Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VQO:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.442 102.959 106.244 1.00 53.09 O
ATOM 2 P G A 580 -6.336 103.303 104.676 1.00 49.39 P
ATOM 3 OP1 G A 580 -6.078 104.756 104.568 1.00 51.94 O
ATOM 4 OP2 G A 580 -7.506 102.709 103.982 1.00 52.46 O
ATOM 5 O5' G A 580 -5.054 102.492 104.189 1.00 50.98 O
ATOM 6 C5' G A 580 -3.722 102.858 104.609 1.00 47.04 C
ATOM 7 C4' G A 580 -2.719 101.915 103.991 1.00 46.79 C
ATOM 8 O4' G A 580 -2.950 100.573 104.495 1.00 44.69 O
ATOM 9 C3' G A 580 -2.831 101.783 102.480 1.00 46.49 C
ATOM 10 O3' G A 580 -2.031 102.754 101.824 1.00 50.00 O
ATOM 11 C2' G A 580 -2.241 100.400 102.226 1.00 46.00 C
ATOM 12 O2' G A 580 -0.832 100.412 102.166 1.00 46.89 O
ATOM 13 C1' G A 580 -2.701 99.626 103.467 1.00 44.18 C
ATOM 14 N9 G A 580 -3.927 98.875 103.217 1.00 42.92 N
ATOM 15 C8 G A 580 -5.215 99.306 103.423 1.00 43.01 C
ATOM 16 N7 G A 580 -6.111 98.446 103.030 1.00 44.33 N
ATOM 17 C5 G A 580 -5.375 97.374 102.555 1.00 42.61 C
ATOM 18 C6 G A 580 -5.806 96.153 101.993 1.00 42.63 C
ATOM 19 O6 G A 580 -6.962 95.766 101.791 1.00 45.64 O
ATOM 20 N1 G A 580 -4.729 95.341 101.648 1.00 42.00 N
ATOM 21 C2 G A 580 -3.404 95.667 101.831 1.00 42.75 C
ATOM 22 N2 G A 580 -2.504 94.745 101.450 1.00 40.66 N
ATOM 23 N3 G A 580 -2.992 96.810 102.354 1.00 41.68 N
ATOM 24 C4 G A 580 -4.023 97.612 102.686 1.00 42.31 C
ATOM 25 P A A 581 -2.642 104.186 101.415 1.00 54.06 P
ATOM 26 OP1 A A 581 -2.477 105.098 102.584 1.00 52.56 O
ATOM 27 OP2 A A 581 -3.972 104.049 100.781 1.00 52.58 O
ATOM 28 O5' A A 581 -1.623 104.671 100.293 1.00 55.02 O
TER
ATOM 1 O3' G B 580 -2.031 102.754 101.824 1.00 50.00 O
ATOM 2 P A B 581 -2.642 104.186 101.415 1.00 54.06 P
ATOM 3 OP1 A B 581 -2.477 105.098 102.584 1.00 52.56 O
ATOM 4 OP2 A B 581 -3.972 104.049 100.781 1.00 52.58 O
ATOM 5 O5' A B 581 -1.623 104.671 100.293 1.00 55.02 O
ATOM 6 C5' A B 581 -0.256 104.992 100.622 1.00 53.00 C
ATOM 7 C4' A B 581 0.646 104.659 99.462 1.00 52.73 C
ATOM 8 O4' A B 581 0.776 103.221 99.344 1.00 52.57 O
ATOM 9 C3' A B 581 0.133 105.111 98.106 1.00 52.18 C
ATOM 10 O3' A B 581 0.446 106.483 97.875 1.00 49.36 O
ATOM 11 C2' A B 581 0.850 104.153 97.166 1.00 52.56 C
ATOM 12 O2' A B 581 2.198 104.525 96.979 1.00 53.98 O
ATOM 13 C1' A B 581 0.810 102.852 97.975 1.00 54.43 C
ATOM 14 N9 A B 581 -0.368 102.021 97.710 1.00 58.11 N
ATOM 15 C8 A B 581 -1.408 101.768 98.575 1.00 59.98 C
ATOM 16 N7 A B 581 -2.350 101.013 98.066 1.00 60.42 N
ATOM 17 C5 A B 581 -1.904 100.745 96.781 1.00 60.85 C
ATOM 18 C6 A B 581 -2.465 100.007 95.723 1.00 61.16 C
ATOM 19 N6 A B 581 -3.638 99.374 95.804 1.00 60.92 N
ATOM 20 N1 A B 581 -1.772 99.940 94.566 1.00 62.30 N
ATOM 21 C2 A B 581 -0.592 100.570 94.492 1.00 62.42 C
ATOM 22 N3 A B 581 0.043 101.292 95.418 1.00 61.79 N
ATOM 23 C4 A B 581 -0.677 101.347 96.551 1.00 59.90 C
ATOM 24 P C B 582 -0.610 107.432 97.115 1.00 48.64 P
ATOM 25 OP1 C B 582 0.016 108.766 96.957 1.00 46.46 O
ATOM 26 OP2 C B 582 -1.932 107.329 97.770 1.00 49.03 O
ATOM 27 O5' C B 582 -0.755 106.764 95.682 1.00 46.45 O
TER
ATOM 2 P G A 580 -6.336 103.303 104.676 1.00 49.39 P
ATOM 3 OP1 G A 580 -6.078 104.756 104.568 1.00 51.94 O
ATOM 4 OP2 G A 580 -7.506 102.709 103.982 1.00 52.46 O
ATOM 5 O5' G A 580 -5.054 102.492 104.189 1.00 50.98 O
ATOM 6 C5' G A 580 -3.722 102.858 104.609 1.00 47.04 C
ATOM 7 C4' G A 580 -2.719 101.915 103.991 1.00 46.79 C
ATOM 8 O4' G A 580 -2.950 100.573 104.495 1.00 44.69 O
ATOM 9 C3' G A 580 -2.831 101.783 102.480 1.00 46.49 C
ATOM 10 O3' G A 580 -2.031 102.754 101.824 1.00 50.00 O
ATOM 11 C2' G A 580 -2.241 100.400 102.226 1.00 46.00 C
ATOM 12 O2' G A 580 -0.832 100.412 102.166 1.00 46.89 O
ATOM 13 C1' G A 580 -2.701 99.626 103.467 1.00 44.18 C
ATOM 14 N9 G A 580 -3.927 98.875 103.217 1.00 42.92 N
ATOM 15 C8 G A 580 -5.215 99.306 103.423 1.00 43.01 C
ATOM 16 N7 G A 580 -6.111 98.446 103.030 1.00 44.33 N
ATOM 17 C5 G A 580 -5.375 97.374 102.555 1.00 42.61 C
ATOM 18 C6 G A 580 -5.806 96.153 101.993 1.00 42.63 C
ATOM 19 O6 G A 580 -6.962 95.766 101.791 1.00 45.64 O
ATOM 20 N1 G A 580 -4.729 95.341 101.648 1.00 42.00 N
ATOM 21 C2 G A 580 -3.404 95.667 101.831 1.00 42.75 C
ATOM 22 N2 G A 580 -2.504 94.745 101.450 1.00 40.66 N
ATOM 23 N3 G A 580 -2.992 96.810 102.354 1.00 41.68 N
ATOM 24 C4 G A 580 -4.023 97.612 102.686 1.00 42.31 C
ATOM 25 P A A 581 -2.642 104.186 101.415 1.00 54.06 P
ATOM 26 OP1 A A 581 -2.477 105.098 102.584 1.00 52.56 O
ATOM 27 OP2 A A 581 -3.972 104.049 100.781 1.00 52.58 O
ATOM 28 O5' A A 581 -1.623 104.671 100.293 1.00 55.02 O
TER
ATOM 1 O3' G B 580 -2.031 102.754 101.824 1.00 50.00 O
ATOM 2 P A B 581 -2.642 104.186 101.415 1.00 54.06 P
ATOM 3 OP1 A B 581 -2.477 105.098 102.584 1.00 52.56 O
ATOM 4 OP2 A B 581 -3.972 104.049 100.781 1.00 52.58 O
ATOM 5 O5' A B 581 -1.623 104.671 100.293 1.00 55.02 O
ATOM 6 C5' A B 581 -0.256 104.992 100.622 1.00 53.00 C
ATOM 7 C4' A B 581 0.646 104.659 99.462 1.00 52.73 C
ATOM 8 O4' A B 581 0.776 103.221 99.344 1.00 52.57 O
ATOM 9 C3' A B 581 0.133 105.111 98.106 1.00 52.18 C
ATOM 10 O3' A B 581 0.446 106.483 97.875 1.00 49.36 O
ATOM 11 C2' A B 581 0.850 104.153 97.166 1.00 52.56 C
ATOM 12 O2' A B 581 2.198 104.525 96.979 1.00 53.98 O
ATOM 13 C1' A B 581 0.810 102.852 97.975 1.00 54.43 C
ATOM 14 N9 A B 581 -0.368 102.021 97.710 1.00 58.11 N
ATOM 15 C8 A B 581 -1.408 101.768 98.575 1.00 59.98 C
ATOM 16 N7 A B 581 -2.350 101.013 98.066 1.00 60.42 N
ATOM 17 C5 A B 581 -1.904 100.745 96.781 1.00 60.85 C
ATOM 18 C6 A B 581 -2.465 100.007 95.723 1.00 61.16 C
ATOM 19 N6 A B 581 -3.638 99.374 95.804 1.00 60.92 N
ATOM 20 N1 A B 581 -1.772 99.940 94.566 1.00 62.30 N
ATOM 21 C2 A B 581 -0.592 100.570 94.492 1.00 62.42 C
ATOM 22 N3 A B 581 0.043 101.292 95.418 1.00 61.79 N
ATOM 23 C4 A B 581 -0.677 101.347 96.551 1.00 59.90 C
ATOM 24 P C B 582 -0.610 107.432 97.115 1.00 48.64 P
ATOM 25 OP1 C B 582 0.016 108.766 96.957 1.00 46.46 O
ATOM 26 OP2 C B 582 -1.932 107.329 97.770 1.00 49.03 O
ATOM 27 O5' C B 582 -0.755 106.764 95.682 1.00 46.45 O
TER
Atoms:
OP1: (-6.078,104.756,104.568)
OP2: (-7.506,102.709,103.982)
C3': (-2.831,101.783,102.480)
C1': (-2.701,99.626,103.467)
C5': (-3.722,102.858,104.609)
O6: (-6.962,95.766,101.791)
O4': (-2.950,100.573,104.495)
C8: (-5.215,99.306,103.423)
C2: (-3.404,95.667,101.831)
C6: (-5.806,96.153,101.993)
C5: (-5.375,97.374,102.555)
C4: (-4.023,97.612,102.686)
P: (-6.336,103.303,104.676)
C4': (-2.719,101.915,103.991)
C2': (-2.241,100.400,102.226)
O2': (-0.832,100.412,102.166)
N1: (-4.729,95.341,101.648)
N2: (-2.504,94.745,101.450)
N3: (-2.992,96.810,102.354)
N7: (-6.111,98.446,103.030)
N9: (-3.927,98.875,103.217)
O5': (-5.054,102.492,104.189)
O3': (-2.031,102.754,101.824)
OP2: (-7.506,102.709,103.982)
C3': (-2.831,101.783,102.480)
C1': (-2.701,99.626,103.467)
C5': (-3.722,102.858,104.609)
O6: (-6.962,95.766,101.791)
O4': (-2.950,100.573,104.495)
C8: (-5.215,99.306,103.423)
C2: (-3.404,95.667,101.831)
C6: (-5.806,96.153,101.993)
C5: (-5.375,97.374,102.555)
C4: (-4.023,97.612,102.686)
P: (-6.336,103.303,104.676)
C4': (-2.719,101.915,103.991)
C2': (-2.241,100.400,102.226)
O2': (-0.832,100.412,102.166)
N1: (-4.729,95.341,101.648)
N2: (-2.504,94.745,101.450)
N3: (-2.992,96.810,102.354)
N7: (-6.111,98.446,103.030)
N9: (-3.927,98.875,103.217)
O5': (-5.054,102.492,104.189)
O3': (-2.031,102.754,101.824)
OP1: (-2.477,105.098,102.584)
OP2: (-3.972,104.049,100.781)
C3': (0.133,105.111,98.106)
C1': (0.810,102.852,97.975)
C5': (-0.256,104.992,100.622)
O4': (0.776,103.221,99.344)
C8: (-1.408,101.768,98.575)
O2': (2.198,104.525,96.979)
C6: (-2.465,100.007,95.723)
C5: (-1.904,100.745,96.781)
C4: (-0.677,101.347,96.551)
P: (-2.642,104.186,101.415)
C4': (0.646,104.659,99.462)
C2': (0.850,104.153,97.166)
C2: (-0.592,100.570,94.492)
N1: (-1.772,99.940,94.566)
N3: (0.043,101.292,95.418)
N6: (-3.638,99.374,95.804)
N7: (-2.350,101.013,98.066)
N9: (-0.368,102.021,97.710)
O5': (-1.623,104.671,100.293)
O3': (0.446,106.483,97.875)
OP2: (-3.972,104.049,100.781)
C3': (0.133,105.111,98.106)
C1': (0.810,102.852,97.975)
C5': (-0.256,104.992,100.622)
O4': (0.776,103.221,99.344)
C8: (-1.408,101.768,98.575)
O2': (2.198,104.525,96.979)
C6: (-2.465,100.007,95.723)
C5: (-1.904,100.745,96.781)
C4: (-0.677,101.347,96.551)
P: (-2.642,104.186,101.415)
C4': (0.646,104.659,99.462)
C2': (0.850,104.153,97.166)
C2: (-0.592,100.570,94.492)
N1: (-1.772,99.940,94.566)
N3: (0.043,101.292,95.418)
N6: (-3.638,99.374,95.804)
N7: (-2.350,101.013,98.066)
N9: (-0.368,102.021,97.710)
O5': (-1.623,104.671,100.293)
O3': (0.446,106.483,97.875)
Image (generated by PyMOL):