Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0345:0282
Extra
PDB:
ATOM 1 O3' C A 344 53.509 120.951 15.496 1.00 82.47 O
ATOM 2 P A A 345 54.531 120.481 14.342 1.00 84.50 P
ATOM 3 OP1 A A 345 53.742 120.183 13.111 1.00 84.55 O
ATOM 4 OP2 A A 345 55.435 119.443 14.912 1.00 83.34 O
ATOM 5 O5' A A 345 55.409 121.769 14.047 1.00 84.33 O
ATOM 6 C5' A A 345 56.471 121.731 13.083 1.00 85.31 C
ATOM 7 C4' A A 345 56.504 123.022 12.315 1.00 86.05 C
ATOM 8 O4' A A 345 55.454 123.023 11.304 1.00 86.79 O
ATOM 9 C3' A A 345 56.270 124.261 13.172 1.00 86.61 C
ATOM 10 O3' A A 345 57.053 125.323 12.662 1.00 88.44 O
ATOM 11 C2' A A 345 54.783 124.531 12.953 1.00 86.72 C
ATOM 12 O2' A A 345 54.394 125.868 13.195 1.00 87.09 O
ATOM 13 C1' A A 345 54.640 124.166 11.478 1.00 86.37 C
ATOM 14 N9 A A 345 53.277 123.862 11.037 1.00 85.88 N
ATOM 15 C8 A A 345 52.512 122.742 11.277 1.00 85.40 C
ATOM 16 N7 A A 345 51.311 122.798 10.750 1.00 84.88 N
ATOM 17 C5 A A 345 51.279 124.036 10.116 1.00 85.84 C
ATOM 18 C6 A A 345 50.273 124.709 9.377 1.00 85.07 C
ATOM 19 N6 A A 345 49.054 124.209 9.150 1.00 84.40 N
ATOM 20 N1 A A 345 50.570 125.931 8.878 1.00 84.75 N
ATOM 21 C2 A A 345 51.793 126.440 9.108 1.00 85.63 C
ATOM 22 N3 A A 345 52.817 125.912 9.787 1.00 85.89 N
ATOM 23 C4 A A 345 52.490 124.697 10.274 1.00 86.41 C
ATOM 24 P G A 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 25 OP1 G A 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 26 OP2 G A 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 27 O5' G A 346 59.488 125.693 12.155 1.00 92.04 O
TER
ATOM 1 O3' A B 281 46.694 126.747 5.809 1.00 93.32 O
ATOM 2 P C B 282 45.785 126.662 7.131 1.00 94.70 P
ATOM 3 OP1 C B 282 45.019 127.935 7.249 1.00 94.04 O
ATOM 4 OP2 C B 282 46.662 126.221 8.254 1.00 94.76 O
ATOM 5 O5' C B 282 44.755 125.489 6.816 1.00 94.73 O
ATOM 6 C5' C B 282 43.934 125.523 5.638 1.00 94.88 C
ATOM 7 C4' C B 282 43.212 124.209 5.472 1.00 95.89 C
ATOM 8 O4' C B 282 44.182 123.142 5.304 1.00 95.52 O
ATOM 9 C3' C B 282 42.381 123.766 6.665 1.00 96.40 C
ATOM 10 O3' C B 282 41.097 124.373 6.664 1.00 98.66 O
ATOM 11 C2' C B 282 42.290 122.262 6.460 1.00 95.89 C
ATOM 12 O2' C B 282 41.295 121.898 5.523 1.00 95.43 O
ATOM 13 C1' C B 282 43.682 121.955 5.900 1.00 95.97 C
ATOM 14 N1 C B 282 44.636 121.506 6.929 1.00 96.15 N
ATOM 15 C2 C B 282 44.642 120.148 7.294 1.00 96.80 C
ATOM 16 O2 C B 282 43.844 119.367 6.740 1.00 96.70 O
ATOM 17 N3 C B 282 45.516 119.722 8.241 1.00 96.52 N
ATOM 18 C4 C B 282 46.355 120.589 8.814 1.00 95.14 C
ATOM 19 N4 C B 282 47.194 120.124 9.740 1.00 93.02 N
ATOM 20 C5 C B 282 46.370 121.973 8.460 1.00 95.89 C
ATOM 21 C6 C B 282 45.502 122.384 7.523 1.00 95.87 C
ATOM 22 P C B 283 40.406 124.771 8.058 1.00100.78 P
ATOM 23 OP1 C B 283 39.022 125.225 7.746 1.00101.05 O
ATOM 24 OP2 C B 283 41.332 125.678 8.798 1.00100.91 O
ATOM 25 O5' C B 283 40.319 123.392 8.854 1.00 99.40 O
TER
ATOM 2 P A A 345 54.531 120.481 14.342 1.00 84.50 P
ATOM 3 OP1 A A 345 53.742 120.183 13.111 1.00 84.55 O
ATOM 4 OP2 A A 345 55.435 119.443 14.912 1.00 83.34 O
ATOM 5 O5' A A 345 55.409 121.769 14.047 1.00 84.33 O
ATOM 6 C5' A A 345 56.471 121.731 13.083 1.00 85.31 C
ATOM 7 C4' A A 345 56.504 123.022 12.315 1.00 86.05 C
ATOM 8 O4' A A 345 55.454 123.023 11.304 1.00 86.79 O
ATOM 9 C3' A A 345 56.270 124.261 13.172 1.00 86.61 C
ATOM 10 O3' A A 345 57.053 125.323 12.662 1.00 88.44 O
ATOM 11 C2' A A 345 54.783 124.531 12.953 1.00 86.72 C
ATOM 12 O2' A A 345 54.394 125.868 13.195 1.00 87.09 O
ATOM 13 C1' A A 345 54.640 124.166 11.478 1.00 86.37 C
ATOM 14 N9 A A 345 53.277 123.862 11.037 1.00 85.88 N
ATOM 15 C8 A A 345 52.512 122.742 11.277 1.00 85.40 C
ATOM 16 N7 A A 345 51.311 122.798 10.750 1.00 84.88 N
ATOM 17 C5 A A 345 51.279 124.036 10.116 1.00 85.84 C
ATOM 18 C6 A A 345 50.273 124.709 9.377 1.00 85.07 C
ATOM 19 N6 A A 345 49.054 124.209 9.150 1.00 84.40 N
ATOM 20 N1 A A 345 50.570 125.931 8.878 1.00 84.75 N
ATOM 21 C2 A A 345 51.793 126.440 9.108 1.00 85.63 C
ATOM 22 N3 A A 345 52.817 125.912 9.787 1.00 85.89 N
ATOM 23 C4 A A 345 52.490 124.697 10.274 1.00 86.41 C
ATOM 24 P G A 346 58.449 125.686 13.365 1.00 90.36 P
ATOM 25 OP1 G A 346 58.807 124.564 14.264 1.00 91.34 O
ATOM 26 OP2 G A 346 58.342 127.063 13.913 1.00 91.13 O
ATOM 27 O5' G A 346 59.488 125.693 12.155 1.00 92.04 O
TER
ATOM 1 O3' A B 281 46.694 126.747 5.809 1.00 93.32 O
ATOM 2 P C B 282 45.785 126.662 7.131 1.00 94.70 P
ATOM 3 OP1 C B 282 45.019 127.935 7.249 1.00 94.04 O
ATOM 4 OP2 C B 282 46.662 126.221 8.254 1.00 94.76 O
ATOM 5 O5' C B 282 44.755 125.489 6.816 1.00 94.73 O
ATOM 6 C5' C B 282 43.934 125.523 5.638 1.00 94.88 C
ATOM 7 C4' C B 282 43.212 124.209 5.472 1.00 95.89 C
ATOM 8 O4' C B 282 44.182 123.142 5.304 1.00 95.52 O
ATOM 9 C3' C B 282 42.381 123.766 6.665 1.00 96.40 C
ATOM 10 O3' C B 282 41.097 124.373 6.664 1.00 98.66 O
ATOM 11 C2' C B 282 42.290 122.262 6.460 1.00 95.89 C
ATOM 12 O2' C B 282 41.295 121.898 5.523 1.00 95.43 O
ATOM 13 C1' C B 282 43.682 121.955 5.900 1.00 95.97 C
ATOM 14 N1 C B 282 44.636 121.506 6.929 1.00 96.15 N
ATOM 15 C2 C B 282 44.642 120.148 7.294 1.00 96.80 C
ATOM 16 O2 C B 282 43.844 119.367 6.740 1.00 96.70 O
ATOM 17 N3 C B 282 45.516 119.722 8.241 1.00 96.52 N
ATOM 18 C4 C B 282 46.355 120.589 8.814 1.00 95.14 C
ATOM 19 N4 C B 282 47.194 120.124 9.740 1.00 93.02 N
ATOM 20 C5 C B 282 46.370 121.973 8.460 1.00 95.89 C
ATOM 21 C6 C B 282 45.502 122.384 7.523 1.00 95.87 C
ATOM 22 P C B 283 40.406 124.771 8.058 1.00100.78 P
ATOM 23 OP1 C B 283 39.022 125.225 7.746 1.00101.05 O
ATOM 24 OP2 C B 283 41.332 125.678 8.798 1.00100.91 O
ATOM 25 O5' C B 283 40.319 123.392 8.854 1.00 99.40 O
TER
Atoms:
OP1: (53.742,120.183,13.111)
OP2: (55.435,119.443,14.912)
C3': (56.270,124.261,13.172)
C1': (54.640,124.166,11.478)
C5': (56.471,121.731,13.083)
O4': (55.454,123.023,11.304)
C8: (52.512,122.742,11.277)
O2': (54.394,125.868,13.195)
C6: (50.273,124.709,9.377)
C5: (51.279,124.036,10.116)
C4: (52.490,124.697,10.274)
P: (54.531,120.481,14.342)
C4': (56.504,123.022,12.315)
C2': (54.783,124.531,12.953)
C2: (51.793,126.440,9.108)
N1: (50.570,125.931,8.878)
N3: (52.817,125.912,9.787)
N6: (49.054,124.209,9.150)
N7: (51.311,122.798,10.750)
N9: (53.277,123.862,11.037)
O5': (55.409,121.769,14.047)
O3': (57.053,125.323,12.662)
OP2: (55.435,119.443,14.912)
C3': (56.270,124.261,13.172)
C1': (54.640,124.166,11.478)
C5': (56.471,121.731,13.083)
O4': (55.454,123.023,11.304)
C8: (52.512,122.742,11.277)
O2': (54.394,125.868,13.195)
C6: (50.273,124.709,9.377)
C5: (51.279,124.036,10.116)
C4: (52.490,124.697,10.274)
P: (54.531,120.481,14.342)
C4': (56.504,123.022,12.315)
C2': (54.783,124.531,12.953)
C2: (51.793,126.440,9.108)
N1: (50.570,125.931,8.878)
N3: (52.817,125.912,9.787)
N6: (49.054,124.209,9.150)
N7: (51.311,122.798,10.750)
N9: (53.277,123.862,11.037)
O5': (55.409,121.769,14.047)
O3': (57.053,125.323,12.662)
C2: (44.642,120.148,7.294)
OP1: (45.019,127.935,7.249)
OP2: (46.662,126.221,8.254)
C4: (46.355,120.589,8.814)
O5': (44.755,125.489,6.816)
C3': (42.381,123.766,6.665)
C1': (43.682,121.955,5.900)
O4': (44.182,123.142,5.304)
C5': (43.934,125.523,5.638)
P: (45.785,126.662,7.131)
O2: (43.844,119.367,6.740)
C4': (43.212,124.209,5.472)
C2': (42.290,122.262,6.460)
O2': (41.295,121.898,5.523)
N1: (44.636,121.506,6.929)
N3: (45.516,119.722,8.241)
N4: (47.194,120.124,9.740)
C6: (45.502,122.384,7.523)
C5: (46.370,121.973,8.460)
O3': (41.097,124.373,6.664)
OP1: (45.019,127.935,7.249)
OP2: (46.662,126.221,8.254)
C4: (46.355,120.589,8.814)
O5': (44.755,125.489,6.816)
C3': (42.381,123.766,6.665)
C1': (43.682,121.955,5.900)
O4': (44.182,123.142,5.304)
C5': (43.934,125.523,5.638)
P: (45.785,126.662,7.131)
O2: (43.844,119.367,6.740)
C4': (43.212,124.209,5.472)
C2': (42.290,122.262,6.460)
O2': (41.295,121.898,5.523)
N1: (44.636,121.506,6.929)
N3: (45.516,119.722,8.241)
N4: (47.194,120.124,9.740)
C6: (45.502,122.384,7.523)
C5: (46.370,121.973,8.460)
O3': (41.097,124.373,6.664)
Image (generated by PyMOL):