Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8N:A1398:V33
Extra
PDB:
ATOM 1 O3' C A1397 -104.302 28.902 -6.091 1.00 9.11 O
ATOM 2 P C A1398 -105.810 28.412 -5.873 1.00 14.34 P
ATOM 3 OP1 C A1398 -106.691 29.594 -6.038 1.00 14.34 O
ATOM 4 OP2 C A1398 -105.850 27.650 -4.589 1.00 14.34 O
ATOM 5 O5' C A1398 -106.012 27.424 -7.084 1.00 14.34 O
ATOM 6 C5' C A1398 -105.288 26.203 -7.137 1.00 14.34 C
ATOM 7 C4' C A1398 -105.879 25.283 -8.149 1.00 14.34 C
ATOM 8 O4' C A1398 -107.254 25.038 -7.776 1.00 14.34 O
ATOM 9 C3' C A1398 -105.908 25.847 -9.560 1.00 14.34 C
ATOM 10 O3' C A1398 -105.767 24.804 -10.497 1.00 14.34 O
ATOM 11 C2' C A1398 -107.287 26.450 -9.669 1.00 14.34 C
ATOM 12 O2' C A1398 -107.787 26.497 -10.989 1.00 14.34 O
ATOM 13 C1' C A1398 -108.124 25.531 -8.771 1.00 14.34 C
ATOM 14 N1 C A1398 -109.217 26.227 -8.084 1.00 12.48 N
ATOM 15 C2 C A1398 -110.520 26.153 -8.576 1.00 12.48 C
ATOM 16 O2 C A1398 -110.743 25.480 -9.593 1.00 12.48 O
ATOM 17 N3 C A1398 -111.494 26.830 -7.919 1.00 12.48 N
ATOM 18 C4 C A1398 -111.193 27.544 -6.829 1.00 12.48 C
ATOM 19 N4 C A1398 -112.184 28.196 -6.213 1.00 12.48 N
ATOM 20 C5 C A1398 -109.862 27.636 -6.319 1.00 12.48 C
ATOM 21 C6 C A1398 -108.910 26.966 -6.971 1.00 12.48 C
ATOM 22 P G A1399 -104.312 24.240 -10.812 1.00 7.96 P
ATOM 23 OP1 G A1399 -104.424 23.319 -11.969 1.00 7.96 O
ATOM 24 OP2 G A1399 -103.772 23.729 -9.547 1.00 7.96 O
ATOM 25 O5' G A1399 -103.530 25.534 -11.250 1.00 7.96 O
TER
ATOM 1 O3' U B 32 -113.270 25.930 0.261 1.00 20.60 O
ATOM 2 P G B 33 -114.271 26.921 -0.498 1.00 15.29 P
ATOM 3 OP1 G B 33 -113.444 27.989 -1.116 1.00 15.29 O
ATOM 4 OP2 G B 33 -115.335 27.302 0.483 1.00 15.29 O
ATOM 5 O5' G B 33 -114.883 25.995 -1.637 1.00 15.29 O
ATOM 6 C5' G B 33 -115.987 26.429 -2.408 1.00 15.29 C
ATOM 7 C4' G B 33 -115.948 25.839 -3.787 1.00 15.29 C
ATOM 8 O4' G B 33 -114.905 26.479 -4.557 1.00 15.29 O
ATOM 9 C3' G B 33 -115.612 24.360 -3.856 1.00 15.29 C
ATOM 10 O3' G B 33 -116.739 23.536 -3.642 1.00 15.29 O
ATOM 11 C2' G B 33 -115.015 24.223 -5.241 1.00 15.29 C
ATOM 12 O2' G B 33 -116.036 24.223 -6.222 1.00 15.29 O
ATOM 13 C1' G B 33 -114.241 25.529 -5.356 1.00 15.29 C
ATOM 14 N9 G B 33 -112.859 25.416 -4.861 1.00 15.73 N
ATOM 15 C8 G B 33 -112.411 26.113 -3.761 1.00 15.73 C
ATOM 16 N7 G B 33 -111.154 25.909 -3.492 1.00 15.73 N
ATOM 17 C5 G B 33 -110.753 25.028 -4.484 1.00 15.73 C
ATOM 18 C6 G B 33 -109.480 24.462 -4.691 1.00 15.73 C
ATOM 19 O6 G B 33 -108.458 24.636 -4.026 1.00 15.73 O
ATOM 20 N1 G B 33 -109.460 23.629 -5.784 1.00 15.73 N
ATOM 21 C2 G B 33 -110.540 23.386 -6.562 1.00 15.73 C
ATOM 22 N2 G B 33 -110.287 22.549 -7.556 1.00 15.73 N
ATOM 23 N3 G B 33 -111.748 23.890 -6.394 1.00 15.73 N
ATOM 24 C4 G B 33 -111.781 24.713 -5.341 1.00 15.73 C
ATOM 25 P A B 34 -116.771 22.522 -2.401 1.00 11.71 P
ATOM 26 OP1 A B 34 -118.189 22.248 -2.100 1.00 11.71 O
ATOM 27 OP2 A B 34 -115.913 23.091 -1.328 1.00 11.71 O
ATOM 28 O5' A B 34 -116.100 21.238 -3.015 1.00 11.71 O
TER
ATOM 2 P C A1398 -105.810 28.412 -5.873 1.00 14.34 P
ATOM 3 OP1 C A1398 -106.691 29.594 -6.038 1.00 14.34 O
ATOM 4 OP2 C A1398 -105.850 27.650 -4.589 1.00 14.34 O
ATOM 5 O5' C A1398 -106.012 27.424 -7.084 1.00 14.34 O
ATOM 6 C5' C A1398 -105.288 26.203 -7.137 1.00 14.34 C
ATOM 7 C4' C A1398 -105.879 25.283 -8.149 1.00 14.34 C
ATOM 8 O4' C A1398 -107.254 25.038 -7.776 1.00 14.34 O
ATOM 9 C3' C A1398 -105.908 25.847 -9.560 1.00 14.34 C
ATOM 10 O3' C A1398 -105.767 24.804 -10.497 1.00 14.34 O
ATOM 11 C2' C A1398 -107.287 26.450 -9.669 1.00 14.34 C
ATOM 12 O2' C A1398 -107.787 26.497 -10.989 1.00 14.34 O
ATOM 13 C1' C A1398 -108.124 25.531 -8.771 1.00 14.34 C
ATOM 14 N1 C A1398 -109.217 26.227 -8.084 1.00 12.48 N
ATOM 15 C2 C A1398 -110.520 26.153 -8.576 1.00 12.48 C
ATOM 16 O2 C A1398 -110.743 25.480 -9.593 1.00 12.48 O
ATOM 17 N3 C A1398 -111.494 26.830 -7.919 1.00 12.48 N
ATOM 18 C4 C A1398 -111.193 27.544 -6.829 1.00 12.48 C
ATOM 19 N4 C A1398 -112.184 28.196 -6.213 1.00 12.48 N
ATOM 20 C5 C A1398 -109.862 27.636 -6.319 1.00 12.48 C
ATOM 21 C6 C A1398 -108.910 26.966 -6.971 1.00 12.48 C
ATOM 22 P G A1399 -104.312 24.240 -10.812 1.00 7.96 P
ATOM 23 OP1 G A1399 -104.424 23.319 -11.969 1.00 7.96 O
ATOM 24 OP2 G A1399 -103.772 23.729 -9.547 1.00 7.96 O
ATOM 25 O5' G A1399 -103.530 25.534 -11.250 1.00 7.96 O
TER
ATOM 1 O3' U B 32 -113.270 25.930 0.261 1.00 20.60 O
ATOM 2 P G B 33 -114.271 26.921 -0.498 1.00 15.29 P
ATOM 3 OP1 G B 33 -113.444 27.989 -1.116 1.00 15.29 O
ATOM 4 OP2 G B 33 -115.335 27.302 0.483 1.00 15.29 O
ATOM 5 O5' G B 33 -114.883 25.995 -1.637 1.00 15.29 O
ATOM 6 C5' G B 33 -115.987 26.429 -2.408 1.00 15.29 C
ATOM 7 C4' G B 33 -115.948 25.839 -3.787 1.00 15.29 C
ATOM 8 O4' G B 33 -114.905 26.479 -4.557 1.00 15.29 O
ATOM 9 C3' G B 33 -115.612 24.360 -3.856 1.00 15.29 C
ATOM 10 O3' G B 33 -116.739 23.536 -3.642 1.00 15.29 O
ATOM 11 C2' G B 33 -115.015 24.223 -5.241 1.00 15.29 C
ATOM 12 O2' G B 33 -116.036 24.223 -6.222 1.00 15.29 O
ATOM 13 C1' G B 33 -114.241 25.529 -5.356 1.00 15.29 C
ATOM 14 N9 G B 33 -112.859 25.416 -4.861 1.00 15.73 N
ATOM 15 C8 G B 33 -112.411 26.113 -3.761 1.00 15.73 C
ATOM 16 N7 G B 33 -111.154 25.909 -3.492 1.00 15.73 N
ATOM 17 C5 G B 33 -110.753 25.028 -4.484 1.00 15.73 C
ATOM 18 C6 G B 33 -109.480 24.462 -4.691 1.00 15.73 C
ATOM 19 O6 G B 33 -108.458 24.636 -4.026 1.00 15.73 O
ATOM 20 N1 G B 33 -109.460 23.629 -5.784 1.00 15.73 N
ATOM 21 C2 G B 33 -110.540 23.386 -6.562 1.00 15.73 C
ATOM 22 N2 G B 33 -110.287 22.549 -7.556 1.00 15.73 N
ATOM 23 N3 G B 33 -111.748 23.890 -6.394 1.00 15.73 N
ATOM 24 C4 G B 33 -111.781 24.713 -5.341 1.00 15.73 C
ATOM 25 P A B 34 -116.771 22.522 -2.401 1.00 11.71 P
ATOM 26 OP1 A B 34 -118.189 22.248 -2.100 1.00 11.71 O
ATOM 27 OP2 A B 34 -115.913 23.091 -1.328 1.00 11.71 O
ATOM 28 O5' A B 34 -116.100 21.238 -3.015 1.00 11.71 O
TER
Atoms:
C2: (-110.520,26.153,-8.576)
OP1: (-106.691,29.594,-6.038)
OP2: (-105.850,27.650,-4.589)
C4: (-111.193,27.544,-6.829)
O5': (-106.012,27.424,-7.084)
C3': (-105.908,25.847,-9.560)
C1': (-108.124,25.531,-8.771)
O4': (-107.254,25.038,-7.776)
C5': (-105.288,26.203,-7.137)
P: (-105.810,28.412,-5.873)
O2: (-110.743,25.480,-9.593)
C4': (-105.879,25.283,-8.149)
C2': (-107.287,26.450,-9.669)
O2': (-107.787,26.497,-10.989)
N1: (-109.217,26.227,-8.084)
N3: (-111.494,26.830,-7.919)
N4: (-112.184,28.196,-6.213)
C6: (-108.910,26.966,-6.971)
C5: (-109.862,27.636,-6.319)
O3': (-105.767,24.804,-10.497)
OP1: (-106.691,29.594,-6.038)
OP2: (-105.850,27.650,-4.589)
C4: (-111.193,27.544,-6.829)
O5': (-106.012,27.424,-7.084)
C3': (-105.908,25.847,-9.560)
C1': (-108.124,25.531,-8.771)
O4': (-107.254,25.038,-7.776)
C5': (-105.288,26.203,-7.137)
P: (-105.810,28.412,-5.873)
O2: (-110.743,25.480,-9.593)
C4': (-105.879,25.283,-8.149)
C2': (-107.287,26.450,-9.669)
O2': (-107.787,26.497,-10.989)
N1: (-109.217,26.227,-8.084)
N3: (-111.494,26.830,-7.919)
N4: (-112.184,28.196,-6.213)
C6: (-108.910,26.966,-6.971)
C5: (-109.862,27.636,-6.319)
O3': (-105.767,24.804,-10.497)
OP1: (-113.444,27.989,-1.116)
OP2: (-115.335,27.302,0.483)
C3': (-115.612,24.360,-3.856)
C1': (-114.241,25.529,-5.356)
C5': (-115.987,26.429,-2.408)
O6: (-108.458,24.636,-4.026)
O4': (-114.905,26.479,-4.557)
C8: (-112.411,26.113,-3.761)
C2: (-110.540,23.386,-6.562)
C6: (-109.480,24.462,-4.691)
C5: (-110.753,25.028,-4.484)
C4: (-111.781,24.713,-5.341)
P: (-114.271,26.921,-0.498)
C4': (-115.948,25.839,-3.787)
C2': (-115.015,24.223,-5.241)
O2': (-116.036,24.223,-6.222)
N1: (-109.460,23.629,-5.784)
N2: (-110.287,22.549,-7.556)
N3: (-111.748,23.890,-6.394)
N7: (-111.154,25.909,-3.492)
N9: (-112.859,25.416,-4.861)
O5': (-114.883,25.995,-1.637)
O3': (-116.739,23.536,-3.642)
OP2: (-115.335,27.302,0.483)
C3': (-115.612,24.360,-3.856)
C1': (-114.241,25.529,-5.356)
C5': (-115.987,26.429,-2.408)
O6: (-108.458,24.636,-4.026)
O4': (-114.905,26.479,-4.557)
C8: (-112.411,26.113,-3.761)
C2: (-110.540,23.386,-6.562)
C6: (-109.480,24.462,-4.691)
C5: (-110.753,25.028,-4.484)
C4: (-111.781,24.713,-5.341)
P: (-114.271,26.921,-0.498)
C4': (-115.948,25.839,-3.787)
C2': (-115.015,24.223,-5.241)
O2': (-116.036,24.223,-6.222)
N1: (-109.460,23.629,-5.784)
N2: (-110.287,22.549,-7.556)
N3: (-111.748,23.890,-6.394)
N7: (-111.154,25.909,-3.492)
N9: (-112.859,25.416,-4.861)
O5': (-114.883,25.995,-1.637)
O3': (-116.739,23.536,-3.642)
Image (generated by PyMOL):