Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VON:C3:C4
Extra
PDB:
ATOM 1 O3' A A 2 37.695 -5.103 -0.515 1.00 35.90 O
ATOM 2 P A A 3 36.673 -5.215 -1.750 1.00 32.51 P
ATOM 3 OP1 A A 3 35.436 -4.513 -1.329 1.00 33.71 O
ATOM 4 OP2 A A 3 37.323 -4.845 -3.027 1.00 35.62 O
ATOM 5 O5' A A 3 36.404 -6.773 -1.757 1.00 32.33 O
ATOM 6 C5' A A 3 37.504 -7.694 -1.680 1.00 26.47 C
ATOM 7 C4' A A 3 36.988 -9.074 -1.391 1.00 25.53 C
ATOM 8 O4' A A 3 36.963 -9.329 0.040 1.00 23.76 O
ATOM 9 C3' A A 3 35.574 -9.315 -1.909 1.00 25.22 C
ATOM 10 O3' A A 3 35.484 -10.599 -2.511 1.00 24.90 O
ATOM 11 C2' A A 3 34.730 -9.226 -0.641 1.00 24.84 C
ATOM 12 O2' A A 3 33.510 -9.933 -0.702 1.00 26.35 O
ATOM 13 C1' A A 3 35.688 -9.811 0.398 1.00 24.01 C
ATOM 14 N9 A A 3 35.398 -9.453 1.787 1.00 22.28 N
ATOM 15 C8 A A 3 35.016 -8.236 2.305 1.00 22.20 C
ATOM 16 N7 A A 3 34.749 -8.270 3.589 1.00 21.63 N
ATOM 17 C5 A A 3 34.986 -9.591 3.947 1.00 21.25 C
ATOM 18 C6 A A 3 34.864 -10.279 5.169 1.00 23.52 C
ATOM 19 N6 A A 3 34.441 -9.709 6.304 1.00 25.82 N
ATOM 20 N1 A A 3 35.188 -11.592 5.188 1.00 23.25 N
ATOM 21 C2 A A 3 35.597 -12.167 4.050 1.00 22.30 C
ATOM 22 N3 A A 3 35.741 -11.630 2.839 1.00 23.70 N
ATOM 23 C4 A A 3 35.412 -10.325 2.854 1.00 23.10 C
ATOM 24 P U A 4 35.140 -10.710 -4.073 1.00 24.41 P
ATOM 25 OP1 U A 4 36.012 -9.757 -4.812 1.00 24.09 O
ATOM 26 OP2 U A 4 35.140 -12.151 -4.443 1.00 27.25 O
ATOM 27 O5' U A 4 33.653 -10.160 -4.169 1.00 21.88 O
TER
ATOM 1 O3' A B 3 35.484 -10.599 -2.511 1.00 24.90 O
ATOM 2 P U B 4 35.140 -10.710 -4.073 1.00 24.41 P
ATOM 3 OP1 U B 4 36.012 -9.757 -4.812 1.00 24.09 O
ATOM 4 OP2 U B 4 35.140 -12.151 -4.443 1.00 27.25 O
ATOM 5 O5' U B 4 33.653 -10.160 -4.169 1.00 21.88 O
ATOM 6 C5' U B 4 32.549 -10.939 -3.677 1.00 18.68 C
ATOM 7 C4' U B 4 31.254 -10.368 -4.186 1.00 15.18 C
ATOM 8 O4' U B 4 30.914 -9.183 -3.419 1.00 11.77 O
ATOM 9 C3' U B 4 31.244 -9.968 -5.663 1.00 16.11 C
ATOM 10 O3' U B 4 30.076 -10.464 -6.310 1.00 18.60 O
ATOM 11 C2' U B 4 31.290 -8.437 -5.623 1.00 15.18 C
ATOM 12 O2' U B 4 30.574 -7.838 -6.683 1.00 13.09 O
ATOM 13 C1' U B 4 30.592 -8.133 -4.301 1.00 14.59 C
ATOM 14 N1 U B 4 30.952 -6.855 -3.668 1.00 17.53 N
ATOM 15 C2 U B 4 29.942 -5.913 -3.541 1.00 14.23 C
ATOM 16 O2 U B 4 28.813 -6.100 -3.948 1.00 9.19 O
ATOM 17 N3 U B 4 30.310 -4.745 -2.925 1.00 16.18 N
ATOM 18 C4 U B 4 31.564 -4.420 -2.434 1.00 17.51 C
ATOM 19 O4 U B 4 31.732 -3.327 -1.887 1.00 14.86 O
ATOM 20 C5 U B 4 32.561 -5.438 -2.611 1.00 16.31 C
ATOM 21 C6 U B 4 32.230 -6.592 -3.208 1.00 16.52 C
ATOM 22 P U B 5 30.227 -11.655 -7.388 1.00 22.14 P
ATOM 23 OP1 U B 5 30.821 -11.049 -8.610 1.00 22.18 O
ATOM 24 OP2 U B 5 30.925 -12.774 -6.716 1.00 21.63 O
ATOM 25 O5' U B 5 28.734 -12.133 -7.691 1.00 22.93 O
TER
ATOM 2 P A A 3 36.673 -5.215 -1.750 1.00 32.51 P
ATOM 3 OP1 A A 3 35.436 -4.513 -1.329 1.00 33.71 O
ATOM 4 OP2 A A 3 37.323 -4.845 -3.027 1.00 35.62 O
ATOM 5 O5' A A 3 36.404 -6.773 -1.757 1.00 32.33 O
ATOM 6 C5' A A 3 37.504 -7.694 -1.680 1.00 26.47 C
ATOM 7 C4' A A 3 36.988 -9.074 -1.391 1.00 25.53 C
ATOM 8 O4' A A 3 36.963 -9.329 0.040 1.00 23.76 O
ATOM 9 C3' A A 3 35.574 -9.315 -1.909 1.00 25.22 C
ATOM 10 O3' A A 3 35.484 -10.599 -2.511 1.00 24.90 O
ATOM 11 C2' A A 3 34.730 -9.226 -0.641 1.00 24.84 C
ATOM 12 O2' A A 3 33.510 -9.933 -0.702 1.00 26.35 O
ATOM 13 C1' A A 3 35.688 -9.811 0.398 1.00 24.01 C
ATOM 14 N9 A A 3 35.398 -9.453 1.787 1.00 22.28 N
ATOM 15 C8 A A 3 35.016 -8.236 2.305 1.00 22.20 C
ATOM 16 N7 A A 3 34.749 -8.270 3.589 1.00 21.63 N
ATOM 17 C5 A A 3 34.986 -9.591 3.947 1.00 21.25 C
ATOM 18 C6 A A 3 34.864 -10.279 5.169 1.00 23.52 C
ATOM 19 N6 A A 3 34.441 -9.709 6.304 1.00 25.82 N
ATOM 20 N1 A A 3 35.188 -11.592 5.188 1.00 23.25 N
ATOM 21 C2 A A 3 35.597 -12.167 4.050 1.00 22.30 C
ATOM 22 N3 A A 3 35.741 -11.630 2.839 1.00 23.70 N
ATOM 23 C4 A A 3 35.412 -10.325 2.854 1.00 23.10 C
ATOM 24 P U A 4 35.140 -10.710 -4.073 1.00 24.41 P
ATOM 25 OP1 U A 4 36.012 -9.757 -4.812 1.00 24.09 O
ATOM 26 OP2 U A 4 35.140 -12.151 -4.443 1.00 27.25 O
ATOM 27 O5' U A 4 33.653 -10.160 -4.169 1.00 21.88 O
TER
ATOM 1 O3' A B 3 35.484 -10.599 -2.511 1.00 24.90 O
ATOM 2 P U B 4 35.140 -10.710 -4.073 1.00 24.41 P
ATOM 3 OP1 U B 4 36.012 -9.757 -4.812 1.00 24.09 O
ATOM 4 OP2 U B 4 35.140 -12.151 -4.443 1.00 27.25 O
ATOM 5 O5' U B 4 33.653 -10.160 -4.169 1.00 21.88 O
ATOM 6 C5' U B 4 32.549 -10.939 -3.677 1.00 18.68 C
ATOM 7 C4' U B 4 31.254 -10.368 -4.186 1.00 15.18 C
ATOM 8 O4' U B 4 30.914 -9.183 -3.419 1.00 11.77 O
ATOM 9 C3' U B 4 31.244 -9.968 -5.663 1.00 16.11 C
ATOM 10 O3' U B 4 30.076 -10.464 -6.310 1.00 18.60 O
ATOM 11 C2' U B 4 31.290 -8.437 -5.623 1.00 15.18 C
ATOM 12 O2' U B 4 30.574 -7.838 -6.683 1.00 13.09 O
ATOM 13 C1' U B 4 30.592 -8.133 -4.301 1.00 14.59 C
ATOM 14 N1 U B 4 30.952 -6.855 -3.668 1.00 17.53 N
ATOM 15 C2 U B 4 29.942 -5.913 -3.541 1.00 14.23 C
ATOM 16 O2 U B 4 28.813 -6.100 -3.948 1.00 9.19 O
ATOM 17 N3 U B 4 30.310 -4.745 -2.925 1.00 16.18 N
ATOM 18 C4 U B 4 31.564 -4.420 -2.434 1.00 17.51 C
ATOM 19 O4 U B 4 31.732 -3.327 -1.887 1.00 14.86 O
ATOM 20 C5 U B 4 32.561 -5.438 -2.611 1.00 16.31 C
ATOM 21 C6 U B 4 32.230 -6.592 -3.208 1.00 16.52 C
ATOM 22 P U B 5 30.227 -11.655 -7.388 1.00 22.14 P
ATOM 23 OP1 U B 5 30.821 -11.049 -8.610 1.00 22.18 O
ATOM 24 OP2 U B 5 30.925 -12.774 -6.716 1.00 21.63 O
ATOM 25 O5' U B 5 28.734 -12.133 -7.691 1.00 22.93 O
TER
Atoms:
OP1: (35.436,-4.513,-1.329)
OP2: (37.323,-4.845,-3.027)
C3': (35.574,-9.315,-1.909)
C1': (35.688,-9.811,0.398)
C5': (37.504,-7.694,-1.680)
O4': (36.963,-9.329,0.040)
C8: (35.016,-8.236,2.305)
O2': (33.510,-9.933,-0.702)
C6: (34.864,-10.279,5.169)
C5: (34.986,-9.591,3.947)
C4: (35.412,-10.325,2.854)
P: (36.673,-5.215,-1.750)
C4': (36.988,-9.074,-1.391)
C2': (34.730,-9.226,-0.641)
C2: (35.597,-12.167,4.050)
N1: (35.188,-11.592,5.188)
N3: (35.741,-11.630,2.839)
N6: (34.441,-9.709,6.304)
N7: (34.749,-8.270,3.589)
N9: (35.398,-9.453,1.787)
O5': (36.404,-6.773,-1.757)
O3': (35.484,-10.599,-2.511)
OP2: (37.323,-4.845,-3.027)
C3': (35.574,-9.315,-1.909)
C1': (35.688,-9.811,0.398)
C5': (37.504,-7.694,-1.680)
O4': (36.963,-9.329,0.040)
C8: (35.016,-8.236,2.305)
O2': (33.510,-9.933,-0.702)
C6: (34.864,-10.279,5.169)
C5: (34.986,-9.591,3.947)
C4: (35.412,-10.325,2.854)
P: (36.673,-5.215,-1.750)
C4': (36.988,-9.074,-1.391)
C2': (34.730,-9.226,-0.641)
C2: (35.597,-12.167,4.050)
N1: (35.188,-11.592,5.188)
N3: (35.741,-11.630,2.839)
N6: (34.441,-9.709,6.304)
N7: (34.749,-8.270,3.589)
N9: (35.398,-9.453,1.787)
O5': (36.404,-6.773,-1.757)
O3': (35.484,-10.599,-2.511)
C4: (31.564,-4.420,-2.434)
N3: (30.310,-4.745,-2.925)
OP1: (36.012,-9.757,-4.812)
OP2: (35.140,-12.151,-4.443)
C2: (29.942,-5.913,-3.541)
C1': (30.592,-8.133,-4.301)
C3': (31.244,-9.968,-5.663)
O5': (33.653,-10.160,-4.169)
O4': (30.914,-9.183,-3.419)
C5': (32.549,-10.939,-3.677)
P: (35.140,-10.710,-4.073)
C4': (31.254,-10.368,-4.186)
C2': (31.290,-8.437,-5.623)
O2': (30.574,-7.838,-6.683)
N1: (30.952,-6.855,-3.668)
O4: (31.732,-3.327,-1.887)
O2: (28.813,-6.100,-3.948)
C6: (32.230,-6.592,-3.208)
C5: (32.561,-5.438,-2.611)
O3': (30.076,-10.464,-6.310)
N3: (30.310,-4.745,-2.925)
OP1: (36.012,-9.757,-4.812)
OP2: (35.140,-12.151,-4.443)
C2: (29.942,-5.913,-3.541)
C1': (30.592,-8.133,-4.301)
C3': (31.244,-9.968,-5.663)
O5': (33.653,-10.160,-4.169)
O4': (30.914,-9.183,-3.419)
C5': (32.549,-10.939,-3.677)
P: (35.140,-10.710,-4.073)
C4': (31.254,-10.368,-4.186)
C2': (31.290,-8.437,-5.623)
O2': (30.574,-7.838,-6.683)
N1: (30.952,-6.855,-3.668)
O4: (31.732,-3.327,-1.887)
O2: (28.813,-6.100,-3.948)
C6: (32.230,-6.592,-3.208)
C5: (32.561,-5.438,-2.611)
O3': (30.076,-10.464,-6.310)
Image (generated by PyMOL):