Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0575:0558
Extra
PDB:
ATOM 1 O3' C A 574 -13.496 89.838 114.569 1.00 69.81 O
ATOM 2 P A A 575 -13.226 90.495 113.137 1.00 71.92 P
ATOM 3 OP1 A A 575 -12.669 91.854 113.349 1.00 72.25 O
ATOM 4 OP2 A A 575 -14.461 90.326 112.333 1.00 72.85 O
ATOM 5 O5' A A 575 -12.113 89.565 112.490 1.00 71.76 O
ATOM 6 C5' A A 575 -11.924 89.551 111.072 1.00 73.58 C
ATOM 7 C4' A A 575 -10.488 89.242 110.736 1.00 74.60 C
ATOM 8 O4' A A 575 -9.629 90.311 111.224 1.00 74.93 O
ATOM 9 C3' A A 575 -9.931 87.953 111.318 1.00 74.09 C
ATOM 10 O3' A A 575 -9.038 87.409 110.370 1.00 74.52 O
ATOM 11 C2' A A 575 -9.181 88.436 112.556 1.00 74.42 C
ATOM 12 O2' A A 575 -8.111 87.593 112.925 1.00 74.29 O
ATOM 13 C1' A A 575 -8.635 89.771 112.070 1.00 74.43 C
ATOM 14 N9 A A 575 -8.355 90.734 113.135 1.00 74.63 N
ATOM 15 C8 A A 575 -9.238 91.493 113.870 1.00 74.70 C
ATOM 16 N7 A A 575 -8.656 92.304 114.722 1.00 74.75 N
ATOM 17 C5 A A 575 -7.300 92.055 114.544 1.00 75.41 C
ATOM 18 C6 A A 575 -6.147 92.601 115.143 1.00 74.87 C
ATOM 19 N6 A A 575 -6.174 93.560 116.071 1.00 74.81 N
ATOM 20 N1 A A 575 -4.947 92.124 114.744 1.00 74.72 N
ATOM 21 C2 A A 575 -4.916 91.171 113.803 1.00 74.43 C
ATOM 22 N3 A A 575 -5.923 90.586 113.161 1.00 74.38 N
ATOM 23 C4 A A 575 -7.103 91.079 113.582 1.00 75.12 C
ATOM 24 P G A 576 -9.362 85.987 109.710 1.00 76.33 P
ATOM 25 OP1 G A 576 -10.837 85.855 109.693 1.00 76.74 O
ATOM 26 OP2 G A 576 -8.541 84.966 110.410 1.00 76.05 O
ATOM 27 O5' G A 576 -8.854 86.135 108.204 1.00 76.09 O
TER
ATOM 1 O3' A B 557 -2.300 95.864 117.360 1.00 61.27 O
ATOM 2 P C B 558 -3.218 95.575 118.640 1.00 62.96 P
ATOM 3 OP1 C B 558 -2.323 95.220 119.771 1.00 62.71 O
ATOM 4 OP2 C B 558 -4.287 94.629 118.224 1.00 61.90 O
ATOM 5 O5' C B 558 -3.838 97.003 118.964 1.00 62.40 O
ATOM 6 C5' C B 558 -2.976 98.131 119.150 1.00 66.03 C
ATOM 7 C4' C B 558 -3.786 99.364 119.422 1.00 69.96 C
ATOM 8 O4' C B 558 -4.595 99.679 118.261 1.00 71.23 O
ATOM 9 C3' C B 558 -4.789 99.219 120.546 1.00 72.89 C
ATOM 10 O3' C B 558 -4.167 99.385 121.812 1.00 77.28 O
ATOM 11 C2' C B 558 -5.804 100.299 120.201 1.00 72.58 C
ATOM 12 O2' C B 558 -5.345 101.597 120.524 1.00 72.21 O
ATOM 13 C1' C B 558 -5.861 100.163 118.678 1.00 71.50 C
ATOM 14 N1 C B 558 -6.889 99.215 118.203 1.00 71.96 N
ATOM 15 C2 C B 558 -8.208 99.668 118.019 1.00 72.73 C
ATOM 16 O2 C B 558 -8.487 100.857 118.278 1.00 73.94 O
ATOM 17 N3 C B 558 -9.146 98.795 117.567 1.00 71.74 N
ATOM 18 C4 C B 558 -8.811 97.527 117.310 1.00 70.24 C
ATOM 19 N4 C B 558 -9.763 96.703 116.867 1.00 69.78 N
ATOM 20 C5 C B 558 -7.485 97.045 117.495 1.00 70.07 C
ATOM 21 C6 C B 558 -6.567 97.911 117.938 1.00 70.70 C
ATOM 22 P C B 559 -4.525 98.373 123.008 1.00 80.91 P
ATOM 23 OP1 C B 559 -3.736 98.801 124.195 1.00 80.19 O
ATOM 24 OP2 C B 559 -4.404 96.969 122.513 1.00 79.43 O
ATOM 25 O5' C B 559 -6.066 98.672 123.285 1.00 80.52 O
TER
ATOM 2 P A A 575 -13.226 90.495 113.137 1.00 71.92 P
ATOM 3 OP1 A A 575 -12.669 91.854 113.349 1.00 72.25 O
ATOM 4 OP2 A A 575 -14.461 90.326 112.333 1.00 72.85 O
ATOM 5 O5' A A 575 -12.113 89.565 112.490 1.00 71.76 O
ATOM 6 C5' A A 575 -11.924 89.551 111.072 1.00 73.58 C
ATOM 7 C4' A A 575 -10.488 89.242 110.736 1.00 74.60 C
ATOM 8 O4' A A 575 -9.629 90.311 111.224 1.00 74.93 O
ATOM 9 C3' A A 575 -9.931 87.953 111.318 1.00 74.09 C
ATOM 10 O3' A A 575 -9.038 87.409 110.370 1.00 74.52 O
ATOM 11 C2' A A 575 -9.181 88.436 112.556 1.00 74.42 C
ATOM 12 O2' A A 575 -8.111 87.593 112.925 1.00 74.29 O
ATOM 13 C1' A A 575 -8.635 89.771 112.070 1.00 74.43 C
ATOM 14 N9 A A 575 -8.355 90.734 113.135 1.00 74.63 N
ATOM 15 C8 A A 575 -9.238 91.493 113.870 1.00 74.70 C
ATOM 16 N7 A A 575 -8.656 92.304 114.722 1.00 74.75 N
ATOM 17 C5 A A 575 -7.300 92.055 114.544 1.00 75.41 C
ATOM 18 C6 A A 575 -6.147 92.601 115.143 1.00 74.87 C
ATOM 19 N6 A A 575 -6.174 93.560 116.071 1.00 74.81 N
ATOM 20 N1 A A 575 -4.947 92.124 114.744 1.00 74.72 N
ATOM 21 C2 A A 575 -4.916 91.171 113.803 1.00 74.43 C
ATOM 22 N3 A A 575 -5.923 90.586 113.161 1.00 74.38 N
ATOM 23 C4 A A 575 -7.103 91.079 113.582 1.00 75.12 C
ATOM 24 P G A 576 -9.362 85.987 109.710 1.00 76.33 P
ATOM 25 OP1 G A 576 -10.837 85.855 109.693 1.00 76.74 O
ATOM 26 OP2 G A 576 -8.541 84.966 110.410 1.00 76.05 O
ATOM 27 O5' G A 576 -8.854 86.135 108.204 1.00 76.09 O
TER
ATOM 1 O3' A B 557 -2.300 95.864 117.360 1.00 61.27 O
ATOM 2 P C B 558 -3.218 95.575 118.640 1.00 62.96 P
ATOM 3 OP1 C B 558 -2.323 95.220 119.771 1.00 62.71 O
ATOM 4 OP2 C B 558 -4.287 94.629 118.224 1.00 61.90 O
ATOM 5 O5' C B 558 -3.838 97.003 118.964 1.00 62.40 O
ATOM 6 C5' C B 558 -2.976 98.131 119.150 1.00 66.03 C
ATOM 7 C4' C B 558 -3.786 99.364 119.422 1.00 69.96 C
ATOM 8 O4' C B 558 -4.595 99.679 118.261 1.00 71.23 O
ATOM 9 C3' C B 558 -4.789 99.219 120.546 1.00 72.89 C
ATOM 10 O3' C B 558 -4.167 99.385 121.812 1.00 77.28 O
ATOM 11 C2' C B 558 -5.804 100.299 120.201 1.00 72.58 C
ATOM 12 O2' C B 558 -5.345 101.597 120.524 1.00 72.21 O
ATOM 13 C1' C B 558 -5.861 100.163 118.678 1.00 71.50 C
ATOM 14 N1 C B 558 -6.889 99.215 118.203 1.00 71.96 N
ATOM 15 C2 C B 558 -8.208 99.668 118.019 1.00 72.73 C
ATOM 16 O2 C B 558 -8.487 100.857 118.278 1.00 73.94 O
ATOM 17 N3 C B 558 -9.146 98.795 117.567 1.00 71.74 N
ATOM 18 C4 C B 558 -8.811 97.527 117.310 1.00 70.24 C
ATOM 19 N4 C B 558 -9.763 96.703 116.867 1.00 69.78 N
ATOM 20 C5 C B 558 -7.485 97.045 117.495 1.00 70.07 C
ATOM 21 C6 C B 558 -6.567 97.911 117.938 1.00 70.70 C
ATOM 22 P C B 559 -4.525 98.373 123.008 1.00 80.91 P
ATOM 23 OP1 C B 559 -3.736 98.801 124.195 1.00 80.19 O
ATOM 24 OP2 C B 559 -4.404 96.969 122.513 1.00 79.43 O
ATOM 25 O5' C B 559 -6.066 98.672 123.285 1.00 80.52 O
TER
Atoms:
OP1: (-12.669,91.854,113.349)
OP2: (-14.461,90.326,112.333)
C3': (-9.931,87.953,111.318)
C1': (-8.635,89.771,112.070)
C5': (-11.924,89.551,111.072)
O4': (-9.629,90.311,111.224)
C8: (-9.238,91.493,113.870)
O2': (-8.111,87.593,112.925)
C6: (-6.147,92.601,115.143)
C5: (-7.300,92.055,114.544)
C4: (-7.103,91.079,113.582)
P: (-13.226,90.495,113.137)
C4': (-10.488,89.242,110.736)
C2': (-9.181,88.436,112.556)
C2: (-4.916,91.171,113.803)
N1: (-4.947,92.124,114.744)
N3: (-5.923,90.586,113.161)
N6: (-6.174,93.560,116.071)
N7: (-8.656,92.304,114.722)
N9: (-8.355,90.734,113.135)
O5': (-12.113,89.565,112.490)
O3': (-9.038,87.409,110.370)
OP2: (-14.461,90.326,112.333)
C3': (-9.931,87.953,111.318)
C1': (-8.635,89.771,112.070)
C5': (-11.924,89.551,111.072)
O4': (-9.629,90.311,111.224)
C8: (-9.238,91.493,113.870)
O2': (-8.111,87.593,112.925)
C6: (-6.147,92.601,115.143)
C5: (-7.300,92.055,114.544)
C4: (-7.103,91.079,113.582)
P: (-13.226,90.495,113.137)
C4': (-10.488,89.242,110.736)
C2': (-9.181,88.436,112.556)
C2: (-4.916,91.171,113.803)
N1: (-4.947,92.124,114.744)
N3: (-5.923,90.586,113.161)
N6: (-6.174,93.560,116.071)
N7: (-8.656,92.304,114.722)
N9: (-8.355,90.734,113.135)
O5': (-12.113,89.565,112.490)
O3': (-9.038,87.409,110.370)
C2: (-8.208,99.668,118.019)
OP1: (-2.323,95.220,119.771)
OP2: (-4.287,94.629,118.224)
C4: (-8.811,97.527,117.310)
O5': (-3.838,97.003,118.964)
C3': (-4.789,99.219,120.546)
C1': (-5.861,100.163,118.678)
O4': (-4.595,99.679,118.261)
C5': (-2.976,98.131,119.150)
P: (-3.218,95.575,118.640)
O2: (-8.487,100.857,118.278)
C4': (-3.786,99.364,119.422)
C2': (-5.804,100.299,120.201)
O2': (-5.345,101.597,120.524)
N1: (-6.889,99.215,118.203)
N3: (-9.146,98.795,117.567)
N4: (-9.763,96.703,116.867)
C6: (-6.567,97.911,117.938)
C5: (-7.485,97.045,117.495)
O3': (-4.167,99.385,121.812)
OP1: (-2.323,95.220,119.771)
OP2: (-4.287,94.629,118.224)
C4: (-8.811,97.527,117.310)
O5': (-3.838,97.003,118.964)
C3': (-4.789,99.219,120.546)
C1': (-5.861,100.163,118.678)
O4': (-4.595,99.679,118.261)
C5': (-2.976,98.131,119.150)
P: (-3.218,95.575,118.640)
O2: (-8.487,100.857,118.278)
C4': (-3.786,99.364,119.422)
C2': (-5.804,100.299,120.201)
O2': (-5.345,101.597,120.524)
N1: (-6.889,99.215,118.203)
N3: (-9.146,98.795,117.567)
N4: (-9.763,96.703,116.867)
C6: (-6.567,97.911,117.938)
C5: (-7.485,97.045,117.495)
O3': (-4.167,99.385,121.812)
Image (generated by PyMOL):