Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0682:0719
Extra
PDB:
ATOM 1 O3' A A 681 66.543 72.875 39.777 1.00 45.05 O
ATOM 2 P A A 682 65.520 72.319 38.668 1.00 45.96 P
ATOM 3 OP1 A A 682 65.623 73.252 37.520 1.00 46.93 O
ATOM 4 OP2 A A 682 64.198 72.078 39.292 1.00 41.22 O
ATOM 5 O5' A A 682 66.145 70.918 38.230 1.00 45.66 O
ATOM 6 C5' A A 682 67.383 70.855 37.491 1.00 46.32 C
ATOM 7 C4' A A 682 67.876 69.426 37.400 1.00 48.59 C
ATOM 8 O4' A A 682 68.146 68.928 38.739 1.00 49.73 O
ATOM 9 C3' A A 682 66.911 68.407 36.806 1.00 48.78 C
ATOM 10 O3' A A 682 66.954 68.380 35.380 1.00 48.58 O
ATOM 11 C2' A A 682 67.435 67.106 37.398 1.00 48.98 C
ATOM 12 O2' A A 682 68.584 66.632 36.729 1.00 49.60 O
ATOM 13 C1' A A 682 67.812 67.552 38.813 1.00 48.92 C
ATOM 14 N9 A A 682 66.683 67.408 39.729 1.00 48.48 N
ATOM 15 C8 A A 682 65.646 68.286 39.920 1.00 48.42 C
ATOM 16 N7 A A 682 64.747 67.866 40.772 1.00 49.45 N
ATOM 17 C5 A A 682 65.229 66.630 41.181 1.00 49.91 C
ATOM 18 C6 A A 682 64.727 65.669 42.080 1.00 50.49 C
ATOM 19 N6 A A 682 63.573 65.806 42.743 1.00 50.68 N
ATOM 20 N1 A A 682 65.457 64.548 42.271 1.00 49.58 N
ATOM 21 C2 A A 682 66.606 64.409 41.594 1.00 49.84 C
ATOM 22 N3 A A 682 67.177 65.236 40.718 1.00 49.35 N
ATOM 23 C4 A A 682 66.429 66.342 40.556 1.00 49.37 C
ATOM 24 P C A 683 65.586 68.422 34.526 1.00 50.50 P
ATOM 25 OP1 C A 683 65.968 68.077 33.132 1.00 51.59 O
ATOM 26 OP2 C A 683 64.858 69.691 34.789 1.00 48.77 O
ATOM 27 O5' C A 683 64.688 67.245 35.122 1.00 51.09 O
TER
ATOM 1 O3' U B 718 59.216 63.681 43.902 1.00 43.08 O
ATOM 2 P C B 719 60.610 62.977 44.278 1.00 44.23 P
ATOM 3 OP1 C B 719 61.613 63.415 43.282 1.00 47.35 O
ATOM 4 OP2 C B 719 60.372 61.532 44.484 1.00 47.31 O
ATOM 5 O5' C B 719 61.004 63.609 45.684 1.00 46.17 O
ATOM 6 C5' C B 719 61.416 64.986 45.797 1.00 45.22 C
ATOM 7 C4' C B 719 61.816 65.291 47.219 1.00 44.62 C
ATOM 8 O4' C B 719 60.652 65.277 48.085 1.00 44.22 O
ATOM 9 C3' C B 719 62.751 64.274 47.843 1.00 44.49 C
ATOM 10 O3' C B 719 64.089 64.502 47.450 1.00 44.81 O
ATOM 11 C2' C B 719 62.521 64.485 49.331 1.00 45.09 C
ATOM 12 O2' C B 719 63.202 65.612 49.832 1.00 45.02 O
ATOM 13 C1' C B 719 61.017 64.766 49.359 1.00 46.28 C
ATOM 14 N1 C B 719 60.198 63.574 49.647 1.00 48.54 N
ATOM 15 C2 C B 719 59.845 63.301 50.976 1.00 48.91 C
ATOM 16 O2 C B 719 60.249 64.048 51.873 1.00 50.11 O
ATOM 17 N3 C B 719 59.077 62.228 51.248 1.00 48.62 N
ATOM 18 C4 C B 719 58.672 61.432 50.262 1.00 48.75 C
ATOM 19 N4 C B 719 57.924 60.384 50.583 1.00 49.27 N
ATOM 20 C5 C B 719 59.021 61.676 48.902 1.00 50.16 C
ATOM 21 C6 C B 719 59.779 62.746 48.642 1.00 49.24 C
ATOM 22 P U B 720 65.117 63.280 47.417 1.00 46.65 P
ATOM 23 OP1 U B 720 66.437 63.766 46.957 1.00 46.11 O
ATOM 24 OP2 U B 720 64.457 62.168 46.695 1.00 47.72 O
ATOM 25 O5' U B 720 65.266 62.890 48.950 1.00 46.57 O
TER
ATOM 2 P A A 682 65.520 72.319 38.668 1.00 45.96 P
ATOM 3 OP1 A A 682 65.623 73.252 37.520 1.00 46.93 O
ATOM 4 OP2 A A 682 64.198 72.078 39.292 1.00 41.22 O
ATOM 5 O5' A A 682 66.145 70.918 38.230 1.00 45.66 O
ATOM 6 C5' A A 682 67.383 70.855 37.491 1.00 46.32 C
ATOM 7 C4' A A 682 67.876 69.426 37.400 1.00 48.59 C
ATOM 8 O4' A A 682 68.146 68.928 38.739 1.00 49.73 O
ATOM 9 C3' A A 682 66.911 68.407 36.806 1.00 48.78 C
ATOM 10 O3' A A 682 66.954 68.380 35.380 1.00 48.58 O
ATOM 11 C2' A A 682 67.435 67.106 37.398 1.00 48.98 C
ATOM 12 O2' A A 682 68.584 66.632 36.729 1.00 49.60 O
ATOM 13 C1' A A 682 67.812 67.552 38.813 1.00 48.92 C
ATOM 14 N9 A A 682 66.683 67.408 39.729 1.00 48.48 N
ATOM 15 C8 A A 682 65.646 68.286 39.920 1.00 48.42 C
ATOM 16 N7 A A 682 64.747 67.866 40.772 1.00 49.45 N
ATOM 17 C5 A A 682 65.229 66.630 41.181 1.00 49.91 C
ATOM 18 C6 A A 682 64.727 65.669 42.080 1.00 50.49 C
ATOM 19 N6 A A 682 63.573 65.806 42.743 1.00 50.68 N
ATOM 20 N1 A A 682 65.457 64.548 42.271 1.00 49.58 N
ATOM 21 C2 A A 682 66.606 64.409 41.594 1.00 49.84 C
ATOM 22 N3 A A 682 67.177 65.236 40.718 1.00 49.35 N
ATOM 23 C4 A A 682 66.429 66.342 40.556 1.00 49.37 C
ATOM 24 P C A 683 65.586 68.422 34.526 1.00 50.50 P
ATOM 25 OP1 C A 683 65.968 68.077 33.132 1.00 51.59 O
ATOM 26 OP2 C A 683 64.858 69.691 34.789 1.00 48.77 O
ATOM 27 O5' C A 683 64.688 67.245 35.122 1.00 51.09 O
TER
ATOM 1 O3' U B 718 59.216 63.681 43.902 1.00 43.08 O
ATOM 2 P C B 719 60.610 62.977 44.278 1.00 44.23 P
ATOM 3 OP1 C B 719 61.613 63.415 43.282 1.00 47.35 O
ATOM 4 OP2 C B 719 60.372 61.532 44.484 1.00 47.31 O
ATOM 5 O5' C B 719 61.004 63.609 45.684 1.00 46.17 O
ATOM 6 C5' C B 719 61.416 64.986 45.797 1.00 45.22 C
ATOM 7 C4' C B 719 61.816 65.291 47.219 1.00 44.62 C
ATOM 8 O4' C B 719 60.652 65.277 48.085 1.00 44.22 O
ATOM 9 C3' C B 719 62.751 64.274 47.843 1.00 44.49 C
ATOM 10 O3' C B 719 64.089 64.502 47.450 1.00 44.81 O
ATOM 11 C2' C B 719 62.521 64.485 49.331 1.00 45.09 C
ATOM 12 O2' C B 719 63.202 65.612 49.832 1.00 45.02 O
ATOM 13 C1' C B 719 61.017 64.766 49.359 1.00 46.28 C
ATOM 14 N1 C B 719 60.198 63.574 49.647 1.00 48.54 N
ATOM 15 C2 C B 719 59.845 63.301 50.976 1.00 48.91 C
ATOM 16 O2 C B 719 60.249 64.048 51.873 1.00 50.11 O
ATOM 17 N3 C B 719 59.077 62.228 51.248 1.00 48.62 N
ATOM 18 C4 C B 719 58.672 61.432 50.262 1.00 48.75 C
ATOM 19 N4 C B 719 57.924 60.384 50.583 1.00 49.27 N
ATOM 20 C5 C B 719 59.021 61.676 48.902 1.00 50.16 C
ATOM 21 C6 C B 719 59.779 62.746 48.642 1.00 49.24 C
ATOM 22 P U B 720 65.117 63.280 47.417 1.00 46.65 P
ATOM 23 OP1 U B 720 66.437 63.766 46.957 1.00 46.11 O
ATOM 24 OP2 U B 720 64.457 62.168 46.695 1.00 47.72 O
ATOM 25 O5' U B 720 65.266 62.890 48.950 1.00 46.57 O
TER
Atoms:
OP1: (65.623,73.252,37.520)
OP2: (64.198,72.078,39.292)
C3': (66.911,68.407,36.806)
C1': (67.812,67.552,38.813)
C5': (67.383,70.855,37.491)
O4': (68.146,68.928,38.739)
C8: (65.646,68.286,39.920)
O2': (68.584,66.632,36.729)
C6: (64.727,65.669,42.080)
C5: (65.229,66.630,41.181)
C4: (66.429,66.342,40.556)
P: (65.520,72.319,38.668)
C4': (67.876,69.426,37.400)
C2': (67.435,67.106,37.398)
C2: (66.606,64.409,41.594)
N1: (65.457,64.548,42.271)
N3: (67.177,65.236,40.718)
N6: (63.573,65.806,42.743)
N7: (64.747,67.866,40.772)
N9: (66.683,67.408,39.729)
O5': (66.145,70.918,38.230)
O3': (66.954,68.380,35.380)
OP2: (64.198,72.078,39.292)
C3': (66.911,68.407,36.806)
C1': (67.812,67.552,38.813)
C5': (67.383,70.855,37.491)
O4': (68.146,68.928,38.739)
C8: (65.646,68.286,39.920)
O2': (68.584,66.632,36.729)
C6: (64.727,65.669,42.080)
C5: (65.229,66.630,41.181)
C4: (66.429,66.342,40.556)
P: (65.520,72.319,38.668)
C4': (67.876,69.426,37.400)
C2': (67.435,67.106,37.398)
C2: (66.606,64.409,41.594)
N1: (65.457,64.548,42.271)
N3: (67.177,65.236,40.718)
N6: (63.573,65.806,42.743)
N7: (64.747,67.866,40.772)
N9: (66.683,67.408,39.729)
O5': (66.145,70.918,38.230)
O3': (66.954,68.380,35.380)
C2: (59.845,63.301,50.976)
OP1: (61.613,63.415,43.282)
OP2: (60.372,61.532,44.484)
C4: (58.672,61.432,50.262)
O5': (61.004,63.609,45.684)
C3': (62.751,64.274,47.843)
C1': (61.017,64.766,49.359)
O4': (60.652,65.277,48.085)
C5': (61.416,64.986,45.797)
P: (60.610,62.977,44.278)
O2: (60.249,64.048,51.873)
C4': (61.816,65.291,47.219)
C2': (62.521,64.485,49.331)
O2': (63.202,65.612,49.832)
N1: (60.198,63.574,49.647)
N3: (59.077,62.228,51.248)
N4: (57.924,60.384,50.583)
C6: (59.779,62.746,48.642)
C5: (59.021,61.676,48.902)
O3': (64.089,64.502,47.450)
OP1: (61.613,63.415,43.282)
OP2: (60.372,61.532,44.484)
C4: (58.672,61.432,50.262)
O5': (61.004,63.609,45.684)
C3': (62.751,64.274,47.843)
C1': (61.017,64.766,49.359)
O4': (60.652,65.277,48.085)
C5': (61.416,64.986,45.797)
P: (60.610,62.977,44.278)
O2: (60.249,64.048,51.873)
C4': (61.816,65.291,47.219)
C2': (62.521,64.485,49.331)
O2': (63.202,65.612,49.832)
N1: (60.198,63.574,49.647)
N3: (59.077,62.228,51.248)
N4: (57.924,60.384,50.583)
C6: (59.779,62.746,48.642)
C5: (59.021,61.676,48.902)
O3': (64.089,64.502,47.450)
Image (generated by PyMOL):