Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DK1:B56:B1
Extra
PDB:
ATOM 1 O3' U A 55 -5.481 40.335 36.112 1.00 47.64 O
ATOM 2 P C A 56 -4.147 40.004 36.924 1.00 46.94 P
ATOM 3 OP1 C A 56 -4.097 40.915 38.096 1.00 43.16 O
ATOM 4 OP2 C A 56 -3.042 40.014 35.950 1.00 34.16 O
ATOM 5 O5' C A 56 -4.386 38.508 37.436 1.00 43.39 O
ATOM 6 C5' C A 56 -3.399 37.857 38.262 1.00 56.27 C
ATOM 7 C4' C A 56 -3.838 36.458 38.639 1.00 48.98 C
ATOM 8 O4' C A 56 -4.498 35.836 37.513 1.00 51.88 O
ATOM 9 C3' C A 56 -2.682 35.542 39.035 1.00 53.39 C
ATOM 10 O3' C A 56 -2.718 35.233 40.437 1.00 57.79 O
ATOM 11 C2' C A 56 -3.089 34.182 38.504 1.00 47.18 C
ATOM 12 O2' C A 56 -3.783 33.493 39.534 1.00 48.06 O
ATOM 13 C1' C A 56 -3.956 34.550 37.289 1.00 46.57 C
ATOM 14 N1 C A 56 -3.327 34.578 35.952 1.00 49.51 N
ATOM 15 C2 C A 56 -3.106 33.376 35.253 1.00 58.41 C
ATOM 16 O2 C A 56 -3.387 32.299 35.798 1.00 72.40 O
ATOM 17 N3 C A 56 -2.590 33.427 34.000 1.00 53.86 N
ATOM 18 C4 C A 56 -2.285 34.607 33.449 1.00 49.17 C
ATOM 19 N4 C A 56 -1.778 34.613 32.216 1.00 49.66 N
ATOM 20 C5 C A 56 -2.483 35.836 34.140 1.00 41.53 C
ATOM 21 C6 C A 56 -2.993 35.775 35.379 1.00 50.00 C
TER
ATOM 1 P G B 1 -4.890 25.837 27.454 1.00 96.15 P
ATOM 2 OP1 G B 1 -5.716 24.758 26.841 1.00 88.73 O
ATOM 3 OP2 G B 1 -4.486 27.016 26.639 1.00 95.57 O
ATOM 4 O5' G B 1 -5.644 26.365 28.747 1.00 77.86 O
ATOM 5 C5' G B 1 -5.658 25.574 29.933 1.00 81.85 C
ATOM 6 C4' G B 1 -5.945 26.435 31.136 1.00 80.22 C
ATOM 7 O4' G B 1 -4.836 27.342 31.387 1.00 69.40 O
ATOM 8 C3' G B 1 -7.126 27.381 31.020 1.00 75.35 C
ATOM 9 O3' G B 1 -8.383 26.720 31.119 1.00 63.74 O
ATOM 10 C2' G B 1 -6.851 28.336 32.174 1.00 67.66 C
ATOM 11 O2' G B 1 -7.196 27.789 33.431 1.00 44.42 O
ATOM 12 C1' G B 1 -5.327 28.485 32.073 1.00 65.36 C
ATOM 13 N9 G B 1 -4.957 29.684 31.328 1.00 61.01 N
ATOM 14 C8 G B 1 -4.327 29.776 30.110 1.00 65.21 C
ATOM 15 N7 G B 1 -4.180 31.011 29.705 1.00 52.90 N
ATOM 16 C5 G B 1 -4.734 31.772 30.724 1.00 52.60 C
ATOM 17 C6 G B 1 -4.873 33.184 30.860 1.00 55.17 C
ATOM 18 O6 G B 1 -4.487 34.087 30.090 1.00 39.59 O
ATOM 19 N1 G B 1 -5.531 33.514 32.042 1.00 50.20 N
ATOM 20 C2 G B 1 -5.977 32.610 32.980 1.00 55.55 C
ATOM 21 N2 G B 1 -6.618 33.109 34.049 1.00 60.43 N
ATOM 22 N3 G B 1 -5.818 31.309 32.877 1.00 48.06 N
ATOM 23 C4 G B 1 -5.207 30.962 31.734 1.00 52.19 C
ATOM 24 P G B 2 -9.506 26.990 29.996 1.00 76.75 P
ATOM 25 OP1 G B 2 -10.464 25.849 30.032 1.00 80.34 O
ATOM 26 OP2 G B 2 -8.830 27.344 28.717 1.00 66.42 O
ATOM 27 O5' G B 2 -10.256 28.285 30.536 1.00 71.17 O
TER
ATOM 2 P C A 56 -4.147 40.004 36.924 1.00 46.94 P
ATOM 3 OP1 C A 56 -4.097 40.915 38.096 1.00 43.16 O
ATOM 4 OP2 C A 56 -3.042 40.014 35.950 1.00 34.16 O
ATOM 5 O5' C A 56 -4.386 38.508 37.436 1.00 43.39 O
ATOM 6 C5' C A 56 -3.399 37.857 38.262 1.00 56.27 C
ATOM 7 C4' C A 56 -3.838 36.458 38.639 1.00 48.98 C
ATOM 8 O4' C A 56 -4.498 35.836 37.513 1.00 51.88 O
ATOM 9 C3' C A 56 -2.682 35.542 39.035 1.00 53.39 C
ATOM 10 O3' C A 56 -2.718 35.233 40.437 1.00 57.79 O
ATOM 11 C2' C A 56 -3.089 34.182 38.504 1.00 47.18 C
ATOM 12 O2' C A 56 -3.783 33.493 39.534 1.00 48.06 O
ATOM 13 C1' C A 56 -3.956 34.550 37.289 1.00 46.57 C
ATOM 14 N1 C A 56 -3.327 34.578 35.952 1.00 49.51 N
ATOM 15 C2 C A 56 -3.106 33.376 35.253 1.00 58.41 C
ATOM 16 O2 C A 56 -3.387 32.299 35.798 1.00 72.40 O
ATOM 17 N3 C A 56 -2.590 33.427 34.000 1.00 53.86 N
ATOM 18 C4 C A 56 -2.285 34.607 33.449 1.00 49.17 C
ATOM 19 N4 C A 56 -1.778 34.613 32.216 1.00 49.66 N
ATOM 20 C5 C A 56 -2.483 35.836 34.140 1.00 41.53 C
ATOM 21 C6 C A 56 -2.993 35.775 35.379 1.00 50.00 C
TER
ATOM 1 P G B 1 -4.890 25.837 27.454 1.00 96.15 P
ATOM 2 OP1 G B 1 -5.716 24.758 26.841 1.00 88.73 O
ATOM 3 OP2 G B 1 -4.486 27.016 26.639 1.00 95.57 O
ATOM 4 O5' G B 1 -5.644 26.365 28.747 1.00 77.86 O
ATOM 5 C5' G B 1 -5.658 25.574 29.933 1.00 81.85 C
ATOM 6 C4' G B 1 -5.945 26.435 31.136 1.00 80.22 C
ATOM 7 O4' G B 1 -4.836 27.342 31.387 1.00 69.40 O
ATOM 8 C3' G B 1 -7.126 27.381 31.020 1.00 75.35 C
ATOM 9 O3' G B 1 -8.383 26.720 31.119 1.00 63.74 O
ATOM 10 C2' G B 1 -6.851 28.336 32.174 1.00 67.66 C
ATOM 11 O2' G B 1 -7.196 27.789 33.431 1.00 44.42 O
ATOM 12 C1' G B 1 -5.327 28.485 32.073 1.00 65.36 C
ATOM 13 N9 G B 1 -4.957 29.684 31.328 1.00 61.01 N
ATOM 14 C8 G B 1 -4.327 29.776 30.110 1.00 65.21 C
ATOM 15 N7 G B 1 -4.180 31.011 29.705 1.00 52.90 N
ATOM 16 C5 G B 1 -4.734 31.772 30.724 1.00 52.60 C
ATOM 17 C6 G B 1 -4.873 33.184 30.860 1.00 55.17 C
ATOM 18 O6 G B 1 -4.487 34.087 30.090 1.00 39.59 O
ATOM 19 N1 G B 1 -5.531 33.514 32.042 1.00 50.20 N
ATOM 20 C2 G B 1 -5.977 32.610 32.980 1.00 55.55 C
ATOM 21 N2 G B 1 -6.618 33.109 34.049 1.00 60.43 N
ATOM 22 N3 G B 1 -5.818 31.309 32.877 1.00 48.06 N
ATOM 23 C4 G B 1 -5.207 30.962 31.734 1.00 52.19 C
ATOM 24 P G B 2 -9.506 26.990 29.996 1.00 76.75 P
ATOM 25 OP1 G B 2 -10.464 25.849 30.032 1.00 80.34 O
ATOM 26 OP2 G B 2 -8.830 27.344 28.717 1.00 66.42 O
ATOM 27 O5' G B 2 -10.256 28.285 30.536 1.00 71.17 O
TER
Atoms:
C2: (-3.106,33.376,35.253)
OP1: (-4.097,40.915,38.096)
OP2: (-3.042,40.014,35.950)
C4: (-2.285,34.607,33.449)
O5': (-4.386,38.508,37.436)
C3': (-2.682,35.542,39.035)
C1': (-3.956,34.550,37.289)
O4': (-4.498,35.836,37.513)
C5': (-3.399,37.857,38.262)
P: (-4.147,40.004,36.924)
O2: (-3.387,32.299,35.798)
C4': (-3.838,36.458,38.639)
C2': (-3.089,34.182,38.504)
O2': (-3.783,33.493,39.534)
N1: (-3.327,34.578,35.952)
N3: (-2.590,33.427,34.000)
N4: (-1.778,34.613,32.216)
C6: (-2.993,35.775,35.379)
C5: (-2.483,35.836,34.140)
O3': (-2.718,35.233,40.437)
OP1: (-4.097,40.915,38.096)
OP2: (-3.042,40.014,35.950)
C4: (-2.285,34.607,33.449)
O5': (-4.386,38.508,37.436)
C3': (-2.682,35.542,39.035)
C1': (-3.956,34.550,37.289)
O4': (-4.498,35.836,37.513)
C5': (-3.399,37.857,38.262)
P: (-4.147,40.004,36.924)
O2: (-3.387,32.299,35.798)
C4': (-3.838,36.458,38.639)
C2': (-3.089,34.182,38.504)
O2': (-3.783,33.493,39.534)
N1: (-3.327,34.578,35.952)
N3: (-2.590,33.427,34.000)
N4: (-1.778,34.613,32.216)
C6: (-2.993,35.775,35.379)
C5: (-2.483,35.836,34.140)
O3': (-2.718,35.233,40.437)
OP1: (-5.716,24.758,26.841)
OP2: (-4.486,27.016,26.639)
C3': (-7.126,27.381,31.020)
C1': (-5.327,28.485,32.073)
C5': (-5.658,25.574,29.933)
O6: (-4.487,34.087,30.090)
O4': (-4.836,27.342,31.387)
C8: (-4.327,29.776,30.110)
C2: (-5.977,32.610,32.980)
C6: (-4.873,33.184,30.860)
C5: (-4.734,31.772,30.724)
C4: (-5.207,30.962,31.734)
P: (-4.890,25.837,27.454)
C4': (-5.945,26.435,31.136)
C2': (-6.851,28.336,32.174)
O2': (-7.196,27.789,33.431)
N1: (-5.531,33.514,32.042)
N2: (-6.618,33.109,34.049)
N3: (-5.818,31.309,32.877)
N7: (-4.180,31.011,29.705)
N9: (-4.957,29.684,31.328)
O5': (-5.644,26.365,28.747)
O3': (-8.383,26.720,31.119)
OP2: (-4.486,27.016,26.639)
C3': (-7.126,27.381,31.020)
C1': (-5.327,28.485,32.073)
C5': (-5.658,25.574,29.933)
O6: (-4.487,34.087,30.090)
O4': (-4.836,27.342,31.387)
C8: (-4.327,29.776,30.110)
C2: (-5.977,32.610,32.980)
C6: (-4.873,33.184,30.860)
C5: (-4.734,31.772,30.724)
C4: (-5.207,30.962,31.734)
P: (-4.890,25.837,27.454)
C4': (-5.945,26.435,31.136)
C2': (-6.851,28.336,32.174)
O2': (-7.196,27.789,33.431)
N1: (-5.531,33.514,32.042)
N2: (-6.618,33.109,34.049)
N3: (-5.818,31.309,32.877)
N7: (-4.180,31.011,29.705)
N9: (-4.957,29.684,31.328)
O5': (-5.644,26.365,28.747)
O3': (-8.383,26.720,31.119)
Image (generated by PyMOL):