Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YI2:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.175 103.469 106.236 1.00 63.17 O
ATOM 2 P G A 580 -6.168 103.951 104.703 1.00 64.39 P
ATOM 3 OP1 G A 580 -5.863 105.408 104.714 1.00 62.92 O
ATOM 4 OP2 G A 580 -7.402 103.460 104.032 1.00 64.97 O
ATOM 5 O5' G A 580 -4.956 103.154 104.046 1.00 64.22 O
ATOM 6 C5' G A 580 -3.590 103.403 104.437 1.00 59.73 C
ATOM 7 C4' G A 580 -2.676 102.403 103.776 1.00 57.85 C
ATOM 8 O4' G A 580 -2.986 101.073 104.262 1.00 56.77 O
ATOM 9 C3' G A 580 -2.824 102.291 102.269 1.00 57.01 C
ATOM 10 O3' G A 580 -2.042 103.263 101.602 1.00 58.54 O
ATOM 11 C2' G A 580 -2.286 100.896 101.996 1.00 57.63 C
ATOM 12 O2' G A 580 -0.876 100.843 101.949 1.00 60.00 O
ATOM 13 C1' G A 580 -2.793 100.129 103.220 1.00 56.80 C
ATOM 14 N9 G A 580 -4.065 99.474 102.950 1.00 56.70 N
ATOM 15 C8 G A 580 -5.324 99.965 103.209 1.00 58.56 C
ATOM 16 N7 G A 580 -6.275 99.167 102.809 1.00 59.51 N
ATOM 17 C5 G A 580 -5.606 98.080 102.264 1.00 57.69 C
ATOM 18 C6 G A 580 -6.111 96.901 101.666 1.00 57.98 C
ATOM 19 O6 G A 580 -7.288 96.571 101.491 1.00 60.97 O
ATOM 20 N1 G A 580 -5.086 96.061 101.248 1.00 57.60 N
ATOM 21 C2 G A 580 -3.746 96.323 101.388 1.00 58.01 C
ATOM 22 N2 G A 580 -2.911 95.385 100.923 1.00 58.15 N
ATOM 23 N3 G A 580 -3.261 97.422 101.944 1.00 56.58 N
ATOM 24 C4 G A 580 -4.241 98.250 102.355 1.00 56.55 C
ATOM 25 P A A 581 -2.722 104.612 101.063 1.00 61.51 P
ATOM 26 OP1 A A 581 -2.700 105.594 102.183 1.00 59.67 O
ATOM 27 OP2 A A 581 -4.006 104.287 100.396 1.00 60.67 O
ATOM 28 O5' A A 581 -1.708 105.112 99.941 1.00 62.23 O
TER
ATOM 1 O3' G B 580 -2.042 103.263 101.602 1.00 58.54 O
ATOM 2 P A B 581 -2.722 104.612 101.063 1.00 61.51 P
ATOM 3 OP1 A B 581 -2.700 105.594 102.183 1.00 59.67 O
ATOM 4 OP2 A B 581 -4.006 104.287 100.396 1.00 60.67 O
ATOM 5 O5' A B 581 -1.708 105.112 99.941 1.00 62.23 O
ATOM 6 C5' A B 581 -0.355 105.496 100.268 1.00 60.26 C
ATOM 7 C4' A B 581 0.569 105.168 99.117 1.00 60.68 C
ATOM 8 O4' A B 581 0.727 103.731 99.009 1.00 62.22 O
ATOM 9 C3' A B 581 0.071 105.598 97.748 1.00 58.88 C
ATOM 10 O3' A B 581 0.381 106.956 97.491 1.00 54.72 O
ATOM 11 C2' A B 581 0.810 104.650 96.818 1.00 60.60 C
ATOM 12 O2' A B 581 2.140 105.062 96.597 1.00 61.65 O
ATOM 13 C1' A B 581 0.800 103.359 97.641 1.00 63.70 C
ATOM 14 N9 A B 581 -0.351 102.507 97.353 1.00 68.23 N
ATOM 15 C8 A B 581 -1.397 102.213 98.189 1.00 70.67 C
ATOM 16 N7 A B 581 -2.310 101.447 97.644 1.00 73.45 N
ATOM 17 C5 A B 581 -1.831 101.217 96.365 1.00 73.16 C
ATOM 18 C6 A B 581 -2.350 100.489 95.279 1.00 74.81 C
ATOM 19 N6 A B 581 -3.515 99.836 95.313 1.00 75.83 N
ATOM 20 N1 A B 581 -1.625 100.458 94.141 1.00 75.32 N
ATOM 21 C2 A B 581 -0.460 101.116 94.109 1.00 75.98 C
ATOM 22 N3 A B 581 0.132 101.837 95.063 1.00 74.88 N
ATOM 23 C4 A B 581 -0.617 101.850 96.177 1.00 71.72 C
ATOM 24 P C B 582 -0.705 107.893 96.781 1.00 53.11 P
ATOM 25 OP1 C B 582 -0.113 109.245 96.646 1.00 53.37 O
ATOM 26 OP2 C B 582 -1.981 107.732 97.509 1.00 56.01 O
ATOM 27 O5' C B 582 -0.868 107.247 95.334 1.00 51.66 O
TER
ATOM 2 P G A 580 -6.168 103.951 104.703 1.00 64.39 P
ATOM 3 OP1 G A 580 -5.863 105.408 104.714 1.00 62.92 O
ATOM 4 OP2 G A 580 -7.402 103.460 104.032 1.00 64.97 O
ATOM 5 O5' G A 580 -4.956 103.154 104.046 1.00 64.22 O
ATOM 6 C5' G A 580 -3.590 103.403 104.437 1.00 59.73 C
ATOM 7 C4' G A 580 -2.676 102.403 103.776 1.00 57.85 C
ATOM 8 O4' G A 580 -2.986 101.073 104.262 1.00 56.77 O
ATOM 9 C3' G A 580 -2.824 102.291 102.269 1.00 57.01 C
ATOM 10 O3' G A 580 -2.042 103.263 101.602 1.00 58.54 O
ATOM 11 C2' G A 580 -2.286 100.896 101.996 1.00 57.63 C
ATOM 12 O2' G A 580 -0.876 100.843 101.949 1.00 60.00 O
ATOM 13 C1' G A 580 -2.793 100.129 103.220 1.00 56.80 C
ATOM 14 N9 G A 580 -4.065 99.474 102.950 1.00 56.70 N
ATOM 15 C8 G A 580 -5.324 99.965 103.209 1.00 58.56 C
ATOM 16 N7 G A 580 -6.275 99.167 102.809 1.00 59.51 N
ATOM 17 C5 G A 580 -5.606 98.080 102.264 1.00 57.69 C
ATOM 18 C6 G A 580 -6.111 96.901 101.666 1.00 57.98 C
ATOM 19 O6 G A 580 -7.288 96.571 101.491 1.00 60.97 O
ATOM 20 N1 G A 580 -5.086 96.061 101.248 1.00 57.60 N
ATOM 21 C2 G A 580 -3.746 96.323 101.388 1.00 58.01 C
ATOM 22 N2 G A 580 -2.911 95.385 100.923 1.00 58.15 N
ATOM 23 N3 G A 580 -3.261 97.422 101.944 1.00 56.58 N
ATOM 24 C4 G A 580 -4.241 98.250 102.355 1.00 56.55 C
ATOM 25 P A A 581 -2.722 104.612 101.063 1.00 61.51 P
ATOM 26 OP1 A A 581 -2.700 105.594 102.183 1.00 59.67 O
ATOM 27 OP2 A A 581 -4.006 104.287 100.396 1.00 60.67 O
ATOM 28 O5' A A 581 -1.708 105.112 99.941 1.00 62.23 O
TER
ATOM 1 O3' G B 580 -2.042 103.263 101.602 1.00 58.54 O
ATOM 2 P A B 581 -2.722 104.612 101.063 1.00 61.51 P
ATOM 3 OP1 A B 581 -2.700 105.594 102.183 1.00 59.67 O
ATOM 4 OP2 A B 581 -4.006 104.287 100.396 1.00 60.67 O
ATOM 5 O5' A B 581 -1.708 105.112 99.941 1.00 62.23 O
ATOM 6 C5' A B 581 -0.355 105.496 100.268 1.00 60.26 C
ATOM 7 C4' A B 581 0.569 105.168 99.117 1.00 60.68 C
ATOM 8 O4' A B 581 0.727 103.731 99.009 1.00 62.22 O
ATOM 9 C3' A B 581 0.071 105.598 97.748 1.00 58.88 C
ATOM 10 O3' A B 581 0.381 106.956 97.491 1.00 54.72 O
ATOM 11 C2' A B 581 0.810 104.650 96.818 1.00 60.60 C
ATOM 12 O2' A B 581 2.140 105.062 96.597 1.00 61.65 O
ATOM 13 C1' A B 581 0.800 103.359 97.641 1.00 63.70 C
ATOM 14 N9 A B 581 -0.351 102.507 97.353 1.00 68.23 N
ATOM 15 C8 A B 581 -1.397 102.213 98.189 1.00 70.67 C
ATOM 16 N7 A B 581 -2.310 101.447 97.644 1.00 73.45 N
ATOM 17 C5 A B 581 -1.831 101.217 96.365 1.00 73.16 C
ATOM 18 C6 A B 581 -2.350 100.489 95.279 1.00 74.81 C
ATOM 19 N6 A B 581 -3.515 99.836 95.313 1.00 75.83 N
ATOM 20 N1 A B 581 -1.625 100.458 94.141 1.00 75.32 N
ATOM 21 C2 A B 581 -0.460 101.116 94.109 1.00 75.98 C
ATOM 22 N3 A B 581 0.132 101.837 95.063 1.00 74.88 N
ATOM 23 C4 A B 581 -0.617 101.850 96.177 1.00 71.72 C
ATOM 24 P C B 582 -0.705 107.893 96.781 1.00 53.11 P
ATOM 25 OP1 C B 582 -0.113 109.245 96.646 1.00 53.37 O
ATOM 26 OP2 C B 582 -1.981 107.732 97.509 1.00 56.01 O
ATOM 27 O5' C B 582 -0.868 107.247 95.334 1.00 51.66 O
TER
Atoms:
OP1: (-5.863,105.408,104.714)
OP2: (-7.402,103.460,104.032)
C3': (-2.824,102.291,102.269)
C1': (-2.793,100.129,103.220)
C5': (-3.590,103.403,104.437)
O6: (-7.288,96.571,101.491)
O4': (-2.986,101.073,104.262)
C8: (-5.324,99.965,103.209)
C2: (-3.746,96.323,101.388)
C6: (-6.111,96.901,101.666)
C5: (-5.606,98.080,102.264)
C4: (-4.241,98.250,102.355)
P: (-6.168,103.951,104.703)
C4': (-2.676,102.403,103.776)
C2': (-2.286,100.896,101.996)
O2': (-0.876,100.843,101.949)
N1: (-5.086,96.061,101.248)
N2: (-2.911,95.385,100.923)
N3: (-3.261,97.422,101.944)
N7: (-6.275,99.167,102.809)
N9: (-4.065,99.474,102.950)
O5': (-4.956,103.154,104.046)
O3': (-2.042,103.263,101.602)
OP2: (-7.402,103.460,104.032)
C3': (-2.824,102.291,102.269)
C1': (-2.793,100.129,103.220)
C5': (-3.590,103.403,104.437)
O6: (-7.288,96.571,101.491)
O4': (-2.986,101.073,104.262)
C8: (-5.324,99.965,103.209)
C2: (-3.746,96.323,101.388)
C6: (-6.111,96.901,101.666)
C5: (-5.606,98.080,102.264)
C4: (-4.241,98.250,102.355)
P: (-6.168,103.951,104.703)
C4': (-2.676,102.403,103.776)
C2': (-2.286,100.896,101.996)
O2': (-0.876,100.843,101.949)
N1: (-5.086,96.061,101.248)
N2: (-2.911,95.385,100.923)
N3: (-3.261,97.422,101.944)
N7: (-6.275,99.167,102.809)
N9: (-4.065,99.474,102.950)
O5': (-4.956,103.154,104.046)
O3': (-2.042,103.263,101.602)
OP1: (-2.700,105.594,102.183)
OP2: (-4.006,104.287,100.396)
C3': (0.071,105.598,97.748)
C1': (0.800,103.359,97.641)
C5': (-0.355,105.496,100.268)
O4': (0.727,103.731,99.009)
C8: (-1.397,102.213,98.189)
O2': (2.140,105.062,96.597)
C6: (-2.350,100.489,95.279)
C5: (-1.831,101.217,96.365)
C4: (-0.617,101.850,96.177)
P: (-2.722,104.612,101.063)
C4': (0.569,105.168,99.117)
C2': (0.810,104.650,96.818)
C2: (-0.460,101.116,94.109)
N1: (-1.625,100.458,94.141)
N3: (0.132,101.837,95.063)
N6: (-3.515,99.836,95.313)
N7: (-2.310,101.447,97.644)
N9: (-0.351,102.507,97.353)
O5': (-1.708,105.112,99.941)
O3': (0.381,106.956,97.491)
OP2: (-4.006,104.287,100.396)
C3': (0.071,105.598,97.748)
C1': (0.800,103.359,97.641)
C5': (-0.355,105.496,100.268)
O4': (0.727,103.731,99.009)
C8: (-1.397,102.213,98.189)
O2': (2.140,105.062,96.597)
C6: (-2.350,100.489,95.279)
C5: (-1.831,101.217,96.365)
C4: (-0.617,101.850,96.177)
P: (-2.722,104.612,101.063)
C4': (0.569,105.168,99.117)
C2': (0.810,104.650,96.818)
C2: (-0.460,101.116,94.109)
N1: (-1.625,100.458,94.141)
N3: (0.132,101.837,95.063)
N6: (-3.515,99.836,95.313)
N7: (-2.310,101.447,97.644)
N9: (-0.351,102.507,97.353)
O5': (-1.708,105.112,99.941)
O3': (0.381,106.956,97.491)
Image (generated by PyMOL):