Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3CD6:0580:0581
Extra
PDB:
ATOM 1 O3' A A 579 -6.343 103.711 106.644 1.00 56.83 O
ATOM 2 P G A 580 -6.241 104.169 105.103 1.00 57.69 P
ATOM 3 OP1 G A 580 -5.924 105.621 105.119 1.00 55.77 O
ATOM 4 OP2 G A 580 -7.426 103.686 104.351 1.00 57.62 O
ATOM 5 O5' G A 580 -4.994 103.352 104.535 1.00 57.85 O
ATOM 6 C5' G A 580 -3.640 103.714 104.881 1.00 55.29 C
ATOM 7 C4' G A 580 -2.675 102.723 104.283 1.00 53.59 C
ATOM 8 O4' G A 580 -2.948 101.411 104.830 1.00 54.29 O
ATOM 9 C3' G A 580 -2.788 102.525 102.781 1.00 52.86 C
ATOM 10 O3' G A 580 -2.020 103.477 102.076 1.00 53.12 O
ATOM 11 C2' G A 580 -2.191 101.140 102.591 1.00 53.80 C
ATOM 12 O2' G A 580 -0.778 101.131 102.563 1.00 54.08 O
ATOM 13 C1' G A 580 -2.704 100.422 103.842 1.00 54.68 C
ATOM 14 N9 G A 580 -3.956 99.736 103.551 1.00 55.84 N
ATOM 15 C8 G A 580 -5.234 100.178 103.802 1.00 56.36 C
ATOM 16 N7 G A 580 -6.150 99.369 103.349 1.00 55.92 N
ATOM 17 C5 G A 580 -5.434 98.326 102.781 1.00 55.15 C
ATOM 18 C6 G A 580 -5.883 97.169 102.123 1.00 56.35 C
ATOM 19 O6 G A 580 -7.045 96.824 101.891 1.00 58.65 O
ATOM 20 N1 G A 580 -4.821 96.371 101.709 1.00 56.80 N
ATOM 21 C2 G A 580 -3.492 96.661 101.904 1.00 56.40 C
ATOM 22 N2 G A 580 -2.609 95.766 101.446 1.00 56.59 N
ATOM 23 N3 G A 580 -3.063 97.748 102.508 1.00 55.36 N
ATOM 24 C4 G A 580 -4.080 98.529 102.918 1.00 55.10 C
ATOM 25 P A A 581 -2.709 104.809 101.516 1.00 55.14 P
ATOM 26 OP1 A A 581 -2.687 105.804 102.623 1.00 52.18 O
ATOM 27 OP2 A A 581 -4.001 104.460 100.863 1.00 54.53 O
ATOM 28 O5' A A 581 -1.699 105.283 100.378 1.00 54.18 O
TER
ATOM 1 O3' G B 580 -2.020 103.477 102.076 1.00 53.12 O
ATOM 2 P A B 581 -2.709 104.809 101.516 1.00 55.14 P
ATOM 3 OP1 A B 581 -2.687 105.804 102.623 1.00 52.18 O
ATOM 4 OP2 A B 581 -4.001 104.460 100.863 1.00 54.53 O
ATOM 5 O5' A B 581 -1.699 105.283 100.378 1.00 54.18 O
ATOM 6 C5' A B 581 -0.336 105.648 100.684 1.00 50.59 C
ATOM 7 C4' A B 581 0.569 105.267 99.540 1.00 50.19 C
ATOM 8 O4' A B 581 0.636 103.824 99.441 1.00 52.53 O
ATOM 9 C3' A B 581 0.089 105.715 98.174 1.00 49.60 C
ATOM 10 O3' A B 581 0.475 107.049 97.902 1.00 46.85 O
ATOM 11 C2' A B 581 0.758 104.717 97.248 1.00 52.19 C
ATOM 12 O2' A B 581 2.109 105.048 97.019 1.00 54.05 O
ATOM 13 C1' A B 581 0.671 103.435 98.080 1.00 55.46 C
ATOM 14 N9 A B 581 -0.536 102.655 97.814 1.00 61.46 N
ATOM 15 C8 A B 581 -1.558 102.382 98.689 1.00 64.43 C
ATOM 16 N7 A B 581 -2.531 101.678 98.165 1.00 67.24 N
ATOM 17 C5 A B 581 -2.124 101.470 96.857 1.00 67.23 C
ATOM 18 C6 A B 581 -2.726 100.803 95.777 1.00 68.79 C
ATOM 19 N6 A B 581 -3.917 100.206 95.847 1.00 69.84 N
ATOM 20 N1 A B 581 -2.057 100.776 94.604 1.00 69.96 N
ATOM 21 C2 A B 581 -0.867 101.387 94.533 1.00 69.96 C
ATOM 22 N3 A B 581 -0.199 102.052 95.478 1.00 68.64 N
ATOM 23 C4 A B 581 -0.891 102.057 96.629 1.00 65.79 C
ATOM 24 P C B 582 -0.579 108.051 97.231 1.00 46.65 P
ATOM 25 OP1 C B 582 0.035 109.395 97.093 1.00 47.26 O
ATOM 26 OP2 C B 582 -1.850 107.911 97.969 1.00 48.53 O
ATOM 27 O5' C B 582 -0.790 107.450 95.772 1.00 46.37 O
TER
ATOM 2 P G A 580 -6.241 104.169 105.103 1.00 57.69 P
ATOM 3 OP1 G A 580 -5.924 105.621 105.119 1.00 55.77 O
ATOM 4 OP2 G A 580 -7.426 103.686 104.351 1.00 57.62 O
ATOM 5 O5' G A 580 -4.994 103.352 104.535 1.00 57.85 O
ATOM 6 C5' G A 580 -3.640 103.714 104.881 1.00 55.29 C
ATOM 7 C4' G A 580 -2.675 102.723 104.283 1.00 53.59 C
ATOM 8 O4' G A 580 -2.948 101.411 104.830 1.00 54.29 O
ATOM 9 C3' G A 580 -2.788 102.525 102.781 1.00 52.86 C
ATOM 10 O3' G A 580 -2.020 103.477 102.076 1.00 53.12 O
ATOM 11 C2' G A 580 -2.191 101.140 102.591 1.00 53.80 C
ATOM 12 O2' G A 580 -0.778 101.131 102.563 1.00 54.08 O
ATOM 13 C1' G A 580 -2.704 100.422 103.842 1.00 54.68 C
ATOM 14 N9 G A 580 -3.956 99.736 103.551 1.00 55.84 N
ATOM 15 C8 G A 580 -5.234 100.178 103.802 1.00 56.36 C
ATOM 16 N7 G A 580 -6.150 99.369 103.349 1.00 55.92 N
ATOM 17 C5 G A 580 -5.434 98.326 102.781 1.00 55.15 C
ATOM 18 C6 G A 580 -5.883 97.169 102.123 1.00 56.35 C
ATOM 19 O6 G A 580 -7.045 96.824 101.891 1.00 58.65 O
ATOM 20 N1 G A 580 -4.821 96.371 101.709 1.00 56.80 N
ATOM 21 C2 G A 580 -3.492 96.661 101.904 1.00 56.40 C
ATOM 22 N2 G A 580 -2.609 95.766 101.446 1.00 56.59 N
ATOM 23 N3 G A 580 -3.063 97.748 102.508 1.00 55.36 N
ATOM 24 C4 G A 580 -4.080 98.529 102.918 1.00 55.10 C
ATOM 25 P A A 581 -2.709 104.809 101.516 1.00 55.14 P
ATOM 26 OP1 A A 581 -2.687 105.804 102.623 1.00 52.18 O
ATOM 27 OP2 A A 581 -4.001 104.460 100.863 1.00 54.53 O
ATOM 28 O5' A A 581 -1.699 105.283 100.378 1.00 54.18 O
TER
ATOM 1 O3' G B 580 -2.020 103.477 102.076 1.00 53.12 O
ATOM 2 P A B 581 -2.709 104.809 101.516 1.00 55.14 P
ATOM 3 OP1 A B 581 -2.687 105.804 102.623 1.00 52.18 O
ATOM 4 OP2 A B 581 -4.001 104.460 100.863 1.00 54.53 O
ATOM 5 O5' A B 581 -1.699 105.283 100.378 1.00 54.18 O
ATOM 6 C5' A B 581 -0.336 105.648 100.684 1.00 50.59 C
ATOM 7 C4' A B 581 0.569 105.267 99.540 1.00 50.19 C
ATOM 8 O4' A B 581 0.636 103.824 99.441 1.00 52.53 O
ATOM 9 C3' A B 581 0.089 105.715 98.174 1.00 49.60 C
ATOM 10 O3' A B 581 0.475 107.049 97.902 1.00 46.85 O
ATOM 11 C2' A B 581 0.758 104.717 97.248 1.00 52.19 C
ATOM 12 O2' A B 581 2.109 105.048 97.019 1.00 54.05 O
ATOM 13 C1' A B 581 0.671 103.435 98.080 1.00 55.46 C
ATOM 14 N9 A B 581 -0.536 102.655 97.814 1.00 61.46 N
ATOM 15 C8 A B 581 -1.558 102.382 98.689 1.00 64.43 C
ATOM 16 N7 A B 581 -2.531 101.678 98.165 1.00 67.24 N
ATOM 17 C5 A B 581 -2.124 101.470 96.857 1.00 67.23 C
ATOM 18 C6 A B 581 -2.726 100.803 95.777 1.00 68.79 C
ATOM 19 N6 A B 581 -3.917 100.206 95.847 1.00 69.84 N
ATOM 20 N1 A B 581 -2.057 100.776 94.604 1.00 69.96 N
ATOM 21 C2 A B 581 -0.867 101.387 94.533 1.00 69.96 C
ATOM 22 N3 A B 581 -0.199 102.052 95.478 1.00 68.64 N
ATOM 23 C4 A B 581 -0.891 102.057 96.629 1.00 65.79 C
ATOM 24 P C B 582 -0.579 108.051 97.231 1.00 46.65 P
ATOM 25 OP1 C B 582 0.035 109.395 97.093 1.00 47.26 O
ATOM 26 OP2 C B 582 -1.850 107.911 97.969 1.00 48.53 O
ATOM 27 O5' C B 582 -0.790 107.450 95.772 1.00 46.37 O
TER
Atoms:
OP1: (-5.924,105.621,105.119)
OP2: (-7.426,103.686,104.351)
C3': (-2.788,102.525,102.781)
C1': (-2.704,100.422,103.842)
C5': (-3.640,103.714,104.881)
O6: (-7.045,96.824,101.891)
O4': (-2.948,101.411,104.830)
C8: (-5.234,100.178,103.802)
C2: (-3.492,96.661,101.904)
C6: (-5.883,97.169,102.123)
C5: (-5.434,98.326,102.781)
C4: (-4.080,98.529,102.918)
P: (-6.241,104.169,105.103)
C4': (-2.675,102.723,104.283)
C2': (-2.191,101.140,102.591)
O2': (-0.778,101.131,102.563)
N1: (-4.821,96.371,101.709)
N2: (-2.609,95.766,101.446)
N3: (-3.063,97.748,102.508)
N7: (-6.150,99.369,103.349)
N9: (-3.956,99.736,103.551)
O5': (-4.994,103.352,104.535)
O3': (-2.020,103.477,102.076)
OP2: (-7.426,103.686,104.351)
C3': (-2.788,102.525,102.781)
C1': (-2.704,100.422,103.842)
C5': (-3.640,103.714,104.881)
O6: (-7.045,96.824,101.891)
O4': (-2.948,101.411,104.830)
C8: (-5.234,100.178,103.802)
C2: (-3.492,96.661,101.904)
C6: (-5.883,97.169,102.123)
C5: (-5.434,98.326,102.781)
C4: (-4.080,98.529,102.918)
P: (-6.241,104.169,105.103)
C4': (-2.675,102.723,104.283)
C2': (-2.191,101.140,102.591)
O2': (-0.778,101.131,102.563)
N1: (-4.821,96.371,101.709)
N2: (-2.609,95.766,101.446)
N3: (-3.063,97.748,102.508)
N7: (-6.150,99.369,103.349)
N9: (-3.956,99.736,103.551)
O5': (-4.994,103.352,104.535)
O3': (-2.020,103.477,102.076)
OP1: (-2.687,105.804,102.623)
OP2: (-4.001,104.460,100.863)
C3': (0.089,105.715,98.174)
C1': (0.671,103.435,98.080)
C5': (-0.336,105.648,100.684)
O4': (0.636,103.824,99.441)
C8: (-1.558,102.382,98.689)
O2': (2.109,105.048,97.019)
C6: (-2.726,100.803,95.777)
C5: (-2.124,101.470,96.857)
C4: (-0.891,102.057,96.629)
P: (-2.709,104.809,101.516)
C4': (0.569,105.267,99.540)
C2': (0.758,104.717,97.248)
C2: (-0.867,101.387,94.533)
N1: (-2.057,100.776,94.604)
N3: (-0.199,102.052,95.478)
N6: (-3.917,100.206,95.847)
N7: (-2.531,101.678,98.165)
N9: (-0.536,102.655,97.814)
O5': (-1.699,105.283,100.378)
O3': (0.475,107.049,97.902)
OP2: (-4.001,104.460,100.863)
C3': (0.089,105.715,98.174)
C1': (0.671,103.435,98.080)
C5': (-0.336,105.648,100.684)
O4': (0.636,103.824,99.441)
C8: (-1.558,102.382,98.689)
O2': (2.109,105.048,97.019)
C6: (-2.726,100.803,95.777)
C5: (-2.124,101.470,96.857)
C4: (-0.891,102.057,96.629)
P: (-2.709,104.809,101.516)
C4': (0.569,105.267,99.540)
C2': (0.758,104.717,97.248)
C2: (-0.867,101.387,94.533)
N1: (-2.057,100.776,94.604)
N3: (-0.199,102.052,95.478)
N6: (-3.917,100.206,95.847)
N7: (-2.531,101.678,98.165)
N9: (-0.536,102.655,97.814)
O5': (-1.699,105.283,100.378)
O3': (0.475,107.049,97.902)
Image (generated by PyMOL):