Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A575:A558
Extra
PDB:
ATOM 1 O3' C A 574 -13.366 90.010 115.047 1.00 67.32 O
ATOM 2 P A A 575 -13.020 90.475 113.550 1.00 69.20 P
ATOM 3 OP1 A A 575 -12.289 91.769 113.577 1.00 68.17 O
ATOM 4 OP2 A A 575 -14.260 90.347 112.755 1.00 69.81 O
ATOM 5 O5' A A 575 -12.034 89.373 112.984 1.00 68.11 O
ATOM 6 C5' A A 575 -11.900 89.227 111.577 1.00 69.37 C
ATOM 7 C4' A A 575 -10.459 89.054 111.204 1.00 70.77 C
ATOM 8 O4' A A 575 -9.675 90.190 111.676 1.00 72.10 O
ATOM 9 C3' A A 575 -9.793 87.818 111.781 1.00 70.64 C
ATOM 10 O3' A A 575 -8.938 87.318 110.781 1.00 70.19 O
ATOM 11 C2' A A 575 -9.028 88.369 112.985 1.00 71.29 C
ATOM 12 O2' A A 575 -7.892 87.625 113.356 1.00 70.11 O
ATOM 13 C1' A A 575 -8.586 89.722 112.455 1.00 72.13 C
ATOM 14 N9 A A 575 -8.286 90.701 113.498 1.00 73.53 N
ATOM 15 C8 A A 575 -9.160 91.487 114.212 1.00 74.24 C
ATOM 16 N7 A A 575 -8.572 92.306 115.051 1.00 74.41 N
ATOM 17 C5 A A 575 -7.219 92.033 114.889 1.00 74.45 C
ATOM 18 C6 A A 575 -6.066 92.568 115.495 1.00 73.99 C
ATOM 19 N6 A A 575 -6.096 93.523 116.424 1.00 73.28 N
ATOM 20 N1 A A 575 -4.869 92.079 115.107 1.00 73.87 N
ATOM 21 C2 A A 575 -4.841 91.113 114.180 1.00 74.14 C
ATOM 22 N3 A A 575 -5.851 90.525 113.540 1.00 74.56 N
ATOM 23 C4 A A 575 -7.030 91.038 113.943 1.00 74.35 C
ATOM 24 P G A 576 -9.273 85.910 110.091 1.00 72.92 P
ATOM 25 OP1 G A 576 -10.742 85.745 109.934 1.00 73.77 O
ATOM 26 OP2 G A 576 -8.502 84.882 110.834 1.00 72.71 O
ATOM 27 O5' G A 576 -8.667 86.068 108.626 1.00 72.08 O
TER
ATOM 1 O3' A B 557 -2.082 95.639 117.761 1.00 56.27 O
ATOM 2 P C B 558 -2.985 95.322 119.044 1.00 59.55 P
ATOM 3 OP1 C B 558 -2.016 95.014 120.121 1.00 59.08 O
ATOM 4 OP2 C B 558 -4.046 94.333 118.705 1.00 56.30 O
ATOM 5 O5' C B 558 -3.622 96.739 119.389 1.00 59.90 O
ATOM 6 C5' C B 558 -2.760 97.839 119.701 1.00 64.71 C
ATOM 7 C4' C B 558 -3.548 99.091 119.953 1.00 68.62 C
ATOM 8 O4' C B 558 -4.339 99.419 118.782 1.00 70.40 O
ATOM 9 C3' C B 558 -4.556 99.038 121.081 1.00 70.53 C
ATOM 10 O3' C B 558 -3.944 99.212 122.357 1.00 72.80 O
ATOM 11 C2' C B 558 -5.480 100.187 120.705 1.00 71.64 C
ATOM 12 O2' C B 558 -4.883 101.445 120.976 1.00 70.79 O
ATOM 13 C1' C B 558 -5.564 100.012 119.184 1.00 71.32 C
ATOM 14 N1 C B 558 -6.670 99.141 118.720 1.00 72.52 N
ATOM 15 C2 C B 558 -7.971 99.681 118.555 1.00 73.04 C
ATOM 16 O2 C B 558 -8.169 100.888 118.788 1.00 72.68 O
ATOM 17 N3 C B 558 -8.975 98.863 118.143 1.00 74.08 N
ATOM 18 C4 C B 558 -8.729 97.569 117.898 1.00 74.45 C
ATOM 19 N4 C B 558 -9.749 96.792 117.513 1.00 75.08 N
ATOM 20 C5 C B 558 -7.427 97.009 118.042 1.00 73.87 C
ATOM 21 C6 C B 558 -6.441 97.818 118.452 1.00 72.93 C
ATOM 22 P C B 559 -4.397 98.279 123.587 1.00 75.03 P
ATOM 23 OP1 C B 559 -3.705 98.776 124.805 1.00 74.13 O
ATOM 24 OP2 C B 559 -4.236 96.854 123.180 1.00 74.43 O
ATOM 25 O5' C B 559 -5.955 98.582 123.739 1.00 75.15 O
TER
ATOM 2 P A A 575 -13.020 90.475 113.550 1.00 69.20 P
ATOM 3 OP1 A A 575 -12.289 91.769 113.577 1.00 68.17 O
ATOM 4 OP2 A A 575 -14.260 90.347 112.755 1.00 69.81 O
ATOM 5 O5' A A 575 -12.034 89.373 112.984 1.00 68.11 O
ATOM 6 C5' A A 575 -11.900 89.227 111.577 1.00 69.37 C
ATOM 7 C4' A A 575 -10.459 89.054 111.204 1.00 70.77 C
ATOM 8 O4' A A 575 -9.675 90.190 111.676 1.00 72.10 O
ATOM 9 C3' A A 575 -9.793 87.818 111.781 1.00 70.64 C
ATOM 10 O3' A A 575 -8.938 87.318 110.781 1.00 70.19 O
ATOM 11 C2' A A 575 -9.028 88.369 112.985 1.00 71.29 C
ATOM 12 O2' A A 575 -7.892 87.625 113.356 1.00 70.11 O
ATOM 13 C1' A A 575 -8.586 89.722 112.455 1.00 72.13 C
ATOM 14 N9 A A 575 -8.286 90.701 113.498 1.00 73.53 N
ATOM 15 C8 A A 575 -9.160 91.487 114.212 1.00 74.24 C
ATOM 16 N7 A A 575 -8.572 92.306 115.051 1.00 74.41 N
ATOM 17 C5 A A 575 -7.219 92.033 114.889 1.00 74.45 C
ATOM 18 C6 A A 575 -6.066 92.568 115.495 1.00 73.99 C
ATOM 19 N6 A A 575 -6.096 93.523 116.424 1.00 73.28 N
ATOM 20 N1 A A 575 -4.869 92.079 115.107 1.00 73.87 N
ATOM 21 C2 A A 575 -4.841 91.113 114.180 1.00 74.14 C
ATOM 22 N3 A A 575 -5.851 90.525 113.540 1.00 74.56 N
ATOM 23 C4 A A 575 -7.030 91.038 113.943 1.00 74.35 C
ATOM 24 P G A 576 -9.273 85.910 110.091 1.00 72.92 P
ATOM 25 OP1 G A 576 -10.742 85.745 109.934 1.00 73.77 O
ATOM 26 OP2 G A 576 -8.502 84.882 110.834 1.00 72.71 O
ATOM 27 O5' G A 576 -8.667 86.068 108.626 1.00 72.08 O
TER
ATOM 1 O3' A B 557 -2.082 95.639 117.761 1.00 56.27 O
ATOM 2 P C B 558 -2.985 95.322 119.044 1.00 59.55 P
ATOM 3 OP1 C B 558 -2.016 95.014 120.121 1.00 59.08 O
ATOM 4 OP2 C B 558 -4.046 94.333 118.705 1.00 56.30 O
ATOM 5 O5' C B 558 -3.622 96.739 119.389 1.00 59.90 O
ATOM 6 C5' C B 558 -2.760 97.839 119.701 1.00 64.71 C
ATOM 7 C4' C B 558 -3.548 99.091 119.953 1.00 68.62 C
ATOM 8 O4' C B 558 -4.339 99.419 118.782 1.00 70.40 O
ATOM 9 C3' C B 558 -4.556 99.038 121.081 1.00 70.53 C
ATOM 10 O3' C B 558 -3.944 99.212 122.357 1.00 72.80 O
ATOM 11 C2' C B 558 -5.480 100.187 120.705 1.00 71.64 C
ATOM 12 O2' C B 558 -4.883 101.445 120.976 1.00 70.79 O
ATOM 13 C1' C B 558 -5.564 100.012 119.184 1.00 71.32 C
ATOM 14 N1 C B 558 -6.670 99.141 118.720 1.00 72.52 N
ATOM 15 C2 C B 558 -7.971 99.681 118.555 1.00 73.04 C
ATOM 16 O2 C B 558 -8.169 100.888 118.788 1.00 72.68 O
ATOM 17 N3 C B 558 -8.975 98.863 118.143 1.00 74.08 N
ATOM 18 C4 C B 558 -8.729 97.569 117.898 1.00 74.45 C
ATOM 19 N4 C B 558 -9.749 96.792 117.513 1.00 75.08 N
ATOM 20 C5 C B 558 -7.427 97.009 118.042 1.00 73.87 C
ATOM 21 C6 C B 558 -6.441 97.818 118.452 1.00 72.93 C
ATOM 22 P C B 559 -4.397 98.279 123.587 1.00 75.03 P
ATOM 23 OP1 C B 559 -3.705 98.776 124.805 1.00 74.13 O
ATOM 24 OP2 C B 559 -4.236 96.854 123.180 1.00 74.43 O
ATOM 25 O5' C B 559 -5.955 98.582 123.739 1.00 75.15 O
TER
Atoms:
OP1: (-12.289,91.769,113.577)
OP2: (-14.260,90.347,112.755)
C3': (-9.793,87.818,111.781)
C1': (-8.586,89.722,112.455)
C5': (-11.900,89.227,111.577)
O4': (-9.675,90.190,111.676)
C8: (-9.160,91.487,114.212)
O2': (-7.892,87.625,113.356)
C6: (-6.066,92.568,115.495)
C5: (-7.219,92.033,114.889)
C4: (-7.030,91.038,113.943)
P: (-13.020,90.475,113.550)
C4': (-10.459,89.054,111.204)
C2': (-9.028,88.369,112.985)
C2: (-4.841,91.113,114.180)
N1: (-4.869,92.079,115.107)
N3: (-5.851,90.525,113.540)
N6: (-6.096,93.523,116.424)
N7: (-8.572,92.306,115.051)
N9: (-8.286,90.701,113.498)
O5': (-12.034,89.373,112.984)
O3': (-8.938,87.318,110.781)
OP2: (-14.260,90.347,112.755)
C3': (-9.793,87.818,111.781)
C1': (-8.586,89.722,112.455)
C5': (-11.900,89.227,111.577)
O4': (-9.675,90.190,111.676)
C8: (-9.160,91.487,114.212)
O2': (-7.892,87.625,113.356)
C6: (-6.066,92.568,115.495)
C5: (-7.219,92.033,114.889)
C4: (-7.030,91.038,113.943)
P: (-13.020,90.475,113.550)
C4': (-10.459,89.054,111.204)
C2': (-9.028,88.369,112.985)
C2: (-4.841,91.113,114.180)
N1: (-4.869,92.079,115.107)
N3: (-5.851,90.525,113.540)
N6: (-6.096,93.523,116.424)
N7: (-8.572,92.306,115.051)
N9: (-8.286,90.701,113.498)
O5': (-12.034,89.373,112.984)
O3': (-8.938,87.318,110.781)
C2: (-7.971,99.681,118.555)
OP1: (-2.016,95.014,120.121)
OP2: (-4.046,94.333,118.705)
C4: (-8.729,97.569,117.898)
O5': (-3.622,96.739,119.389)
C3': (-4.556,99.038,121.081)
C1': (-5.564,100.012,119.184)
O4': (-4.339,99.419,118.782)
C5': (-2.760,97.839,119.701)
P: (-2.985,95.322,119.044)
O2: (-8.169,100.888,118.788)
C4': (-3.548,99.091,119.953)
C2': (-5.480,100.187,120.705)
O2': (-4.883,101.445,120.976)
N1: (-6.670,99.141,118.720)
N3: (-8.975,98.863,118.143)
N4: (-9.749,96.792,117.513)
C6: (-6.441,97.818,118.452)
C5: (-7.427,97.009,118.042)
O3': (-3.944,99.212,122.357)
OP1: (-2.016,95.014,120.121)
OP2: (-4.046,94.333,118.705)
C4: (-8.729,97.569,117.898)
O5': (-3.622,96.739,119.389)
C3': (-4.556,99.038,121.081)
C1': (-5.564,100.012,119.184)
O4': (-4.339,99.419,118.782)
C5': (-2.760,97.839,119.701)
P: (-2.985,95.322,119.044)
O2: (-8.169,100.888,118.788)
C4': (-3.548,99.091,119.953)
C2': (-5.480,100.187,120.705)
O2': (-4.883,101.445,120.976)
N1: (-6.670,99.141,118.720)
N3: (-8.975,98.863,118.143)
N4: (-9.749,96.792,117.513)
C6: (-6.441,97.818,118.452)
C5: (-7.427,97.009,118.042)
O3': (-3.944,99.212,122.357)
Image (generated by PyMOL):