Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0575:0558
Extra
PDB:
ATOM 1 O3' C A 574 -13.448 89.897 114.713 1.00 68.23 O
ATOM 2 P A A 575 -13.183 90.467 113.236 1.00 69.41 P
ATOM 3 OP1 A A 575 -12.610 91.835 113.366 1.00 68.76 O
ATOM 4 OP2 A A 575 -14.426 90.263 112.448 1.00 69.77 O
ATOM 5 O5' A A 575 -12.082 89.487 112.635 1.00 67.05 O
ATOM 6 C5' A A 575 -11.914 89.379 111.218 1.00 66.73 C
ATOM 7 C4' A A 575 -10.469 89.118 110.870 1.00 66.27 C
ATOM 8 O4' A A 575 -9.648 90.233 111.318 1.00 66.70 O
ATOM 9 C3' A A 575 -9.843 87.865 111.463 1.00 65.63 C
ATOM 10 O3' A A 575 -8.972 87.315 110.493 1.00 65.95 O
ATOM 11 C2' A A 575 -9.066 88.404 112.661 1.00 64.96 C
ATOM 12 O2' A A 575 -7.950 87.613 113.008 1.00 64.81 O
ATOM 13 C1' A A 575 -8.597 89.752 112.131 1.00 64.78 C
ATOM 14 N9 A A 575 -8.317 90.741 113.172 1.00 63.83 N
ATOM 15 C8 A A 575 -9.205 91.525 113.871 1.00 63.74 C
ATOM 16 N7 A A 575 -8.633 92.342 114.723 1.00 63.48 N
ATOM 17 C5 A A 575 -7.277 92.074 114.582 1.00 62.86 C
ATOM 18 C6 A A 575 -6.133 92.612 115.204 1.00 61.57 C
ATOM 19 N6 A A 575 -6.173 93.577 116.125 1.00 60.84 N
ATOM 20 N1 A A 575 -4.931 92.118 114.838 1.00 60.73 N
ATOM 21 C2 A A 575 -4.887 91.157 113.910 1.00 60.45 C
ATOM 22 N3 A A 575 -5.885 90.575 113.252 1.00 61.51 N
ATOM 23 C4 A A 575 -7.069 91.084 113.638 1.00 62.88 C
ATOM 24 P G A 576 -9.344 85.916 109.805 1.00 68.99 P
ATOM 25 OP1 G A 576 -10.817 85.766 109.883 1.00 70.99 O
ATOM 26 OP2 G A 576 -8.466 84.870 110.394 1.00 68.05 O
ATOM 27 O5' G A 576 -8.984 86.128 108.264 1.00 68.73 O
TER
ATOM 1 O3' A B 557 -2.323 95.780 117.377 1.00 60.76 O
ATOM 2 P C B 558 -3.228 95.509 118.674 1.00 62.27 P
ATOM 3 OP1 C B 558 -2.307 95.157 119.786 1.00 62.58 O
ATOM 4 OP2 C B 558 -4.314 94.566 118.297 1.00 60.13 O
ATOM 5 O5' C B 558 -3.840 96.942 118.996 1.00 61.24 O
ATOM 6 C5' C B 558 -2.971 98.045 119.287 1.00 64.62 C
ATOM 7 C4' C B 558 -3.773 99.293 119.543 1.00 68.28 C
ATOM 8 O4' C B 558 -4.551 99.611 118.359 1.00 68.85 O
ATOM 9 C3' C B 558 -4.813 99.190 120.643 1.00 70.09 C
ATOM 10 O3' C B 558 -4.246 99.346 121.938 1.00 73.20 O
ATOM 11 C2' C B 558 -5.773 100.306 120.263 1.00 69.40 C
ATOM 12 O2' C B 558 -5.265 101.587 120.582 1.00 68.72 O
ATOM 13 C1' C B 558 -5.808 100.145 118.742 1.00 68.23 C
ATOM 14 N1 C B 558 -6.856 99.209 118.292 1.00 68.90 N
ATOM 15 C2 C B 558 -8.157 99.692 118.086 1.00 70.01 C
ATOM 16 O2 C B 558 -8.396 100.900 118.291 1.00 71.71 O
ATOM 17 N3 C B 558 -9.121 98.830 117.671 1.00 69.02 N
ATOM 18 C4 C B 558 -8.826 97.542 117.470 1.00 67.87 C
ATOM 19 N4 C B 558 -9.806 96.729 117.072 1.00 66.76 N
ATOM 20 C5 C B 558 -7.514 97.030 117.672 1.00 68.05 C
ATOM 21 C6 C B 558 -6.570 97.887 118.078 1.00 68.20 C
ATOM 22 P C B 559 -4.702 98.360 123.125 1.00 75.94 P
ATOM 23 OP1 C B 559 -4.028 98.811 124.374 1.00 75.54 O
ATOM 24 OP2 C B 559 -4.532 96.952 122.665 1.00 73.21 O
ATOM 25 O5' C B 559 -6.261 98.645 123.275 1.00 75.70 O
TER
ATOM 2 P A A 575 -13.183 90.467 113.236 1.00 69.41 P
ATOM 3 OP1 A A 575 -12.610 91.835 113.366 1.00 68.76 O
ATOM 4 OP2 A A 575 -14.426 90.263 112.448 1.00 69.77 O
ATOM 5 O5' A A 575 -12.082 89.487 112.635 1.00 67.05 O
ATOM 6 C5' A A 575 -11.914 89.379 111.218 1.00 66.73 C
ATOM 7 C4' A A 575 -10.469 89.118 110.870 1.00 66.27 C
ATOM 8 O4' A A 575 -9.648 90.233 111.318 1.00 66.70 O
ATOM 9 C3' A A 575 -9.843 87.865 111.463 1.00 65.63 C
ATOM 10 O3' A A 575 -8.972 87.315 110.493 1.00 65.95 O
ATOM 11 C2' A A 575 -9.066 88.404 112.661 1.00 64.96 C
ATOM 12 O2' A A 575 -7.950 87.613 113.008 1.00 64.81 O
ATOM 13 C1' A A 575 -8.597 89.752 112.131 1.00 64.78 C
ATOM 14 N9 A A 575 -8.317 90.741 113.172 1.00 63.83 N
ATOM 15 C8 A A 575 -9.205 91.525 113.871 1.00 63.74 C
ATOM 16 N7 A A 575 -8.633 92.342 114.723 1.00 63.48 N
ATOM 17 C5 A A 575 -7.277 92.074 114.582 1.00 62.86 C
ATOM 18 C6 A A 575 -6.133 92.612 115.204 1.00 61.57 C
ATOM 19 N6 A A 575 -6.173 93.577 116.125 1.00 60.84 N
ATOM 20 N1 A A 575 -4.931 92.118 114.838 1.00 60.73 N
ATOM 21 C2 A A 575 -4.887 91.157 113.910 1.00 60.45 C
ATOM 22 N3 A A 575 -5.885 90.575 113.252 1.00 61.51 N
ATOM 23 C4 A A 575 -7.069 91.084 113.638 1.00 62.88 C
ATOM 24 P G A 576 -9.344 85.916 109.805 1.00 68.99 P
ATOM 25 OP1 G A 576 -10.817 85.766 109.883 1.00 70.99 O
ATOM 26 OP2 G A 576 -8.466 84.870 110.394 1.00 68.05 O
ATOM 27 O5' G A 576 -8.984 86.128 108.264 1.00 68.73 O
TER
ATOM 1 O3' A B 557 -2.323 95.780 117.377 1.00 60.76 O
ATOM 2 P C B 558 -3.228 95.509 118.674 1.00 62.27 P
ATOM 3 OP1 C B 558 -2.307 95.157 119.786 1.00 62.58 O
ATOM 4 OP2 C B 558 -4.314 94.566 118.297 1.00 60.13 O
ATOM 5 O5' C B 558 -3.840 96.942 118.996 1.00 61.24 O
ATOM 6 C5' C B 558 -2.971 98.045 119.287 1.00 64.62 C
ATOM 7 C4' C B 558 -3.773 99.293 119.543 1.00 68.28 C
ATOM 8 O4' C B 558 -4.551 99.611 118.359 1.00 68.85 O
ATOM 9 C3' C B 558 -4.813 99.190 120.643 1.00 70.09 C
ATOM 10 O3' C B 558 -4.246 99.346 121.938 1.00 73.20 O
ATOM 11 C2' C B 558 -5.773 100.306 120.263 1.00 69.40 C
ATOM 12 O2' C B 558 -5.265 101.587 120.582 1.00 68.72 O
ATOM 13 C1' C B 558 -5.808 100.145 118.742 1.00 68.23 C
ATOM 14 N1 C B 558 -6.856 99.209 118.292 1.00 68.90 N
ATOM 15 C2 C B 558 -8.157 99.692 118.086 1.00 70.01 C
ATOM 16 O2 C B 558 -8.396 100.900 118.291 1.00 71.71 O
ATOM 17 N3 C B 558 -9.121 98.830 117.671 1.00 69.02 N
ATOM 18 C4 C B 558 -8.826 97.542 117.470 1.00 67.87 C
ATOM 19 N4 C B 558 -9.806 96.729 117.072 1.00 66.76 N
ATOM 20 C5 C B 558 -7.514 97.030 117.672 1.00 68.05 C
ATOM 21 C6 C B 558 -6.570 97.887 118.078 1.00 68.20 C
ATOM 22 P C B 559 -4.702 98.360 123.125 1.00 75.94 P
ATOM 23 OP1 C B 559 -4.028 98.811 124.374 1.00 75.54 O
ATOM 24 OP2 C B 559 -4.532 96.952 122.665 1.00 73.21 O
ATOM 25 O5' C B 559 -6.261 98.645 123.275 1.00 75.70 O
TER
Atoms:
OP1: (-12.610,91.835,113.366)
OP2: (-14.426,90.263,112.448)
C3': (-9.843,87.865,111.463)
C1': (-8.597,89.752,112.131)
C5': (-11.914,89.379,111.218)
O4': (-9.648,90.233,111.318)
C8: (-9.205,91.525,113.871)
O2': (-7.950,87.613,113.008)
C6: (-6.133,92.612,115.204)
C5: (-7.277,92.074,114.582)
C4: (-7.069,91.084,113.638)
P: (-13.183,90.467,113.236)
C4': (-10.469,89.118,110.870)
C2': (-9.066,88.404,112.661)
C2: (-4.887,91.157,113.910)
N1: (-4.931,92.118,114.838)
N3: (-5.885,90.575,113.252)
N6: (-6.173,93.577,116.125)
N7: (-8.633,92.342,114.723)
N9: (-8.317,90.741,113.172)
O5': (-12.082,89.487,112.635)
O3': (-8.972,87.315,110.493)
OP2: (-14.426,90.263,112.448)
C3': (-9.843,87.865,111.463)
C1': (-8.597,89.752,112.131)
C5': (-11.914,89.379,111.218)
O4': (-9.648,90.233,111.318)
C8: (-9.205,91.525,113.871)
O2': (-7.950,87.613,113.008)
C6: (-6.133,92.612,115.204)
C5: (-7.277,92.074,114.582)
C4: (-7.069,91.084,113.638)
P: (-13.183,90.467,113.236)
C4': (-10.469,89.118,110.870)
C2': (-9.066,88.404,112.661)
C2: (-4.887,91.157,113.910)
N1: (-4.931,92.118,114.838)
N3: (-5.885,90.575,113.252)
N6: (-6.173,93.577,116.125)
N7: (-8.633,92.342,114.723)
N9: (-8.317,90.741,113.172)
O5': (-12.082,89.487,112.635)
O3': (-8.972,87.315,110.493)
C2: (-8.157,99.692,118.086)
OP1: (-2.307,95.157,119.786)
OP2: (-4.314,94.566,118.297)
C4: (-8.826,97.542,117.470)
O5': (-3.840,96.942,118.996)
C3': (-4.813,99.190,120.643)
C1': (-5.808,100.145,118.742)
O4': (-4.551,99.611,118.359)
C5': (-2.971,98.045,119.287)
P: (-3.228,95.509,118.674)
O2: (-8.396,100.900,118.291)
C4': (-3.773,99.293,119.543)
C2': (-5.773,100.306,120.263)
O2': (-5.265,101.587,120.582)
N1: (-6.856,99.209,118.292)
N3: (-9.121,98.830,117.671)
N4: (-9.806,96.729,117.072)
C6: (-6.570,97.887,118.078)
C5: (-7.514,97.030,117.672)
O3': (-4.246,99.346,121.938)
OP1: (-2.307,95.157,119.786)
OP2: (-4.314,94.566,118.297)
C4: (-8.826,97.542,117.470)
O5': (-3.840,96.942,118.996)
C3': (-4.813,99.190,120.643)
C1': (-5.808,100.145,118.742)
O4': (-4.551,99.611,118.359)
C5': (-2.971,98.045,119.287)
P: (-3.228,95.509,118.674)
O2: (-8.396,100.900,118.291)
C4': (-3.773,99.293,119.543)
C2': (-5.773,100.306,120.263)
O2': (-5.265,101.587,120.582)
N1: (-6.856,99.209,118.292)
N3: (-9.121,98.830,117.671)
N4: (-9.806,96.729,117.072)
C6: (-6.570,97.887,118.078)
C5: (-7.514,97.030,117.672)
O3': (-4.246,99.346,121.938)
Image (generated by PyMOL):