Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12088:12089
Extra
PDB:
ATOM 1 O3' A A2087 -7.066 8.772 74.201 1.00 48.35 O
ATOM 2 P A A2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 3 OP1 A A2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 4 OP2 A A2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 5 O5' A A2088 -4.654 8.363 74.164 1.00 55.06 O
ATOM 6 C5' A A2088 -3.836 8.759 75.258 1.00 54.97 C
ATOM 7 C4' A A2088 -2.625 7.890 75.361 1.00 54.61 C
ATOM 8 O4' A A2088 -1.818 8.338 76.482 1.00 54.54 O
ATOM 9 C3' A A2088 -2.945 6.412 75.612 1.00 54.51 C
ATOM 10 O3' A A2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 11 C2' A A2088 -2.393 6.129 76.994 1.00 54.42 C
ATOM 12 O2' A A2088 -1.894 4.806 77.206 1.00 54.18 O
ATOM 13 C1' A A2088 -1.317 7.206 77.138 1.00 54.33 C
ATOM 14 N9 A A2088 -1.050 7.503 78.519 1.00 54.39 N
ATOM 15 C8 A A2088 -1.952 7.524 79.543 1.00 54.63 C
ATOM 16 N7 A A2088 -1.391 7.610 80.700 1.00 54.60 N
ATOM 17 C5 A A2088 -0.038 7.568 80.387 1.00 54.32 C
ATOM 18 C6 A A2088 1.089 7.616 81.174 1.00 54.17 C
ATOM 19 N6 A A2088 1.016 7.726 82.479 1.00 54.30 N
ATOM 20 N1 A A2088 2.272 7.552 80.546 1.00 53.90 N
ATOM 21 C2 A A2088 2.325 7.458 79.210 1.00 53.79 C
ATOM 22 N3 A A2088 1.345 7.419 78.344 1.00 53.91 N
ATOM 23 C4 A A2088 0.190 7.471 79.031 1.00 54.17 C
ATOM 24 P U A2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 25 OP1 U A2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 26 OP2 U A2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 27 O5' U A2089 -2.577 3.224 73.688 1.00 50.69 O
TER
ATOM 1 O3' A B2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 2 P U B2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 3 OP1 U B2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 4 OP2 U B2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 5 O5' U B2089 -2.577 3.224 73.688 1.00 50.69 O
ATOM 6 C5' U B2089 -2.417 2.430 74.851 1.00 50.61 C
ATOM 7 C4' U B2089 -2.785 0.998 74.614 1.00 50.56 C
ATOM 8 O4' U B2089 -3.637 0.577 75.705 1.00 50.73 O
ATOM 9 C3' U B2089 -3.565 0.720 73.343 1.00 50.67 C
ATOM 10 O3' U B2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 11 C2' U B2089 -5.001 0.807 73.844 1.00 50.99 C
ATOM 12 O2' U B2089 -5.964 0.147 73.050 1.00 51.13 O
ATOM 13 C1' U B2089 -4.888 0.183 75.219 1.00 50.95 C
ATOM 14 N1 U B2089 -5.898 0.662 76.142 1.00 51.23 N
ATOM 15 C2 U B2089 -6.716 -0.256 76.774 1.00 51.36 C
ATOM 16 O2 U B2089 -6.566 -1.437 76.602 1.00 51.24 O
ATOM 17 N3 U B2089 -7.698 0.238 77.611 1.00 51.65 N
ATOM 18 C4 U B2089 -7.875 1.591 77.807 1.00 51.81 C
ATOM 19 O4 U B2089 -8.752 1.954 78.549 1.00 52.08 O
ATOM 20 C5 U B2089 -6.995 2.493 77.117 1.00 51.67 C
ATOM 21 C6 U B2089 -6.051 2.006 76.319 1.00 51.39 C
ATOM 22 P G B2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 23 OP1 G B2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 24 OP2 G B2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 25 O5' G B2090 -3.850 -0.424 70.464 1.00 44.35 O
TER
ATOM 2 P A A2088 -5.735 9.344 73.576 1.00 55.41 P
ATOM 3 OP1 A A2088 -5.561 10.700 74.137 1.00 55.57 O
ATOM 4 OP2 A A2088 -5.815 9.179 72.105 1.00 55.38 O
ATOM 5 O5' A A2088 -4.654 8.363 74.164 1.00 55.06 O
ATOM 6 C5' A A2088 -3.836 8.759 75.258 1.00 54.97 C
ATOM 7 C4' A A2088 -2.625 7.890 75.361 1.00 54.61 C
ATOM 8 O4' A A2088 -1.818 8.338 76.482 1.00 54.54 O
ATOM 9 C3' A A2088 -2.945 6.412 75.612 1.00 54.51 C
ATOM 10 O3' A A2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 11 C2' A A2088 -2.393 6.129 76.994 1.00 54.42 C
ATOM 12 O2' A A2088 -1.894 4.806 77.206 1.00 54.18 O
ATOM 13 C1' A A2088 -1.317 7.206 77.138 1.00 54.33 C
ATOM 14 N9 A A2088 -1.050 7.503 78.519 1.00 54.39 N
ATOM 15 C8 A A2088 -1.952 7.524 79.543 1.00 54.63 C
ATOM 16 N7 A A2088 -1.391 7.610 80.700 1.00 54.60 N
ATOM 17 C5 A A2088 -0.038 7.568 80.387 1.00 54.32 C
ATOM 18 C6 A A2088 1.089 7.616 81.174 1.00 54.17 C
ATOM 19 N6 A A2088 1.016 7.726 82.479 1.00 54.30 N
ATOM 20 N1 A A2088 2.272 7.552 80.546 1.00 53.90 N
ATOM 21 C2 A A2088 2.325 7.458 79.210 1.00 53.79 C
ATOM 22 N3 A A2088 1.345 7.419 78.344 1.00 53.91 N
ATOM 23 C4 A A2088 0.190 7.471 79.031 1.00 54.17 C
ATOM 24 P U A2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 25 OP1 U A2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 26 OP2 U A2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 27 O5' U A2089 -2.577 3.224 73.688 1.00 50.69 O
TER
ATOM 1 O3' A B2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 2 P U B2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 3 OP1 U B2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 4 OP2 U B2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 5 O5' U B2089 -2.577 3.224 73.688 1.00 50.69 O
ATOM 6 C5' U B2089 -2.417 2.430 74.851 1.00 50.61 C
ATOM 7 C4' U B2089 -2.785 0.998 74.614 1.00 50.56 C
ATOM 8 O4' U B2089 -3.637 0.577 75.705 1.00 50.73 O
ATOM 9 C3' U B2089 -3.565 0.720 73.343 1.00 50.67 C
ATOM 10 O3' U B2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 11 C2' U B2089 -5.001 0.807 73.844 1.00 50.99 C
ATOM 12 O2' U B2089 -5.964 0.147 73.050 1.00 51.13 O
ATOM 13 C1' U B2089 -4.888 0.183 75.219 1.00 50.95 C
ATOM 14 N1 U B2089 -5.898 0.662 76.142 1.00 51.23 N
ATOM 15 C2 U B2089 -6.716 -0.256 76.774 1.00 51.36 C
ATOM 16 O2 U B2089 -6.566 -1.437 76.602 1.00 51.24 O
ATOM 17 N3 U B2089 -7.698 0.238 77.611 1.00 51.65 N
ATOM 18 C4 U B2089 -7.875 1.591 77.807 1.00 51.81 C
ATOM 19 O4 U B2089 -8.752 1.954 78.549 1.00 52.08 O
ATOM 20 C5 U B2089 -6.995 2.493 77.117 1.00 51.67 C
ATOM 21 C6 U B2089 -6.051 2.006 76.319 1.00 51.39 C
ATOM 22 P G B2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 23 OP1 G B2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 24 OP2 G B2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 25 O5' G B2090 -3.850 -0.424 70.464 1.00 44.35 O
TER
Atoms:
OP1: (-5.561,10.700,74.137)
OP2: (-5.815,9.179,72.105)
C3': (-2.945,6.412,75.612)
C1': (-1.317,7.206,77.138)
C5': (-3.836,8.759,75.258)
O4': (-1.818,8.338,76.482)
C8: (-1.952,7.524,79.543)
O2': (-1.894,4.806,77.206)
C6: (1.089,7.616,81.174)
C5: (-0.038,7.568,80.387)
C4: (0.190,7.471,79.031)
P: (-5.735,9.344,73.576)
C4': (-2.625,7.890,75.361)
C2': (-2.393,6.129,76.994)
C2: (2.325,7.458,79.210)
N1: (2.272,7.552,80.546)
N3: (1.345,7.419,78.344)
N6: (1.016,7.726,82.479)
N7: (-1.391,7.610,80.700)
N9: (-1.050,7.503,78.519)
O5': (-4.654,8.363,74.164)
O3': (-2.338,5.570,74.649)
OP2: (-5.815,9.179,72.105)
C3': (-2.945,6.412,75.612)
C1': (-1.317,7.206,77.138)
C5': (-3.836,8.759,75.258)
O4': (-1.818,8.338,76.482)
C8: (-1.952,7.524,79.543)
O2': (-1.894,4.806,77.206)
C6: (1.089,7.616,81.174)
C5: (-0.038,7.568,80.387)
C4: (0.190,7.471,79.031)
P: (-5.735,9.344,73.576)
C4': (-2.625,7.890,75.361)
C2': (-2.393,6.129,76.994)
C2: (2.325,7.458,79.210)
N1: (2.272,7.552,80.546)
N3: (1.345,7.419,78.344)
N6: (1.016,7.726,82.479)
N7: (-1.391,7.610,80.700)
N9: (-1.050,7.503,78.519)
O5': (-4.654,8.363,74.164)
O3': (-2.338,5.570,74.649)
C4: (-7.875,1.591,77.807)
N3: (-7.698,0.238,77.611)
OP1: (-3.361,5.279,72.414)
OP2: (-4.596,4.501,74.507)
C2: (-6.716,-0.256,76.774)
C1': (-4.888,0.183,75.219)
C3': (-3.565,0.720,73.343)
O5': (-2.577,3.224,73.688)
O4': (-3.637,0.577,75.705)
C5': (-2.417,2.430,74.851)
P: (-3.314,4.645,73.761)
C4': (-2.785,0.998,74.614)
C2': (-5.001,0.807,73.844)
O2': (-5.964,0.147,73.050)
N1: (-5.898,0.662,76.142)
O4: (-8.752,1.954,78.549)
O2: (-6.566,-1.437,76.602)
C6: (-6.051,2.006,76.319)
C5: (-6.995,2.493,77.117)
O3': (-3.289,-0.613,72.891)
N3: (-7.698,0.238,77.611)
OP1: (-3.361,5.279,72.414)
OP2: (-4.596,4.501,74.507)
C2: (-6.716,-0.256,76.774)
C1': (-4.888,0.183,75.219)
C3': (-3.565,0.720,73.343)
O5': (-2.577,3.224,73.688)
O4': (-3.637,0.577,75.705)
C5': (-2.417,2.430,74.851)
P: (-3.314,4.645,73.761)
C4': (-2.785,0.998,74.614)
C2': (-5.001,0.807,73.844)
O2': (-5.964,0.147,73.050)
N1: (-5.898,0.662,76.142)
O4: (-8.752,1.954,78.549)
O2: (-6.566,-1.437,76.602)
C6: (-6.051,2.006,76.319)
C5: (-6.995,2.493,77.117)
O3': (-3.289,-0.613,72.891)
Image (generated by PyMOL):