Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11019:11020
Extra
PDB:
ATOM 1 O3' U A1018 56.956 -85.785 55.321 1.00 67.67 O
ATOM 2 P A A1019 55.930 -86.998 55.080 1.00 69.70 P
ATOM 3 OP1 A A1019 55.878 -87.783 56.351 1.00 69.99 O
ATOM 4 OP2 A A1019 56.353 -87.673 53.821 1.00 70.18 O
ATOM 5 O5' A A1019 54.541 -86.256 54.848 1.00 69.24 O
ATOM 6 C5' A A1019 53.316 -86.886 55.162 1.00 69.44 C
ATOM 7 C4' A A1019 52.479 -86.040 56.079 1.00 68.89 C
ATOM 8 O4' A A1019 53.172 -85.859 57.332 1.00 68.75 O
ATOM 9 C3' A A1019 52.150 -84.632 55.576 1.00 68.22 C
ATOM 10 O3' A A1019 50.899 -84.260 56.111 1.00 67.92 O
ATOM 11 C2' A A1019 53.204 -83.788 56.266 1.00 67.83 C
ATOM 12 O2' A A1019 52.881 -82.414 56.393 1.00 67.15 O
ATOM 13 C1' A A1019 53.240 -84.477 57.616 1.00 68.07 C
ATOM 14 N9 A A1019 54.437 -84.207 58.400 1.00 67.97 N
ATOM 15 C8 A A1019 55.756 -84.238 58.056 1.00 68.11 C
ATOM 16 N7 A A1019 56.525 -83.912 59.064 1.00 67.96 N
ATOM 17 C5 A A1019 55.640 -83.662 60.110 1.00 67.71 C
ATOM 18 C6 A A1019 55.809 -83.271 61.458 1.00 67.48 C
ATOM 19 N6 A A1019 57.010 -83.062 62.016 1.00 67.46 N
ATOM 20 N1 A A1019 54.705 -83.097 62.221 1.00 67.28 N
ATOM 21 C2 A A1019 53.518 -83.320 61.647 1.00 67.31 C
ATOM 22 N3 A A1019 53.236 -83.689 60.400 1.00 67.52 N
ATOM 23 C4 A A1019 54.355 -83.835 59.694 1.00 67.71 C
ATOM 24 P C A1020 49.547 -84.701 55.408 1.00 58.11 P
ATOM 25 OP1 C A1020 48.480 -84.702 56.477 1.00 57.97 O
ATOM 26 OP2 C A1020 49.821 -85.952 54.648 1.00 58.80 O
ATOM 27 O5' C A1020 49.323 -83.491 54.400 1.00 57.60 O
TER
ATOM 1 O3' A B1019 50.899 -84.260 56.111 1.00 67.92 O
ATOM 2 P C B1020 49.547 -84.701 55.408 1.00 58.11 P
ATOM 3 OP1 C B1020 48.480 -84.702 56.477 1.00 57.97 O
ATOM 4 OP2 C B1020 49.821 -85.952 54.648 1.00 58.80 O
ATOM 5 O5' C B1020 49.323 -83.491 54.400 1.00 57.60 O
ATOM 6 C5' C B1020 48.882 -82.233 54.870 1.00 56.95 C
ATOM 7 C4' C B1020 48.950 -81.211 53.785 1.00 56.57 C
ATOM 8 O4' C B1020 50.331 -80.996 53.420 1.00 56.58 O
ATOM 9 C3' C B1020 48.274 -81.590 52.484 1.00 56.85 C
ATOM 10 O3' C B1020 46.879 -81.341 52.515 1.00 56.67 O
ATOM 11 C2' C B1020 49.014 -80.727 51.472 1.00 56.59 C
ATOM 12 O2' C B1020 48.515 -79.397 51.497 1.00 55.96 O
ATOM 13 C1' C B1020 50.423 -80.702 52.054 1.00 56.58 C
ATOM 14 N1 C B1020 51.307 -81.678 51.433 1.00 57.14 N
ATOM 15 C2 C B1020 51.772 -81.412 50.153 1.00 57.19 C
ATOM 16 O2 C B1020 51.426 -80.382 49.552 1.00 56.76 O
ATOM 17 N3 C B1020 52.600 -82.319 49.612 1.00 57.73 N
ATOM 18 C4 C B1020 52.967 -83.395 50.285 1.00 58.18 C
ATOM 19 N4 C B1020 53.800 -84.223 49.644 1.00 58.71 N
ATOM 20 C5 C B1020 52.510 -83.674 51.611 1.00 58.14 C
ATOM 21 C6 C B1020 51.679 -82.790 52.149 1.00 57.61 C
ATOM 22 P U B1021 45.813 -82.514 52.225 1.00 57.49 P
ATOM 23 OP1 U B1021 44.489 -81.994 52.623 1.00 57.17 O
ATOM 24 OP2 U B1021 46.324 -83.755 52.863 1.00 58.03 O
ATOM 25 O5' U B1021 45.880 -82.664 50.666 1.00 57.74 O
TER
ATOM 2 P A A1019 55.930 -86.998 55.080 1.00 69.70 P
ATOM 3 OP1 A A1019 55.878 -87.783 56.351 1.00 69.99 O
ATOM 4 OP2 A A1019 56.353 -87.673 53.821 1.00 70.18 O
ATOM 5 O5' A A1019 54.541 -86.256 54.848 1.00 69.24 O
ATOM 6 C5' A A1019 53.316 -86.886 55.162 1.00 69.44 C
ATOM 7 C4' A A1019 52.479 -86.040 56.079 1.00 68.89 C
ATOM 8 O4' A A1019 53.172 -85.859 57.332 1.00 68.75 O
ATOM 9 C3' A A1019 52.150 -84.632 55.576 1.00 68.22 C
ATOM 10 O3' A A1019 50.899 -84.260 56.111 1.00 67.92 O
ATOM 11 C2' A A1019 53.204 -83.788 56.266 1.00 67.83 C
ATOM 12 O2' A A1019 52.881 -82.414 56.393 1.00 67.15 O
ATOM 13 C1' A A1019 53.240 -84.477 57.616 1.00 68.07 C
ATOM 14 N9 A A1019 54.437 -84.207 58.400 1.00 67.97 N
ATOM 15 C8 A A1019 55.756 -84.238 58.056 1.00 68.11 C
ATOM 16 N7 A A1019 56.525 -83.912 59.064 1.00 67.96 N
ATOM 17 C5 A A1019 55.640 -83.662 60.110 1.00 67.71 C
ATOM 18 C6 A A1019 55.809 -83.271 61.458 1.00 67.48 C
ATOM 19 N6 A A1019 57.010 -83.062 62.016 1.00 67.46 N
ATOM 20 N1 A A1019 54.705 -83.097 62.221 1.00 67.28 N
ATOM 21 C2 A A1019 53.518 -83.320 61.647 1.00 67.31 C
ATOM 22 N3 A A1019 53.236 -83.689 60.400 1.00 67.52 N
ATOM 23 C4 A A1019 54.355 -83.835 59.694 1.00 67.71 C
ATOM 24 P C A1020 49.547 -84.701 55.408 1.00 58.11 P
ATOM 25 OP1 C A1020 48.480 -84.702 56.477 1.00 57.97 O
ATOM 26 OP2 C A1020 49.821 -85.952 54.648 1.00 58.80 O
ATOM 27 O5' C A1020 49.323 -83.491 54.400 1.00 57.60 O
TER
ATOM 1 O3' A B1019 50.899 -84.260 56.111 1.00 67.92 O
ATOM 2 P C B1020 49.547 -84.701 55.408 1.00 58.11 P
ATOM 3 OP1 C B1020 48.480 -84.702 56.477 1.00 57.97 O
ATOM 4 OP2 C B1020 49.821 -85.952 54.648 1.00 58.80 O
ATOM 5 O5' C B1020 49.323 -83.491 54.400 1.00 57.60 O
ATOM 6 C5' C B1020 48.882 -82.233 54.870 1.00 56.95 C
ATOM 7 C4' C B1020 48.950 -81.211 53.785 1.00 56.57 C
ATOM 8 O4' C B1020 50.331 -80.996 53.420 1.00 56.58 O
ATOM 9 C3' C B1020 48.274 -81.590 52.484 1.00 56.85 C
ATOM 10 O3' C B1020 46.879 -81.341 52.515 1.00 56.67 O
ATOM 11 C2' C B1020 49.014 -80.727 51.472 1.00 56.59 C
ATOM 12 O2' C B1020 48.515 -79.397 51.497 1.00 55.96 O
ATOM 13 C1' C B1020 50.423 -80.702 52.054 1.00 56.58 C
ATOM 14 N1 C B1020 51.307 -81.678 51.433 1.00 57.14 N
ATOM 15 C2 C B1020 51.772 -81.412 50.153 1.00 57.19 C
ATOM 16 O2 C B1020 51.426 -80.382 49.552 1.00 56.76 O
ATOM 17 N3 C B1020 52.600 -82.319 49.612 1.00 57.73 N
ATOM 18 C4 C B1020 52.967 -83.395 50.285 1.00 58.18 C
ATOM 19 N4 C B1020 53.800 -84.223 49.644 1.00 58.71 N
ATOM 20 C5 C B1020 52.510 -83.674 51.611 1.00 58.14 C
ATOM 21 C6 C B1020 51.679 -82.790 52.149 1.00 57.61 C
ATOM 22 P U B1021 45.813 -82.514 52.225 1.00 57.49 P
ATOM 23 OP1 U B1021 44.489 -81.994 52.623 1.00 57.17 O
ATOM 24 OP2 U B1021 46.324 -83.755 52.863 1.00 58.03 O
ATOM 25 O5' U B1021 45.880 -82.664 50.666 1.00 57.74 O
TER
Atoms:
OP1: (55.878,-87.783,56.351)
OP2: (56.353,-87.673,53.821)
C3': (52.150,-84.632,55.576)
C1': (53.240,-84.477,57.616)
C5': (53.316,-86.886,55.162)
O4': (53.172,-85.859,57.332)
C8: (55.756,-84.238,58.056)
O2': (52.881,-82.414,56.393)
C6: (55.809,-83.271,61.458)
C5: (55.640,-83.662,60.110)
C4: (54.355,-83.835,59.694)
P: (55.930,-86.998,55.080)
C4': (52.479,-86.040,56.079)
C2': (53.204,-83.788,56.266)
C2: (53.518,-83.320,61.647)
N1: (54.705,-83.097,62.221)
N3: (53.236,-83.689,60.400)
N6: (57.010,-83.062,62.016)
N7: (56.525,-83.912,59.064)
N9: (54.437,-84.207,58.400)
O5': (54.541,-86.256,54.848)
O3': (50.899,-84.260,56.111)
OP2: (56.353,-87.673,53.821)
C3': (52.150,-84.632,55.576)
C1': (53.240,-84.477,57.616)
C5': (53.316,-86.886,55.162)
O4': (53.172,-85.859,57.332)
C8: (55.756,-84.238,58.056)
O2': (52.881,-82.414,56.393)
C6: (55.809,-83.271,61.458)
C5: (55.640,-83.662,60.110)
C4: (54.355,-83.835,59.694)
P: (55.930,-86.998,55.080)
C4': (52.479,-86.040,56.079)
C2': (53.204,-83.788,56.266)
C2: (53.518,-83.320,61.647)
N1: (54.705,-83.097,62.221)
N3: (53.236,-83.689,60.400)
N6: (57.010,-83.062,62.016)
N7: (56.525,-83.912,59.064)
N9: (54.437,-84.207,58.400)
O5': (54.541,-86.256,54.848)
O3': (50.899,-84.260,56.111)
C2: (51.772,-81.412,50.153)
OP1: (48.480,-84.702,56.477)
OP2: (49.821,-85.952,54.648)
C4: (52.967,-83.395,50.285)
O5': (49.323,-83.491,54.400)
C3': (48.274,-81.590,52.484)
C1': (50.423,-80.702,52.054)
O4': (50.331,-80.996,53.420)
C5': (48.882,-82.233,54.870)
P: (49.547,-84.701,55.408)
O2: (51.426,-80.382,49.552)
C4': (48.950,-81.211,53.785)
C2': (49.014,-80.727,51.472)
O2': (48.515,-79.397,51.497)
N1: (51.307,-81.678,51.433)
N3: (52.600,-82.319,49.612)
N4: (53.800,-84.223,49.644)
C6: (51.679,-82.790,52.149)
C5: (52.510,-83.674,51.611)
O3': (46.879,-81.341,52.515)
OP1: (48.480,-84.702,56.477)
OP2: (49.821,-85.952,54.648)
C4: (52.967,-83.395,50.285)
O5': (49.323,-83.491,54.400)
C3': (48.274,-81.590,52.484)
C1': (50.423,-80.702,52.054)
O4': (50.331,-80.996,53.420)
C5': (48.882,-82.233,54.870)
P: (49.547,-84.701,55.408)
O2: (51.426,-80.382,49.552)
C4': (48.950,-81.211,53.785)
C2': (49.014,-80.727,51.472)
O2': (48.515,-79.397,51.497)
N1: (51.307,-81.678,51.433)
N3: (52.600,-82.319,49.612)
N4: (53.800,-84.223,49.644)
C6: (51.679,-82.790,52.149)
C5: (52.510,-83.674,51.611)
O3': (46.879,-81.341,52.515)
Image (generated by PyMOL):