Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1ZDK:S14:S6
Extra
PDB:
ATOM 1 O3' C A 13 -7.099 93.783 4.465 0.50125.77 O
ATOM 2 P C A 14 -5.709 93.155 3.924 0.50127.47 P
ATOM 3 OP1 C A 14 -5.744 91.655 4.104 0.50128.21 O
ATOM 4 OP2 C A 14 -4.547 93.970 4.483 0.50126.14 O
ATOM 5 O5' C A 14 -5.760 93.427 2.358 0.50127.12 O
ATOM 6 C5' C A 14 -6.770 92.809 1.549 0.50126.78 C
ATOM 7 C4' C A 14 -6.412 92.987 0.104 0.50126.18 C
ATOM 8 O4' C A 14 -6.331 94.415 -0.164 0.50125.22 O
ATOM 9 C3' C A 14 -5.021 92.460 -0.225 0.50126.36 C
ATOM 10 O3' C A 14 -5.028 91.083 -0.568 0.50126.44 O
ATOM 11 C2' C A 14 -4.588 93.332 -1.393 0.50125.81 C
ATOM 12 O2' C A 14 -5.084 92.861 -2.632 0.50127.09 O
ATOM 13 C1' C A 14 -5.236 94.670 -1.030 0.50124.57 C
ATOM 14 N1 C A 14 -4.268 95.516 -0.331 0.50122.93 N
ATOM 15 C2 C A 14 -3.285 96.160 -1.087 0.50122.36 C
ATOM 16 O2 C A 14 -3.296 96.027 -2.327 0.50121.23 O
ATOM 17 N3 C A 14 -2.351 96.914 -0.457 0.50122.71 N
ATOM 18 C4 C A 14 -2.392 97.045 0.878 0.50123.18 C
ATOM 19 N4 C A 14 -1.441 97.792 1.461 0.50124.16 N
ATOM 20 C5 C A 14 -3.405 96.411 1.672 0.50122.79 C
ATOM 21 C6 C A 14 -4.312 95.663 1.032 0.50122.48 C
ATOM 22 P A A 15 -3.660 90.235 -0.461 0.50126.67 P
ATOM 23 OP1 A A 15 -4.074 88.802 -0.724 0.50127.31 O
ATOM 24 OP2 A A 15 -2.937 90.592 0.829 0.50126.01 O
ATOM 25 O5' A A 15 -2.766 90.747 -1.684 0.50126.32 O
TER
ATOM 1 O3' A B 5 -1.990 103.674 -10.791 0.50 96.11 O
ATOM 2 P G B 6 -1.585 102.213 -10.237 0.50 97.60 P
ATOM 3 OP1 G B 6 -0.232 101.813 -10.736 0.50 98.42 O
ATOM 4 OP2 G B 6 -2.767 101.321 -10.480 0.50 97.06 O
ATOM 5 O5' G B 6 -1.459 102.446 -8.664 0.50 97.05 O
ATOM 6 C5' G B 6 -2.632 102.722 -7.885 0.50 94.74 C
ATOM 7 C4' G B 6 -3.420 101.453 -7.712 0.50 93.06 C
ATOM 8 O4' G B 6 -2.595 100.486 -7.006 0.50 93.64 O
ATOM 9 C3' G B 6 -4.676 101.596 -6.881 0.50 91.40 C
ATOM 10 O3' G B 6 -5.765 102.018 -7.711 0.50 89.31 O
ATOM 11 C2' G B 6 -4.849 100.195 -6.295 0.50 91.52 C
ATOM 12 O2' G B 6 -5.515 99.307 -7.179 0.50 89.24 O
ATOM 13 C1' G B 6 -3.386 99.761 -6.082 0.50 92.77 C
ATOM 14 N9 G B 6 -2.895 100.077 -4.738 0.50 93.44 N
ATOM 15 C8 G B 6 -1.708 100.706 -4.396 0.50 93.55 C
ATOM 16 N7 G B 6 -1.595 100.917 -3.108 0.50 94.11 N
ATOM 17 C5 G B 6 -2.766 100.388 -2.570 0.50 93.56 C
ATOM 18 C6 G B 6 -3.225 100.341 -1.229 0.50 93.04 C
ATOM 19 O6 G B 6 -2.685 100.807 -0.205 0.50 92.04 O
ATOM 20 N1 G B 6 -4.454 99.682 -1.138 0.50 93.05 N
ATOM 21 C2 G B 6 -5.157 99.144 -2.204 0.50 93.04 C
ATOM 22 N2 G B 6 -6.315 98.497 -1.919 0.50 92.28 N
ATOM 23 N3 G B 6 -4.753 99.218 -3.457 0.50 92.73 N
ATOM 24 C4 G B 6 -3.561 99.843 -3.568 0.50 93.44 C
ATOM 25 P G B 7 -6.557 103.379 -7.352 0.50 87.21 P
ATOM 26 OP1 G B 7 -7.228 103.909 -8.579 0.50 83.56 O
ATOM 27 OP2 G B 7 -5.602 104.251 -6.586 0.50 85.87 O
ATOM 28 O5' G B 7 -7.671 102.933 -6.297 0.50 88.91 O
TER
ATOM 2 P C A 14 -5.709 93.155 3.924 0.50127.47 P
ATOM 3 OP1 C A 14 -5.744 91.655 4.104 0.50128.21 O
ATOM 4 OP2 C A 14 -4.547 93.970 4.483 0.50126.14 O
ATOM 5 O5' C A 14 -5.760 93.427 2.358 0.50127.12 O
ATOM 6 C5' C A 14 -6.770 92.809 1.549 0.50126.78 C
ATOM 7 C4' C A 14 -6.412 92.987 0.104 0.50126.18 C
ATOM 8 O4' C A 14 -6.331 94.415 -0.164 0.50125.22 O
ATOM 9 C3' C A 14 -5.021 92.460 -0.225 0.50126.36 C
ATOM 10 O3' C A 14 -5.028 91.083 -0.568 0.50126.44 O
ATOM 11 C2' C A 14 -4.588 93.332 -1.393 0.50125.81 C
ATOM 12 O2' C A 14 -5.084 92.861 -2.632 0.50127.09 O
ATOM 13 C1' C A 14 -5.236 94.670 -1.030 0.50124.57 C
ATOM 14 N1 C A 14 -4.268 95.516 -0.331 0.50122.93 N
ATOM 15 C2 C A 14 -3.285 96.160 -1.087 0.50122.36 C
ATOM 16 O2 C A 14 -3.296 96.027 -2.327 0.50121.23 O
ATOM 17 N3 C A 14 -2.351 96.914 -0.457 0.50122.71 N
ATOM 18 C4 C A 14 -2.392 97.045 0.878 0.50123.18 C
ATOM 19 N4 C A 14 -1.441 97.792 1.461 0.50124.16 N
ATOM 20 C5 C A 14 -3.405 96.411 1.672 0.50122.79 C
ATOM 21 C6 C A 14 -4.312 95.663 1.032 0.50122.48 C
ATOM 22 P A A 15 -3.660 90.235 -0.461 0.50126.67 P
ATOM 23 OP1 A A 15 -4.074 88.802 -0.724 0.50127.31 O
ATOM 24 OP2 A A 15 -2.937 90.592 0.829 0.50126.01 O
ATOM 25 O5' A A 15 -2.766 90.747 -1.684 0.50126.32 O
TER
ATOM 1 O3' A B 5 -1.990 103.674 -10.791 0.50 96.11 O
ATOM 2 P G B 6 -1.585 102.213 -10.237 0.50 97.60 P
ATOM 3 OP1 G B 6 -0.232 101.813 -10.736 0.50 98.42 O
ATOM 4 OP2 G B 6 -2.767 101.321 -10.480 0.50 97.06 O
ATOM 5 O5' G B 6 -1.459 102.446 -8.664 0.50 97.05 O
ATOM 6 C5' G B 6 -2.632 102.722 -7.885 0.50 94.74 C
ATOM 7 C4' G B 6 -3.420 101.453 -7.712 0.50 93.06 C
ATOM 8 O4' G B 6 -2.595 100.486 -7.006 0.50 93.64 O
ATOM 9 C3' G B 6 -4.676 101.596 -6.881 0.50 91.40 C
ATOM 10 O3' G B 6 -5.765 102.018 -7.711 0.50 89.31 O
ATOM 11 C2' G B 6 -4.849 100.195 -6.295 0.50 91.52 C
ATOM 12 O2' G B 6 -5.515 99.307 -7.179 0.50 89.24 O
ATOM 13 C1' G B 6 -3.386 99.761 -6.082 0.50 92.77 C
ATOM 14 N9 G B 6 -2.895 100.077 -4.738 0.50 93.44 N
ATOM 15 C8 G B 6 -1.708 100.706 -4.396 0.50 93.55 C
ATOM 16 N7 G B 6 -1.595 100.917 -3.108 0.50 94.11 N
ATOM 17 C5 G B 6 -2.766 100.388 -2.570 0.50 93.56 C
ATOM 18 C6 G B 6 -3.225 100.341 -1.229 0.50 93.04 C
ATOM 19 O6 G B 6 -2.685 100.807 -0.205 0.50 92.04 O
ATOM 20 N1 G B 6 -4.454 99.682 -1.138 0.50 93.05 N
ATOM 21 C2 G B 6 -5.157 99.144 -2.204 0.50 93.04 C
ATOM 22 N2 G B 6 -6.315 98.497 -1.919 0.50 92.28 N
ATOM 23 N3 G B 6 -4.753 99.218 -3.457 0.50 92.73 N
ATOM 24 C4 G B 6 -3.561 99.843 -3.568 0.50 93.44 C
ATOM 25 P G B 7 -6.557 103.379 -7.352 0.50 87.21 P
ATOM 26 OP1 G B 7 -7.228 103.909 -8.579 0.50 83.56 O
ATOM 27 OP2 G B 7 -5.602 104.251 -6.586 0.50 85.87 O
ATOM 28 O5' G B 7 -7.671 102.933 -6.297 0.50 88.91 O
TER
Atoms:
C2: (-3.285,96.160,-1.087)
OP1: (-5.744,91.655,4.104)
OP2: (-4.547,93.970,4.483)
C4: (-2.392,97.045,0.878)
O5': (-5.760,93.427,2.358)
C3': (-5.021,92.460,-0.225)
C1': (-5.236,94.670,-1.030)
O4': (-6.331,94.415,-0.164)
C5': (-6.770,92.809,1.549)
P: (-5.709,93.155,3.924)
O2: (-3.296,96.027,-2.327)
C4': (-6.412,92.987,0.104)
C2': (-4.588,93.332,-1.393)
O2': (-5.084,92.861,-2.632)
N1: (-4.268,95.516,-0.331)
N3: (-2.351,96.914,-0.457)
N4: (-1.441,97.792,1.461)
C6: (-4.312,95.663,1.032)
C5: (-3.405,96.411,1.672)
O3': (-5.028,91.083,-0.568)
OP1: (-5.744,91.655,4.104)
OP2: (-4.547,93.970,4.483)
C4: (-2.392,97.045,0.878)
O5': (-5.760,93.427,2.358)
C3': (-5.021,92.460,-0.225)
C1': (-5.236,94.670,-1.030)
O4': (-6.331,94.415,-0.164)
C5': (-6.770,92.809,1.549)
P: (-5.709,93.155,3.924)
O2: (-3.296,96.027,-2.327)
C4': (-6.412,92.987,0.104)
C2': (-4.588,93.332,-1.393)
O2': (-5.084,92.861,-2.632)
N1: (-4.268,95.516,-0.331)
N3: (-2.351,96.914,-0.457)
N4: (-1.441,97.792,1.461)
C6: (-4.312,95.663,1.032)
C5: (-3.405,96.411,1.672)
O3': (-5.028,91.083,-0.568)
OP1: (-0.232,101.813,-10.736)
OP2: (-2.767,101.321,-10.480)
C3': (-4.676,101.596,-6.881)
C1': (-3.386,99.761,-6.082)
C5': (-2.632,102.722,-7.885)
O6: (-2.685,100.807,-0.205)
O4': (-2.595,100.486,-7.006)
C8: (-1.708,100.706,-4.396)
C2: (-5.157,99.144,-2.204)
C6: (-3.225,100.341,-1.229)
C5: (-2.766,100.388,-2.570)
C4: (-3.561,99.843,-3.568)
P: (-1.585,102.213,-10.237)
C4': (-3.420,101.453,-7.712)
C2': (-4.849,100.195,-6.295)
O2': (-5.515,99.307,-7.179)
N1: (-4.454,99.682,-1.138)
N2: (-6.315,98.497,-1.919)
N3: (-4.753,99.218,-3.457)
N7: (-1.595,100.917,-3.108)
N9: (-2.895,100.077,-4.738)
O5': (-1.459,102.446,-8.664)
O3': (-5.765,102.018,-7.711)
OP2: (-2.767,101.321,-10.480)
C3': (-4.676,101.596,-6.881)
C1': (-3.386,99.761,-6.082)
C5': (-2.632,102.722,-7.885)
O6: (-2.685,100.807,-0.205)
O4': (-2.595,100.486,-7.006)
C8: (-1.708,100.706,-4.396)
C2: (-5.157,99.144,-2.204)
C6: (-3.225,100.341,-1.229)
C5: (-2.766,100.388,-2.570)
C4: (-3.561,99.843,-3.568)
P: (-1.585,102.213,-10.237)
C4': (-3.420,101.453,-7.712)
C2': (-4.849,100.195,-6.295)
O2': (-5.515,99.307,-7.179)
N1: (-4.454,99.682,-1.138)
N2: (-6.315,98.497,-1.919)
N3: (-4.753,99.218,-3.457)
N7: (-1.595,100.917,-3.108)
N9: (-2.895,100.077,-4.738)
O5': (-1.459,102.446,-8.664)
O3': (-5.765,102.018,-7.711)
Image (generated by PyMOL):