Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3TRA:A9:A44
Extra
PDB:
ATOM 1 O3' A A 8 6.277 4.162 -2.437 1.00 0.00 O
ATOM 2 P G A 9 6.446 2.666 -1.839 1.00 0.45 P
ATOM 3 OP1 G A 9 5.113 2.142 -1.390 1.00 0.00 O
ATOM 4 OP2 G A 9 7.453 2.829 -0.762 1.00 0.00 O
ATOM 5 O5' G A 9 6.953 1.850 -3.095 1.00 4.42 O
ATOM 6 C5' G A 9 7.477 0.496 -2.960 1.00 5.35 C
ATOM 7 C4' G A 9 8.243 0.313 -4.261 1.00 2.36 C
ATOM 8 O4' G A 9 7.393 0.639 -5.337 1.00 0.55 O
ATOM 9 C3' G A 9 9.455 1.217 -4.410 1.00 0.00 C
ATOM 10 O3' G A 9 10.613 0.728 -3.737 1.00 0.00 O
ATOM 11 C2' G A 9 9.606 1.258 -5.935 1.00 1.71 C
ATOM 12 O2' G A 9 10.311 0.082 -6.294 1.00 2.71 O
ATOM 13 C1' G A 9 8.159 1.224 -6.384 1.00 2.21 C
ATOM 14 N9 G A 9 7.694 2.591 -6.668 1.00 0.60 N
ATOM 15 C8 G A 9 6.645 3.250 -6.070 1.00 1.44 C
ATOM 16 N7 G A 9 6.464 4.468 -6.518 1.00 1.83 N
ATOM 17 C5 G A 9 7.465 4.617 -7.475 1.00 2.54 C
ATOM 18 C6 G A 9 7.797 5.705 -8.327 1.00 5.36 C
ATOM 19 O6 G A 9 7.248 6.807 -8.387 1.00 8.65 O
ATOM 20 N1 G A 9 8.864 5.467 -9.149 1.00 2.93 N
ATOM 21 C2 G A 9 9.540 4.291 -9.164 1.00 0.97 C
ATOM 22 N2 G A 9 10.552 4.236 -10.031 1.00 1.16 N
ATOM 23 N3 G A 9 9.268 3.237 -8.387 1.00 5.45 N
ATOM 24 C4 G A 9 8.225 3.468 -7.580 1.00 1.74 C
ATOM 25 P U A 10 11.909 1.632 -3.453 1.00 3.38 P
ATOM 26 OP1 U A 10 13.019 0.898 -2.766 1.00 3.68 O
ATOM 27 OP2 U A 10 11.354 2.734 -2.631 1.00 3.68 O
ATOM 28 O5' U A 10 12.380 2.047 -4.904 1.00 1.01 O
TER
ATOM 1 O3' A B 43 -3.407 8.493 -2.422 1.00 2.06 O
ATOM 2 P G B 44 -2.647 9.126 -1.151 1.00 15.56 P
ATOM 3 OP1 G B 44 -3.467 8.956 0.090 1.00 9.64 O
ATOM 4 OP2 G B 44 -2.430 10.547 -1.510 1.00 10.79 O
ATOM 5 O5' G B 44 -1.321 8.235 -1.076 1.00 0.00 O
ATOM 6 C5' G B 44 -1.592 6.820 -1.286 1.00 0.77 C
ATOM 7 C4' G B 44 -0.344 6.256 -1.944 1.00 2.91 C
ATOM 8 O4' G B 44 -0.223 6.766 -3.274 1.00 6.98 O
ATOM 9 C3' G B 44 0.965 6.637 -1.271 1.00 2.52 C
ATOM 10 O3' G B 44 1.278 5.828 -0.134 1.00 3.21 O
ATOM 11 C2' G B 44 1.972 6.460 -2.407 1.00 2.07 C
ATOM 12 O2' G B 44 2.285 5.080 -2.467 1.00 8.74 O
ATOM 13 C1' G B 44 1.152 6.909 -3.618 1.00 2.89 C
ATOM 14 N9 G B 44 1.604 8.282 -3.917 1.00 3.99 N
ATOM 15 C8 G B 44 1.122 9.493 -3.513 1.00 2.54 C
ATOM 16 N7 G B 44 1.803 10.513 -3.992 1.00 1.80 N
ATOM 17 C5 G B 44 2.810 9.928 -4.754 1.00 1.94 C
ATOM 18 C6 G B 44 3.865 10.486 -5.516 1.00 1.45 C
ATOM 19 O6 G B 44 4.124 11.689 -5.666 1.00 3.47 O
ATOM 20 N1 G B 44 4.667 9.568 -6.144 1.00 0.00 N
ATOM 21 C2 G B 44 4.462 8.228 -6.025 1.00 1.99 C
ATOM 22 N2 G B 44 5.331 7.446 -6.698 1.00 7.86 N
ATOM 23 N3 G B 44 3.491 7.650 -5.322 1.00 3.02 N
ATOM 24 C4 G B 44 2.701 8.554 -4.709 1.00 3.81 C
ATOM 25 P A B 45 1.544 6.589 1.271 1.00 3.60 P
ATOM 26 OP1 A B 45 0.754 5.943 2.362 1.00 3.00 O
ATOM 27 OP2 A B 45 1.091 7.976 0.957 1.00 6.05 O
ATOM 28 O5' A B 45 3.105 6.460 1.480 1.00 0.00 O
TER
ATOM 2 P G A 9 6.446 2.666 -1.839 1.00 0.45 P
ATOM 3 OP1 G A 9 5.113 2.142 -1.390 1.00 0.00 O
ATOM 4 OP2 G A 9 7.453 2.829 -0.762 1.00 0.00 O
ATOM 5 O5' G A 9 6.953 1.850 -3.095 1.00 4.42 O
ATOM 6 C5' G A 9 7.477 0.496 -2.960 1.00 5.35 C
ATOM 7 C4' G A 9 8.243 0.313 -4.261 1.00 2.36 C
ATOM 8 O4' G A 9 7.393 0.639 -5.337 1.00 0.55 O
ATOM 9 C3' G A 9 9.455 1.217 -4.410 1.00 0.00 C
ATOM 10 O3' G A 9 10.613 0.728 -3.737 1.00 0.00 O
ATOM 11 C2' G A 9 9.606 1.258 -5.935 1.00 1.71 C
ATOM 12 O2' G A 9 10.311 0.082 -6.294 1.00 2.71 O
ATOM 13 C1' G A 9 8.159 1.224 -6.384 1.00 2.21 C
ATOM 14 N9 G A 9 7.694 2.591 -6.668 1.00 0.60 N
ATOM 15 C8 G A 9 6.645 3.250 -6.070 1.00 1.44 C
ATOM 16 N7 G A 9 6.464 4.468 -6.518 1.00 1.83 N
ATOM 17 C5 G A 9 7.465 4.617 -7.475 1.00 2.54 C
ATOM 18 C6 G A 9 7.797 5.705 -8.327 1.00 5.36 C
ATOM 19 O6 G A 9 7.248 6.807 -8.387 1.00 8.65 O
ATOM 20 N1 G A 9 8.864 5.467 -9.149 1.00 2.93 N
ATOM 21 C2 G A 9 9.540 4.291 -9.164 1.00 0.97 C
ATOM 22 N2 G A 9 10.552 4.236 -10.031 1.00 1.16 N
ATOM 23 N3 G A 9 9.268 3.237 -8.387 1.00 5.45 N
ATOM 24 C4 G A 9 8.225 3.468 -7.580 1.00 1.74 C
ATOM 25 P U A 10 11.909 1.632 -3.453 1.00 3.38 P
ATOM 26 OP1 U A 10 13.019 0.898 -2.766 1.00 3.68 O
ATOM 27 OP2 U A 10 11.354 2.734 -2.631 1.00 3.68 O
ATOM 28 O5' U A 10 12.380 2.047 -4.904 1.00 1.01 O
TER
ATOM 1 O3' A B 43 -3.407 8.493 -2.422 1.00 2.06 O
ATOM 2 P G B 44 -2.647 9.126 -1.151 1.00 15.56 P
ATOM 3 OP1 G B 44 -3.467 8.956 0.090 1.00 9.64 O
ATOM 4 OP2 G B 44 -2.430 10.547 -1.510 1.00 10.79 O
ATOM 5 O5' G B 44 -1.321 8.235 -1.076 1.00 0.00 O
ATOM 6 C5' G B 44 -1.592 6.820 -1.286 1.00 0.77 C
ATOM 7 C4' G B 44 -0.344 6.256 -1.944 1.00 2.91 C
ATOM 8 O4' G B 44 -0.223 6.766 -3.274 1.00 6.98 O
ATOM 9 C3' G B 44 0.965 6.637 -1.271 1.00 2.52 C
ATOM 10 O3' G B 44 1.278 5.828 -0.134 1.00 3.21 O
ATOM 11 C2' G B 44 1.972 6.460 -2.407 1.00 2.07 C
ATOM 12 O2' G B 44 2.285 5.080 -2.467 1.00 8.74 O
ATOM 13 C1' G B 44 1.152 6.909 -3.618 1.00 2.89 C
ATOM 14 N9 G B 44 1.604 8.282 -3.917 1.00 3.99 N
ATOM 15 C8 G B 44 1.122 9.493 -3.513 1.00 2.54 C
ATOM 16 N7 G B 44 1.803 10.513 -3.992 1.00 1.80 N
ATOM 17 C5 G B 44 2.810 9.928 -4.754 1.00 1.94 C
ATOM 18 C6 G B 44 3.865 10.486 -5.516 1.00 1.45 C
ATOM 19 O6 G B 44 4.124 11.689 -5.666 1.00 3.47 O
ATOM 20 N1 G B 44 4.667 9.568 -6.144 1.00 0.00 N
ATOM 21 C2 G B 44 4.462 8.228 -6.025 1.00 1.99 C
ATOM 22 N2 G B 44 5.331 7.446 -6.698 1.00 7.86 N
ATOM 23 N3 G B 44 3.491 7.650 -5.322 1.00 3.02 N
ATOM 24 C4 G B 44 2.701 8.554 -4.709 1.00 3.81 C
ATOM 25 P A B 45 1.544 6.589 1.271 1.00 3.60 P
ATOM 26 OP1 A B 45 0.754 5.943 2.362 1.00 3.00 O
ATOM 27 OP2 A B 45 1.091 7.976 0.957 1.00 6.05 O
ATOM 28 O5' A B 45 3.105 6.460 1.480 1.00 0.00 O
TER
Atoms:
OP1: (5.113,2.142,-1.390)
OP2: (7.453,2.829,-0.762)
C3': (9.455,1.217,-4.410)
C1': (8.159,1.224,-6.384)
C5': (7.477,0.496,-2.960)
O6: (7.248,6.807,-8.387)
O4': (7.393,0.639,-5.337)
C8: (6.645,3.250,-6.070)
C2: (9.540,4.291,-9.164)
C6: (7.797,5.705,-8.327)
C5: (7.465,4.617,-7.475)
C4: (8.225,3.468,-7.580)
P: (6.446,2.666,-1.839)
C4': (8.243,0.313,-4.261)
C2': (9.606,1.258,-5.935)
O2': (10.311,0.082,-6.294)
N1: (8.864,5.467,-9.149)
N2: (10.552,4.236,-10.031)
N3: (9.268,3.237,-8.387)
N7: (6.464,4.468,-6.518)
N9: (7.694,2.591,-6.668)
O5': (6.953,1.850,-3.095)
O3': (10.613,0.728,-3.737)
OP2: (7.453,2.829,-0.762)
C3': (9.455,1.217,-4.410)
C1': (8.159,1.224,-6.384)
C5': (7.477,0.496,-2.960)
O6: (7.248,6.807,-8.387)
O4': (7.393,0.639,-5.337)
C8: (6.645,3.250,-6.070)
C2: (9.540,4.291,-9.164)
C6: (7.797,5.705,-8.327)
C5: (7.465,4.617,-7.475)
C4: (8.225,3.468,-7.580)
P: (6.446,2.666,-1.839)
C4': (8.243,0.313,-4.261)
C2': (9.606,1.258,-5.935)
O2': (10.311,0.082,-6.294)
N1: (8.864,5.467,-9.149)
N2: (10.552,4.236,-10.031)
N3: (9.268,3.237,-8.387)
N7: (6.464,4.468,-6.518)
N9: (7.694,2.591,-6.668)
O5': (6.953,1.850,-3.095)
O3': (10.613,0.728,-3.737)
OP1: (-3.467,8.956,0.090)
OP2: (-2.430,10.547,-1.510)
C3': (0.965,6.637,-1.271)
C1': (1.152,6.909,-3.618)
C5': (-1.592,6.820,-1.286)
O6: (4.124,11.689,-5.666)
O4': (-0.223,6.766,-3.274)
C8: (1.122,9.493,-3.513)
C2: (4.462,8.228,-6.025)
C6: (3.865,10.486,-5.516)
C5: (2.810,9.928,-4.754)
C4: (2.701,8.554,-4.709)
P: (-2.647,9.126,-1.151)
C4': (-0.344,6.256,-1.944)
C2': (1.972,6.460,-2.407)
O2': (2.285,5.080,-2.467)
N1: (4.667,9.568,-6.144)
N2: (5.331,7.446,-6.698)
N3: (3.491,7.650,-5.322)
N7: (1.803,10.513,-3.992)
N9: (1.604,8.282,-3.917)
O5': (-1.321,8.235,-1.076)
O3': (1.278,5.828,-0.134)
OP2: (-2.430,10.547,-1.510)
C3': (0.965,6.637,-1.271)
C1': (1.152,6.909,-3.618)
C5': (-1.592,6.820,-1.286)
O6: (4.124,11.689,-5.666)
O4': (-0.223,6.766,-3.274)
C8: (1.122,9.493,-3.513)
C2: (4.462,8.228,-6.025)
C6: (3.865,10.486,-5.516)
C5: (2.810,9.928,-4.754)
C4: (2.701,8.554,-4.709)
P: (-2.647,9.126,-1.151)
C4': (-0.344,6.256,-1.944)
C2': (1.972,6.460,-2.407)
O2': (2.285,5.080,-2.467)
N1: (4.667,9.568,-6.144)
N2: (5.331,7.446,-6.698)
N3: (3.491,7.650,-5.322)
N7: (1.803,10.513,-3.992)
N9: (1.604,8.282,-3.917)
O5': (-1.321,8.235,-1.076)
O3': (1.278,5.828,-0.134)
Image (generated by PyMOL):