Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQ8:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.585 102.432 106.154 1.00 49.79 O
ATOM 2 P G A 580 -6.469 102.788 104.592 1.00 48.43 P
ATOM 3 OP1 G A 580 -6.204 104.247 104.505 1.00 49.24 O
ATOM 4 OP2 G A 580 -7.643 102.207 103.881 1.00 49.55 O
ATOM 5 O5' G A 580 -5.183 101.979 104.108 1.00 47.99 O
ATOM 6 C5' G A 580 -3.857 102.310 104.578 1.00 44.65 C
ATOM 7 C4' G A 580 -2.853 101.366 103.964 1.00 44.96 C
ATOM 8 O4' G A 580 -3.107 100.018 104.440 1.00 44.36 O
ATOM 9 C3' G A 580 -2.941 101.266 102.450 1.00 45.74 C
ATOM 10 O3' G A 580 -2.118 102.249 101.835 1.00 47.64 O
ATOM 11 C2' G A 580 -2.388 99.874 102.169 1.00 45.23 C
ATOM 12 O2' G A 580 -0.979 99.852 102.106 1.00 48.37 O
ATOM 13 C1' G A 580 -2.878 99.088 103.392 1.00 44.38 C
ATOM 14 N9 G A 580 -4.121 98.368 103.134 1.00 43.62 N
ATOM 15 C8 G A 580 -5.406 98.821 103.343 1.00 43.52 C
ATOM 16 N7 G A 580 -6.317 97.967 102.962 1.00 43.64 N
ATOM 17 C5 G A 580 -5.594 96.883 102.484 1.00 41.76 C
ATOM 18 C6 G A 580 -6.040 95.670 101.929 1.00 40.79 C
ATOM 19 O6 G A 580 -7.203 95.295 101.739 1.00 44.49 O
ATOM 20 N1 G A 580 -4.976 94.848 101.573 1.00 39.95 N
ATOM 21 C2 G A 580 -3.646 95.159 101.736 1.00 41.28 C
ATOM 22 N2 G A 580 -2.755 94.223 101.340 1.00 39.80 N
ATOM 23 N3 G A 580 -3.217 96.298 102.251 1.00 40.58 N
ATOM 24 C4 G A 580 -4.237 97.107 102.599 1.00 41.77 C
ATOM 25 P A A 581 -2.742 103.652 101.354 1.00 49.96 P
ATOM 26 OP1 A A 581 -2.622 104.610 102.491 1.00 46.64 O
ATOM 27 OP2 A A 581 -4.065 103.439 100.716 1.00 48.64 O
ATOM 28 O5' A A 581 -1.724 104.110 100.217 1.00 49.59 O
TER
ATOM 1 O3' G B 580 -2.118 102.249 101.835 1.00 47.64 O
ATOM 2 P A B 581 -2.742 103.652 101.354 1.00 49.96 P
ATOM 3 OP1 A B 581 -2.622 104.610 102.491 1.00 46.64 O
ATOM 4 OP2 A B 581 -4.065 103.439 100.716 1.00 48.64 O
ATOM 5 O5' A B 581 -1.724 104.110 100.217 1.00 49.59 O
ATOM 6 C5' A B 581 -0.375 104.514 100.542 1.00 48.04 C
ATOM 7 C4' A B 581 0.547 104.202 99.393 1.00 47.11 C
ATOM 8 O4' A B 581 0.694 102.765 99.276 1.00 47.89 O
ATOM 9 C3' A B 581 0.036 104.647 98.033 1.00 46.97 C
ATOM 10 O3' A B 581 0.336 106.018 97.784 1.00 44.92 O
ATOM 11 C2' A B 581 0.753 103.688 97.095 1.00 47.80 C
ATOM 12 O2' A B 581 2.101 104.054 96.890 1.00 50.34 O
ATOM 13 C1' A B 581 0.708 102.392 97.907 1.00 49.70 C
ATOM 14 N9 A B 581 -0.497 101.598 97.651 1.00 53.92 N
ATOM 15 C8 A B 581 -1.550 101.384 98.512 1.00 55.04 C
ATOM 16 N7 A B 581 -2.511 100.654 98.002 1.00 56.38 N
ATOM 17 C5 A B 581 -2.064 100.361 96.720 1.00 57.04 C
ATOM 18 C6 A B 581 -2.635 99.624 95.663 1.00 57.31 C
ATOM 19 N6 A B 581 -3.827 99.026 95.734 1.00 56.66 N
ATOM 20 N1 A B 581 -1.930 99.525 94.514 1.00 58.69 N
ATOM 21 C2 A B 581 -0.735 100.127 94.443 1.00 57.78 C
ATOM 22 N3 A B 581 -0.094 100.843 95.365 1.00 57.91 N
ATOM 23 C4 A B 581 -0.820 100.926 96.493 1.00 55.81 C
ATOM 24 P C B 582 -0.729 106.939 97.005 1.00 44.78 P
ATOM 25 OP1 C B 582 -0.141 108.286 96.793 1.00 43.14 O
ATOM 26 OP2 C B 582 -2.030 106.827 97.703 1.00 44.83 O
ATOM 27 O5' C B 582 -0.867 106.222 95.592 1.00 41.87 O
TER
ATOM 2 P G A 580 -6.469 102.788 104.592 1.00 48.43 P
ATOM 3 OP1 G A 580 -6.204 104.247 104.505 1.00 49.24 O
ATOM 4 OP2 G A 580 -7.643 102.207 103.881 1.00 49.55 O
ATOM 5 O5' G A 580 -5.183 101.979 104.108 1.00 47.99 O
ATOM 6 C5' G A 580 -3.857 102.310 104.578 1.00 44.65 C
ATOM 7 C4' G A 580 -2.853 101.366 103.964 1.00 44.96 C
ATOM 8 O4' G A 580 -3.107 100.018 104.440 1.00 44.36 O
ATOM 9 C3' G A 580 -2.941 101.266 102.450 1.00 45.74 C
ATOM 10 O3' G A 580 -2.118 102.249 101.835 1.00 47.64 O
ATOM 11 C2' G A 580 -2.388 99.874 102.169 1.00 45.23 C
ATOM 12 O2' G A 580 -0.979 99.852 102.106 1.00 48.37 O
ATOM 13 C1' G A 580 -2.878 99.088 103.392 1.00 44.38 C
ATOM 14 N9 G A 580 -4.121 98.368 103.134 1.00 43.62 N
ATOM 15 C8 G A 580 -5.406 98.821 103.343 1.00 43.52 C
ATOM 16 N7 G A 580 -6.317 97.967 102.962 1.00 43.64 N
ATOM 17 C5 G A 580 -5.594 96.883 102.484 1.00 41.76 C
ATOM 18 C6 G A 580 -6.040 95.670 101.929 1.00 40.79 C
ATOM 19 O6 G A 580 -7.203 95.295 101.739 1.00 44.49 O
ATOM 20 N1 G A 580 -4.976 94.848 101.573 1.00 39.95 N
ATOM 21 C2 G A 580 -3.646 95.159 101.736 1.00 41.28 C
ATOM 22 N2 G A 580 -2.755 94.223 101.340 1.00 39.80 N
ATOM 23 N3 G A 580 -3.217 96.298 102.251 1.00 40.58 N
ATOM 24 C4 G A 580 -4.237 97.107 102.599 1.00 41.77 C
ATOM 25 P A A 581 -2.742 103.652 101.354 1.00 49.96 P
ATOM 26 OP1 A A 581 -2.622 104.610 102.491 1.00 46.64 O
ATOM 27 OP2 A A 581 -4.065 103.439 100.716 1.00 48.64 O
ATOM 28 O5' A A 581 -1.724 104.110 100.217 1.00 49.59 O
TER
ATOM 1 O3' G B 580 -2.118 102.249 101.835 1.00 47.64 O
ATOM 2 P A B 581 -2.742 103.652 101.354 1.00 49.96 P
ATOM 3 OP1 A B 581 -2.622 104.610 102.491 1.00 46.64 O
ATOM 4 OP2 A B 581 -4.065 103.439 100.716 1.00 48.64 O
ATOM 5 O5' A B 581 -1.724 104.110 100.217 1.00 49.59 O
ATOM 6 C5' A B 581 -0.375 104.514 100.542 1.00 48.04 C
ATOM 7 C4' A B 581 0.547 104.202 99.393 1.00 47.11 C
ATOM 8 O4' A B 581 0.694 102.765 99.276 1.00 47.89 O
ATOM 9 C3' A B 581 0.036 104.647 98.033 1.00 46.97 C
ATOM 10 O3' A B 581 0.336 106.018 97.784 1.00 44.92 O
ATOM 11 C2' A B 581 0.753 103.688 97.095 1.00 47.80 C
ATOM 12 O2' A B 581 2.101 104.054 96.890 1.00 50.34 O
ATOM 13 C1' A B 581 0.708 102.392 97.907 1.00 49.70 C
ATOM 14 N9 A B 581 -0.497 101.598 97.651 1.00 53.92 N
ATOM 15 C8 A B 581 -1.550 101.384 98.512 1.00 55.04 C
ATOM 16 N7 A B 581 -2.511 100.654 98.002 1.00 56.38 N
ATOM 17 C5 A B 581 -2.064 100.361 96.720 1.00 57.04 C
ATOM 18 C6 A B 581 -2.635 99.624 95.663 1.00 57.31 C
ATOM 19 N6 A B 581 -3.827 99.026 95.734 1.00 56.66 N
ATOM 20 N1 A B 581 -1.930 99.525 94.514 1.00 58.69 N
ATOM 21 C2 A B 581 -0.735 100.127 94.443 1.00 57.78 C
ATOM 22 N3 A B 581 -0.094 100.843 95.365 1.00 57.91 N
ATOM 23 C4 A B 581 -0.820 100.926 96.493 1.00 55.81 C
ATOM 24 P C B 582 -0.729 106.939 97.005 1.00 44.78 P
ATOM 25 OP1 C B 582 -0.141 108.286 96.793 1.00 43.14 O
ATOM 26 OP2 C B 582 -2.030 106.827 97.703 1.00 44.83 O
ATOM 27 O5' C B 582 -0.867 106.222 95.592 1.00 41.87 O
TER
Atoms:
OP1: (-6.204,104.247,104.505)
OP2: (-7.643,102.207,103.881)
C3': (-2.941,101.266,102.450)
C1': (-2.878,99.088,103.392)
C5': (-3.857,102.310,104.578)
O6: (-7.203,95.295,101.739)
O4': (-3.107,100.018,104.440)
C8: (-5.406,98.821,103.343)
C2: (-3.646,95.159,101.736)
C6: (-6.040,95.670,101.929)
C5: (-5.594,96.883,102.484)
C4: (-4.237,97.107,102.599)
P: (-6.469,102.788,104.592)
C4': (-2.853,101.366,103.964)
C2': (-2.388,99.874,102.169)
O2': (-0.979,99.852,102.106)
N1: (-4.976,94.848,101.573)
N2: (-2.755,94.223,101.340)
N3: (-3.217,96.298,102.251)
N7: (-6.317,97.967,102.962)
N9: (-4.121,98.368,103.134)
O5': (-5.183,101.979,104.108)
O3': (-2.118,102.249,101.835)
OP2: (-7.643,102.207,103.881)
C3': (-2.941,101.266,102.450)
C1': (-2.878,99.088,103.392)
C5': (-3.857,102.310,104.578)
O6: (-7.203,95.295,101.739)
O4': (-3.107,100.018,104.440)
C8: (-5.406,98.821,103.343)
C2: (-3.646,95.159,101.736)
C6: (-6.040,95.670,101.929)
C5: (-5.594,96.883,102.484)
C4: (-4.237,97.107,102.599)
P: (-6.469,102.788,104.592)
C4': (-2.853,101.366,103.964)
C2': (-2.388,99.874,102.169)
O2': (-0.979,99.852,102.106)
N1: (-4.976,94.848,101.573)
N2: (-2.755,94.223,101.340)
N3: (-3.217,96.298,102.251)
N7: (-6.317,97.967,102.962)
N9: (-4.121,98.368,103.134)
O5': (-5.183,101.979,104.108)
O3': (-2.118,102.249,101.835)
OP1: (-2.622,104.610,102.491)
OP2: (-4.065,103.439,100.716)
C3': (0.036,104.647,98.033)
C1': (0.708,102.392,97.907)
C5': (-0.375,104.514,100.542)
O4': (0.694,102.765,99.276)
C8: (-1.550,101.384,98.512)
O2': (2.101,104.054,96.890)
C6: (-2.635,99.624,95.663)
C5: (-2.064,100.361,96.720)
C4: (-0.820,100.926,96.493)
P: (-2.742,103.652,101.354)
C4': (0.547,104.202,99.393)
C2': (0.753,103.688,97.095)
C2: (-0.735,100.127,94.443)
N1: (-1.930,99.525,94.514)
N3: (-0.094,100.843,95.365)
N6: (-3.827,99.026,95.734)
N7: (-2.511,100.654,98.002)
N9: (-0.497,101.598,97.651)
O5': (-1.724,104.110,100.217)
O3': (0.336,106.018,97.784)
OP2: (-4.065,103.439,100.716)
C3': (0.036,104.647,98.033)
C1': (0.708,102.392,97.907)
C5': (-0.375,104.514,100.542)
O4': (0.694,102.765,99.276)
C8: (-1.550,101.384,98.512)
O2': (2.101,104.054,96.890)
C6: (-2.635,99.624,95.663)
C5: (-2.064,100.361,96.720)
C4: (-0.820,100.926,96.493)
P: (-2.742,103.652,101.354)
C4': (0.547,104.202,99.393)
C2': (0.753,103.688,97.095)
C2: (-0.735,100.127,94.443)
N1: (-1.930,99.525,94.514)
N3: (-0.094,100.843,95.365)
N6: (-3.827,99.026,95.734)
N7: (-2.511,100.654,98.002)
N9: (-0.497,101.598,97.651)
O5': (-1.724,104.110,100.217)
O3': (0.336,106.018,97.784)
Image (generated by PyMOL):