Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VON:D3:D4
Extra
PDB:
ATOM 1 O3' A A 2 -17.952 -30.209 -43.729 1.00 36.68 O
ATOM 2 P A A 3 -16.363 -30.007 -43.824 1.00 34.21 P
ATOM 3 OP1 A A 3 -15.766 -30.777 -42.704 1.00 33.13 O
ATOM 4 OP2 A A 3 -15.892 -30.243 -45.211 1.00 37.43 O
ATOM 5 O5' A A 3 -16.244 -28.462 -43.509 1.00 29.82 O
ATOM 6 C5' A A 3 -16.955 -27.511 -44.307 1.00 24.07 C
ATOM 7 C4' A A 3 -16.790 -26.139 -43.727 1.00 23.85 C
ATOM 8 O4' A A 3 -17.852 -25.848 -42.778 1.00 22.99 O
ATOM 9 C3' A A 3 -15.467 -25.929 -42.999 1.00 23.34 C
ATOM 10 O3' A A 3 -14.910 -24.672 -43.349 1.00 22.28 O
ATOM 11 C2' A A 3 -15.879 -25.971 -41.530 1.00 23.28 C
ATOM 12 O2' A A 3 -15.028 -25.239 -40.674 1.00 26.95 O
ATOM 13 C1' A A 3 -17.281 -25.362 -41.585 1.00 23.32 C
ATOM 14 N9 A A 3 -18.148 -25.706 -40.455 1.00 20.99 N
ATOM 15 C8 A A 3 -18.287 -26.916 -39.818 1.00 20.59 C
ATOM 16 N7 A A 3 -19.095 -26.879 -38.786 1.00 21.02 N
ATOM 17 C5 A A 3 -19.525 -25.560 -38.743 1.00 20.12 C
ATOM 18 C6 A A 3 -20.385 -24.869 -37.863 1.00 22.15 C
ATOM 19 N6 A A 3 -20.960 -25.430 -36.793 1.00 23.58 N
ATOM 20 N1 A A 3 -20.628 -23.563 -38.116 1.00 21.49 N
ATOM 21 C2 A A 3 -20.028 -22.994 -39.171 1.00 20.87 C
ATOM 22 N3 A A 3 -19.186 -23.531 -40.055 1.00 22.58 N
ATOM 23 C4 A A 3 -18.972 -24.832 -39.781 1.00 21.45 C
ATOM 24 P U A 4 -13.551 -24.622 -44.205 1.00 22.61 P
ATOM 25 OP1 U A 4 -13.648 -25.615 -45.307 1.00 22.99 O
ATOM 26 OP2 U A 4 -13.261 -23.196 -44.522 1.00 23.23 O
ATOM 27 O5' U A 4 -12.434 -25.150 -43.200 1.00 21.69 O
TER
ATOM 1 O3' A B 3 -14.910 -24.672 -43.349 1.00 22.28 O
ATOM 2 P U B 4 -13.551 -24.622 -44.205 1.00 22.61 P
ATOM 3 OP1 U B 4 -13.648 -25.615 -45.307 1.00 22.99 O
ATOM 4 OP2 U B 4 -13.261 -23.196 -44.522 1.00 23.23 O
ATOM 5 O5' U B 4 -12.434 -25.150 -43.200 1.00 21.69 O
ATOM 6 C5' U B 4 -12.007 -24.340 -42.094 1.00 19.65 C
ATOM 7 C4' U B 4 -10.776 -24.932 -41.455 1.00 18.72 C
ATOM 8 O4' U B 4 -11.144 -26.112 -40.688 1.00 17.23 O
ATOM 9 C3' U B 4 -9.637 -25.337 -42.393 1.00 17.28 C
ATOM 10 O3' U B 4 -8.387 -24.833 -41.912 1.00 21.27 O
ATOM 11 C2' U B 4 -9.699 -26.869 -42.388 1.00 15.47 C
ATOM 12 O2' U B 4 -8.434 -27.478 -42.543 1.00 13.68 O
ATOM 13 C1' U B 4 -10.261 -27.166 -40.996 1.00 15.80 C
ATOM 14 N1 U B 4 -10.981 -28.443 -40.844 1.00 16.28 N
ATOM 15 C2 U B 4 -10.434 -29.379 -39.977 1.00 12.97 C
ATOM 16 O2 U B 4 -9.386 -29.195 -39.368 1.00 11.89 O
ATOM 17 N3 U B 4 -11.151 -30.540 -39.848 1.00 13.94 N
ATOM 18 C4 U B 4 -12.331 -30.867 -40.480 1.00 17.37 C
ATOM 19 O4 U B 4 -12.870 -31.948 -40.227 1.00 16.13 O
ATOM 20 C5 U B 4 -12.834 -29.857 -41.371 1.00 16.38 C
ATOM 21 C6 U B 4 -12.157 -28.709 -41.519 1.00 15.76 C
ATOM 22 P U B 5 -7.705 -23.570 -42.655 1.00 22.05 P
ATOM 23 OP1 U B 5 -7.240 -24.065 -43.968 1.00 24.79 O
ATOM 24 OP2 U B 5 -8.651 -22.430 -42.591 1.00 23.46 O
ATOM 25 O5' U B 5 -6.459 -23.157 -41.745 1.00 24.59 O
TER
ATOM 2 P A A 3 -16.363 -30.007 -43.824 1.00 34.21 P
ATOM 3 OP1 A A 3 -15.766 -30.777 -42.704 1.00 33.13 O
ATOM 4 OP2 A A 3 -15.892 -30.243 -45.211 1.00 37.43 O
ATOM 5 O5' A A 3 -16.244 -28.462 -43.509 1.00 29.82 O
ATOM 6 C5' A A 3 -16.955 -27.511 -44.307 1.00 24.07 C
ATOM 7 C4' A A 3 -16.790 -26.139 -43.727 1.00 23.85 C
ATOM 8 O4' A A 3 -17.852 -25.848 -42.778 1.00 22.99 O
ATOM 9 C3' A A 3 -15.467 -25.929 -42.999 1.00 23.34 C
ATOM 10 O3' A A 3 -14.910 -24.672 -43.349 1.00 22.28 O
ATOM 11 C2' A A 3 -15.879 -25.971 -41.530 1.00 23.28 C
ATOM 12 O2' A A 3 -15.028 -25.239 -40.674 1.00 26.95 O
ATOM 13 C1' A A 3 -17.281 -25.362 -41.585 1.00 23.32 C
ATOM 14 N9 A A 3 -18.148 -25.706 -40.455 1.00 20.99 N
ATOM 15 C8 A A 3 -18.287 -26.916 -39.818 1.00 20.59 C
ATOM 16 N7 A A 3 -19.095 -26.879 -38.786 1.00 21.02 N
ATOM 17 C5 A A 3 -19.525 -25.560 -38.743 1.00 20.12 C
ATOM 18 C6 A A 3 -20.385 -24.869 -37.863 1.00 22.15 C
ATOM 19 N6 A A 3 -20.960 -25.430 -36.793 1.00 23.58 N
ATOM 20 N1 A A 3 -20.628 -23.563 -38.116 1.00 21.49 N
ATOM 21 C2 A A 3 -20.028 -22.994 -39.171 1.00 20.87 C
ATOM 22 N3 A A 3 -19.186 -23.531 -40.055 1.00 22.58 N
ATOM 23 C4 A A 3 -18.972 -24.832 -39.781 1.00 21.45 C
ATOM 24 P U A 4 -13.551 -24.622 -44.205 1.00 22.61 P
ATOM 25 OP1 U A 4 -13.648 -25.615 -45.307 1.00 22.99 O
ATOM 26 OP2 U A 4 -13.261 -23.196 -44.522 1.00 23.23 O
ATOM 27 O5' U A 4 -12.434 -25.150 -43.200 1.00 21.69 O
TER
ATOM 1 O3' A B 3 -14.910 -24.672 -43.349 1.00 22.28 O
ATOM 2 P U B 4 -13.551 -24.622 -44.205 1.00 22.61 P
ATOM 3 OP1 U B 4 -13.648 -25.615 -45.307 1.00 22.99 O
ATOM 4 OP2 U B 4 -13.261 -23.196 -44.522 1.00 23.23 O
ATOM 5 O5' U B 4 -12.434 -25.150 -43.200 1.00 21.69 O
ATOM 6 C5' U B 4 -12.007 -24.340 -42.094 1.00 19.65 C
ATOM 7 C4' U B 4 -10.776 -24.932 -41.455 1.00 18.72 C
ATOM 8 O4' U B 4 -11.144 -26.112 -40.688 1.00 17.23 O
ATOM 9 C3' U B 4 -9.637 -25.337 -42.393 1.00 17.28 C
ATOM 10 O3' U B 4 -8.387 -24.833 -41.912 1.00 21.27 O
ATOM 11 C2' U B 4 -9.699 -26.869 -42.388 1.00 15.47 C
ATOM 12 O2' U B 4 -8.434 -27.478 -42.543 1.00 13.68 O
ATOM 13 C1' U B 4 -10.261 -27.166 -40.996 1.00 15.80 C
ATOM 14 N1 U B 4 -10.981 -28.443 -40.844 1.00 16.28 N
ATOM 15 C2 U B 4 -10.434 -29.379 -39.977 1.00 12.97 C
ATOM 16 O2 U B 4 -9.386 -29.195 -39.368 1.00 11.89 O
ATOM 17 N3 U B 4 -11.151 -30.540 -39.848 1.00 13.94 N
ATOM 18 C4 U B 4 -12.331 -30.867 -40.480 1.00 17.37 C
ATOM 19 O4 U B 4 -12.870 -31.948 -40.227 1.00 16.13 O
ATOM 20 C5 U B 4 -12.834 -29.857 -41.371 1.00 16.38 C
ATOM 21 C6 U B 4 -12.157 -28.709 -41.519 1.00 15.76 C
ATOM 22 P U B 5 -7.705 -23.570 -42.655 1.00 22.05 P
ATOM 23 OP1 U B 5 -7.240 -24.065 -43.968 1.00 24.79 O
ATOM 24 OP2 U B 5 -8.651 -22.430 -42.591 1.00 23.46 O
ATOM 25 O5' U B 5 -6.459 -23.157 -41.745 1.00 24.59 O
TER
Atoms:
OP1: (-15.766,-30.777,-42.704)
OP2: (-15.892,-30.243,-45.211)
C3': (-15.467,-25.929,-42.999)
C1': (-17.281,-25.362,-41.585)
C5': (-16.955,-27.511,-44.307)
O4': (-17.852,-25.848,-42.778)
C8: (-18.287,-26.916,-39.818)
O2': (-15.028,-25.239,-40.674)
C6: (-20.385,-24.869,-37.863)
C5: (-19.525,-25.560,-38.743)
C4: (-18.972,-24.832,-39.781)
P: (-16.363,-30.007,-43.824)
C4': (-16.790,-26.139,-43.727)
C2': (-15.879,-25.971,-41.530)
C2: (-20.028,-22.994,-39.171)
N1: (-20.628,-23.563,-38.116)
N3: (-19.186,-23.531,-40.055)
N6: (-20.960,-25.430,-36.793)
N7: (-19.095,-26.879,-38.786)
N9: (-18.148,-25.706,-40.455)
O5': (-16.244,-28.462,-43.509)
O3': (-14.910,-24.672,-43.349)
OP2: (-15.892,-30.243,-45.211)
C3': (-15.467,-25.929,-42.999)
C1': (-17.281,-25.362,-41.585)
C5': (-16.955,-27.511,-44.307)
O4': (-17.852,-25.848,-42.778)
C8: (-18.287,-26.916,-39.818)
O2': (-15.028,-25.239,-40.674)
C6: (-20.385,-24.869,-37.863)
C5: (-19.525,-25.560,-38.743)
C4: (-18.972,-24.832,-39.781)
P: (-16.363,-30.007,-43.824)
C4': (-16.790,-26.139,-43.727)
C2': (-15.879,-25.971,-41.530)
C2: (-20.028,-22.994,-39.171)
N1: (-20.628,-23.563,-38.116)
N3: (-19.186,-23.531,-40.055)
N6: (-20.960,-25.430,-36.793)
N7: (-19.095,-26.879,-38.786)
N9: (-18.148,-25.706,-40.455)
O5': (-16.244,-28.462,-43.509)
O3': (-14.910,-24.672,-43.349)
C4: (-12.331,-30.867,-40.480)
N3: (-11.151,-30.540,-39.848)
OP1: (-13.648,-25.615,-45.307)
OP2: (-13.261,-23.196,-44.522)
C2: (-10.434,-29.379,-39.977)
C1': (-10.261,-27.166,-40.996)
C3': (-9.637,-25.337,-42.393)
O5': (-12.434,-25.150,-43.200)
O4': (-11.144,-26.112,-40.688)
C5': (-12.007,-24.340,-42.094)
P: (-13.551,-24.622,-44.205)
C4': (-10.776,-24.932,-41.455)
C2': (-9.699,-26.869,-42.388)
O2': (-8.434,-27.478,-42.543)
N1: (-10.981,-28.443,-40.844)
O4: (-12.870,-31.948,-40.227)
O2: (-9.386,-29.195,-39.368)
C6: (-12.157,-28.709,-41.519)
C5: (-12.834,-29.857,-41.371)
O3': (-8.387,-24.833,-41.912)
N3: (-11.151,-30.540,-39.848)
OP1: (-13.648,-25.615,-45.307)
OP2: (-13.261,-23.196,-44.522)
C2: (-10.434,-29.379,-39.977)
C1': (-10.261,-27.166,-40.996)
C3': (-9.637,-25.337,-42.393)
O5': (-12.434,-25.150,-43.200)
O4': (-11.144,-26.112,-40.688)
C5': (-12.007,-24.340,-42.094)
P: (-13.551,-24.622,-44.205)
C4': (-10.776,-24.932,-41.455)
C2': (-9.699,-26.869,-42.388)
O2': (-8.434,-27.478,-42.543)
N1: (-10.981,-28.443,-40.844)
O4: (-12.870,-31.948,-40.227)
O2: (-9.386,-29.195,-39.368)
C6: (-12.157,-28.709,-41.519)
C5: (-12.834,-29.857,-41.371)
O3': (-8.387,-24.833,-41.912)
Image (generated by PyMOL):