Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQK:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.482 102.478 106.294 1.00 54.18 O
ATOM 2 P G A 580 -6.418 102.847 104.730 1.00 53.06 P
ATOM 3 OP1 G A 580 -6.188 104.308 104.656 1.00 52.63 O
ATOM 4 OP2 G A 580 -7.595 102.246 104.039 1.00 54.37 O
ATOM 5 O5' G A 580 -5.128 102.078 104.198 1.00 52.46 O
ATOM 6 C5' G A 580 -3.809 102.377 104.706 1.00 47.80 C
ATOM 7 C4' G A 580 -2.801 101.436 104.093 1.00 46.37 C
ATOM 8 O4' G A 580 -3.040 100.085 104.565 1.00 45.04 O
ATOM 9 C3' G A 580 -2.879 101.335 102.579 1.00 46.65 C
ATOM 10 O3' G A 580 -2.079 102.336 101.971 1.00 49.91 O
ATOM 11 C2' G A 580 -2.286 99.959 102.306 1.00 46.55 C
ATOM 12 O2' G A 580 -0.872 99.975 102.274 1.00 49.00 O
ATOM 13 C1' G A 580 -2.783 99.160 103.519 1.00 44.75 C
ATOM 14 N9 G A 580 -4.018 98.438 103.236 1.00 44.04 N
ATOM 15 C8 G A 580 -5.302 98.889 103.439 1.00 44.48 C
ATOM 16 N7 G A 580 -6.209 98.045 103.036 1.00 44.64 N
ATOM 17 C5 G A 580 -5.485 96.965 102.554 1.00 43.29 C
ATOM 18 C6 G A 580 -5.927 95.764 101.980 1.00 42.85 C
ATOM 19 O6 G A 580 -7.090 95.397 101.768 1.00 46.81 O
ATOM 20 N1 G A 580 -4.863 94.944 101.628 1.00 42.43 N
ATOM 21 C2 G A 580 -3.537 95.246 101.808 1.00 43.60 C
ATOM 22 N2 G A 580 -2.651 94.310 101.418 1.00 43.65 N
ATOM 23 N3 G A 580 -3.110 96.376 102.337 1.00 42.93 N
ATOM 24 C4 G A 580 -4.131 97.185 102.683 1.00 43.37 C
ATOM 25 P A A 581 -2.754 103.662 101.370 1.00 52.22 P
ATOM 26 OP1 A A 581 -2.764 104.690 102.453 1.00 49.02 O
ATOM 27 OP2 A A 581 -4.012 103.320 100.665 1.00 50.00 O
ATOM 28 O5' A A 581 -1.706 104.128 100.269 1.00 51.84 O
TER
ATOM 1 O3' G B 580 -2.079 102.336 101.971 1.00 49.91 O
ATOM 2 P A B 581 -2.754 103.662 101.370 1.00 52.22 P
ATOM 3 OP1 A B 581 -2.764 104.690 102.453 1.00 49.02 O
ATOM 4 OP2 A B 581 -4.012 103.320 100.665 1.00 50.00 O
ATOM 5 O5' A B 581 -1.706 104.128 100.269 1.00 51.84 O
ATOM 6 C5' A B 581 -0.377 104.560 100.636 1.00 49.68 C
ATOM 7 C4' A B 581 0.578 104.272 99.508 1.00 48.96 C
ATOM 8 O4' A B 581 0.768 102.841 99.397 1.00 47.97 O
ATOM 9 C3' A B 581 0.076 104.708 98.141 1.00 48.02 C
ATOM 10 O3' A B 581 0.381 106.078 97.902 1.00 45.35 O
ATOM 11 C2' A B 581 0.807 103.753 97.212 1.00 49.35 C
ATOM 12 O2' A B 581 2.148 104.139 97.021 1.00 52.90 O
ATOM 13 C1' A B 581 0.781 102.460 98.031 1.00 52.33 C
ATOM 14 N9 A B 581 -0.408 101.640 97.786 1.00 57.83 N
ATOM 15 C8 A B 581 -1.456 101.417 98.650 1.00 60.12 C
ATOM 16 N7 A B 581 -2.407 100.670 98.148 1.00 62.03 N
ATOM 17 C5 A B 581 -1.959 100.374 96.869 1.00 62.36 C
ATOM 18 C6 A B 581 -2.525 99.627 95.818 1.00 63.66 C
ATOM 19 N6 A B 581 -3.714 99.022 95.895 1.00 63.07 N
ATOM 20 N1 A B 581 -1.821 99.526 94.670 1.00 64.38 N
ATOM 21 C2 A B 581 -0.629 100.136 94.595 1.00 64.39 C
ATOM 22 N3 A B 581 0.008 100.864 95.514 1.00 63.11 N
ATOM 23 C4 A B 581 -0.720 100.950 96.638 1.00 60.43 C
ATOM 24 P C B 582 -0.682 107.016 97.146 1.00 44.65 P
ATOM 25 OP1 C B 582 -0.078 108.360 96.976 1.00 44.10 O
ATOM 26 OP2 C B 582 -1.986 106.900 97.829 1.00 46.91 O
ATOM 27 O5' C B 582 -0.835 106.338 95.714 1.00 42.95 O
TER
ATOM 2 P G A 580 -6.418 102.847 104.730 1.00 53.06 P
ATOM 3 OP1 G A 580 -6.188 104.308 104.656 1.00 52.63 O
ATOM 4 OP2 G A 580 -7.595 102.246 104.039 1.00 54.37 O
ATOM 5 O5' G A 580 -5.128 102.078 104.198 1.00 52.46 O
ATOM 6 C5' G A 580 -3.809 102.377 104.706 1.00 47.80 C
ATOM 7 C4' G A 580 -2.801 101.436 104.093 1.00 46.37 C
ATOM 8 O4' G A 580 -3.040 100.085 104.565 1.00 45.04 O
ATOM 9 C3' G A 580 -2.879 101.335 102.579 1.00 46.65 C
ATOM 10 O3' G A 580 -2.079 102.336 101.971 1.00 49.91 O
ATOM 11 C2' G A 580 -2.286 99.959 102.306 1.00 46.55 C
ATOM 12 O2' G A 580 -0.872 99.975 102.274 1.00 49.00 O
ATOM 13 C1' G A 580 -2.783 99.160 103.519 1.00 44.75 C
ATOM 14 N9 G A 580 -4.018 98.438 103.236 1.00 44.04 N
ATOM 15 C8 G A 580 -5.302 98.889 103.439 1.00 44.48 C
ATOM 16 N7 G A 580 -6.209 98.045 103.036 1.00 44.64 N
ATOM 17 C5 G A 580 -5.485 96.965 102.554 1.00 43.29 C
ATOM 18 C6 G A 580 -5.927 95.764 101.980 1.00 42.85 C
ATOM 19 O6 G A 580 -7.090 95.397 101.768 1.00 46.81 O
ATOM 20 N1 G A 580 -4.863 94.944 101.628 1.00 42.43 N
ATOM 21 C2 G A 580 -3.537 95.246 101.808 1.00 43.60 C
ATOM 22 N2 G A 580 -2.651 94.310 101.418 1.00 43.65 N
ATOM 23 N3 G A 580 -3.110 96.376 102.337 1.00 42.93 N
ATOM 24 C4 G A 580 -4.131 97.185 102.683 1.00 43.37 C
ATOM 25 P A A 581 -2.754 103.662 101.370 1.00 52.22 P
ATOM 26 OP1 A A 581 -2.764 104.690 102.453 1.00 49.02 O
ATOM 27 OP2 A A 581 -4.012 103.320 100.665 1.00 50.00 O
ATOM 28 O5' A A 581 -1.706 104.128 100.269 1.00 51.84 O
TER
ATOM 1 O3' G B 580 -2.079 102.336 101.971 1.00 49.91 O
ATOM 2 P A B 581 -2.754 103.662 101.370 1.00 52.22 P
ATOM 3 OP1 A B 581 -2.764 104.690 102.453 1.00 49.02 O
ATOM 4 OP2 A B 581 -4.012 103.320 100.665 1.00 50.00 O
ATOM 5 O5' A B 581 -1.706 104.128 100.269 1.00 51.84 O
ATOM 6 C5' A B 581 -0.377 104.560 100.636 1.00 49.68 C
ATOM 7 C4' A B 581 0.578 104.272 99.508 1.00 48.96 C
ATOM 8 O4' A B 581 0.768 102.841 99.397 1.00 47.97 O
ATOM 9 C3' A B 581 0.076 104.708 98.141 1.00 48.02 C
ATOM 10 O3' A B 581 0.381 106.078 97.902 1.00 45.35 O
ATOM 11 C2' A B 581 0.807 103.753 97.212 1.00 49.35 C
ATOM 12 O2' A B 581 2.148 104.139 97.021 1.00 52.90 O
ATOM 13 C1' A B 581 0.781 102.460 98.031 1.00 52.33 C
ATOM 14 N9 A B 581 -0.408 101.640 97.786 1.00 57.83 N
ATOM 15 C8 A B 581 -1.456 101.417 98.650 1.00 60.12 C
ATOM 16 N7 A B 581 -2.407 100.670 98.148 1.00 62.03 N
ATOM 17 C5 A B 581 -1.959 100.374 96.869 1.00 62.36 C
ATOM 18 C6 A B 581 -2.525 99.627 95.818 1.00 63.66 C
ATOM 19 N6 A B 581 -3.714 99.022 95.895 1.00 63.07 N
ATOM 20 N1 A B 581 -1.821 99.526 94.670 1.00 64.38 N
ATOM 21 C2 A B 581 -0.629 100.136 94.595 1.00 64.39 C
ATOM 22 N3 A B 581 0.008 100.864 95.514 1.00 63.11 N
ATOM 23 C4 A B 581 -0.720 100.950 96.638 1.00 60.43 C
ATOM 24 P C B 582 -0.682 107.016 97.146 1.00 44.65 P
ATOM 25 OP1 C B 582 -0.078 108.360 96.976 1.00 44.10 O
ATOM 26 OP2 C B 582 -1.986 106.900 97.829 1.00 46.91 O
ATOM 27 O5' C B 582 -0.835 106.338 95.714 1.00 42.95 O
TER
Atoms:
OP1: (-6.188,104.308,104.656)
OP2: (-7.595,102.246,104.039)
C3': (-2.879,101.335,102.579)
C1': (-2.783,99.160,103.519)
C5': (-3.809,102.377,104.706)
O6: (-7.090,95.397,101.768)
O4': (-3.040,100.085,104.565)
C8: (-5.302,98.889,103.439)
C2: (-3.537,95.246,101.808)
C6: (-5.927,95.764,101.980)
C5: (-5.485,96.965,102.554)
C4: (-4.131,97.185,102.683)
P: (-6.418,102.847,104.730)
C4': (-2.801,101.436,104.093)
C2': (-2.286,99.959,102.306)
O2': (-0.872,99.975,102.274)
N1: (-4.863,94.944,101.628)
N2: (-2.651,94.310,101.418)
N3: (-3.110,96.376,102.337)
N7: (-6.209,98.045,103.036)
N9: (-4.018,98.438,103.236)
O5': (-5.128,102.078,104.198)
O3': (-2.079,102.336,101.971)
OP2: (-7.595,102.246,104.039)
C3': (-2.879,101.335,102.579)
C1': (-2.783,99.160,103.519)
C5': (-3.809,102.377,104.706)
O6: (-7.090,95.397,101.768)
O4': (-3.040,100.085,104.565)
C8: (-5.302,98.889,103.439)
C2: (-3.537,95.246,101.808)
C6: (-5.927,95.764,101.980)
C5: (-5.485,96.965,102.554)
C4: (-4.131,97.185,102.683)
P: (-6.418,102.847,104.730)
C4': (-2.801,101.436,104.093)
C2': (-2.286,99.959,102.306)
O2': (-0.872,99.975,102.274)
N1: (-4.863,94.944,101.628)
N2: (-2.651,94.310,101.418)
N3: (-3.110,96.376,102.337)
N7: (-6.209,98.045,103.036)
N9: (-4.018,98.438,103.236)
O5': (-5.128,102.078,104.198)
O3': (-2.079,102.336,101.971)
OP1: (-2.764,104.690,102.453)
OP2: (-4.012,103.320,100.665)
C3': (0.076,104.708,98.141)
C1': (0.781,102.460,98.031)
C5': (-0.377,104.560,100.636)
O4': (0.768,102.841,99.397)
C8: (-1.456,101.417,98.650)
O2': (2.148,104.139,97.021)
C6: (-2.525,99.627,95.818)
C5: (-1.959,100.374,96.869)
C4: (-0.720,100.950,96.638)
P: (-2.754,103.662,101.370)
C4': (0.578,104.272,99.508)
C2': (0.807,103.753,97.212)
C2: (-0.629,100.136,94.595)
N1: (-1.821,99.526,94.670)
N3: (0.008,100.864,95.514)
N6: (-3.714,99.022,95.895)
N7: (-2.407,100.670,98.148)
N9: (-0.408,101.640,97.786)
O5': (-1.706,104.128,100.269)
O3': (0.381,106.078,97.902)
OP2: (-4.012,103.320,100.665)
C3': (0.076,104.708,98.141)
C1': (0.781,102.460,98.031)
C5': (-0.377,104.560,100.636)
O4': (0.768,102.841,99.397)
C8: (-1.456,101.417,98.650)
O2': (2.148,104.139,97.021)
C6: (-2.525,99.627,95.818)
C5: (-1.959,100.374,96.869)
C4: (-0.720,100.950,96.638)
P: (-2.754,103.662,101.370)
C4': (0.578,104.272,99.508)
C2': (0.807,103.753,97.212)
C2: (-0.629,100.136,94.595)
N1: (-1.821,99.526,94.670)
N3: (0.008,100.864,95.514)
N6: (-3.714,99.022,95.895)
N7: (-2.407,100.670,98.148)
N9: (-0.408,101.640,97.786)
O5': (-1.706,104.128,100.269)
O3': (0.381,106.078,97.902)
Image (generated by PyMOL):