-7.786)
OP2: (95.059,111.642,-8.868)
C3': (94.392,116.665,-7.950)
C1': (93.896,115.832,-5.794)
C5': (92.936,114.811,-8.898)
O6: (94.531,112.223,-1.035)
O4': (92.784,115.530,-6.606)
C8: (94.570,113.471,-5.147)
C2: (93.280,115.520,-1.497)
C6: (94.196,113.248,-1.643)
C5: (94.267,113.517,-3.040)
C4: (93.859,114.753,-3.501)
P: (94.194,112.618,-9.593)
C4': (93.032,115.982,-7.964)
C2': (95.075,116.028,-6.747)
O2': (96.082,116.844,-6.181)
N1: (93.677,114.331,-0.938)
N2: (92.788,116.433,-0.644)
N3: (93.358,115.792,-2.794)
N7: (94.701,112.716,-4.090)
N9: (94.089,114.728,-4.858)
O5': (94.064,113.939,-8.719)
O3': (94.228,118.064,-7.786)
OP1: (94.225,118.524,-10.242)
OP2: (96.187,119.272,-8.757)
C3': (92.720,122.991,-8.353)
C1': (92.537,122.352,-6.105)
C5': (92.533,120.520,-8.988)
O4': (91.811,121.393,-6.848)
C8: (93.877,120.545,-4.887)
O2': (93.994,124.225,-6.659)
C6: (93.654,121.380,-1.489)
C5: (93.655,121.179,-2.872)
C4: (92.976,122.104,-3.639)
P: (94.725,119.056,-8.947)
C4': (91.924,121.694,-8.266)
C2': (93.551,122.949,-7.080)
C2: (92.391,123.273,-1.881)
N1: (93.001,122.459,-1.015)
N3: (92.314,123.186,-3.199)
N6: (94.254,120.567,-0.621)
N7: (94.224,120.198,-3.673)
N9: (93.114,121.688,-4.939)
O5': (93.930,120.402,-8.651)
O3': (91.816,124.078,-8.263)
OP2: (96.187,119.272,-8.757)
C3': (92.720,122.991,-8.353)
C1': (92.537,122.352,-6.105)
C5': (92.533,120.520,-8.988)
O4': (91.811,121.393,-6.848)
C8: (93.877,120.545,-4.887)
O2': (93.994,124.225,-6.659)
C6: (93.654,121.380,-1.489)
C5: (93.655,121.179,-2.872)
C4: (92.976,122.104,-3.639)
P: (94.725,119.056,-8.947)
C4': (91.924,121.694,-8.266)
C2': (93.551,122.949,-7.080)
C2: (92.391,123.273,-1.881)
N1: (93.001,122.459,-1.015)
N3: (92.314,123.186,-3.199)
N6: (94.254,120.567,-0.621)
N7: (94.224,120.198,-3.673)
N9: (93.114,121.688,-4.939)
O5': (93.930,120.402,-8.651)
O3': (91.816,124.078,-8.263)
Image (generated by PyMOL):