Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0243:0242
Extra
PDB:
ATOM 1 O3' C A 242 78.669 141.915 -5.150 1.00 83.63 O
ATOM 2 P A A 243 80.084 141.154 -5.164 1.00 85.60 P
ATOM 3 OP1 A A 243 79.871 139.811 -5.772 1.00 85.44 O
ATOM 4 OP2 A A 243 80.662 141.261 -3.796 1.00 85.27 O
ATOM 5 O5' A A 243 80.989 142.025 -6.149 1.00 85.33 O
ATOM 6 C5' A A 243 80.626 142.213 -7.538 1.00 84.40 C
ATOM 7 C4' A A 243 81.512 143.263 -8.176 1.00 83.20 C
ATOM 8 O4' A A 243 81.342 144.525 -7.479 1.00 83.16 O
ATOM 9 C3' A A 243 83.007 142.998 -8.102 1.00 83.27 C
ATOM 10 O3' A A 243 83.434 142.146 -9.158 1.00 83.63 O
ATOM 11 C2' A A 243 83.594 144.396 -8.233 1.00 83.38 C
ATOM 12 O2' A A 243 83.614 144.846 -9.571 1.00 83.65 O
ATOM 13 C1' A A 243 82.576 145.226 -7.449 1.00 83.11 C
ATOM 14 N9 A A 243 82.946 145.474 -6.052 1.00 83.14 N
ATOM 15 C8 A A 243 82.513 144.817 -4.925 1.00 83.31 C
ATOM 16 N7 A A 243 83.013 145.292 -3.810 1.00 82.74 N
ATOM 17 C5 A A 243 83.834 146.329 -4.228 1.00 82.91 C
ATOM 18 C6 A A 243 84.653 147.232 -3.523 1.00 83.02 C
ATOM 19 N6 A A 243 84.778 147.238 -2.195 1.00 82.58 N
ATOM 20 N1 A A 243 85.349 148.140 -4.240 1.00 83.07 N
ATOM 21 C2 A A 243 85.225 148.134 -5.572 1.00 83.22 C
ATOM 22 N3 A A 243 84.489 147.339 -6.348 1.00 83.82 N
ATOM 23 C4 A A 243 83.810 146.448 -5.606 1.00 83.31 C
ATOM 24 P C A 244 84.782 141.284 -8.996 1.00 85.14 P
ATOM 25 OP1 C A 244 85.013 140.603 -10.298 1.00 84.09 O
ATOM 26 OP2 C A 244 84.679 140.475 -7.755 1.00 86.38 O
ATOM 27 O5' C A 244 85.931 142.371 -8.772 1.00 83.26 O
TER
ATOM 1 O3' U B 241 79.918 144.155 0.256 1.00 72.93 O
ATOM 2 P C B 242 78.385 143.964 -0.199 1.00 75.29 P
ATOM 3 OP1 C B 242 77.734 145.295 -0.192 1.00 75.31 O
ATOM 4 OP2 C B 242 77.799 142.854 0.602 1.00 75.16 O
ATOM 5 O5' C B 242 78.491 143.468 -1.710 1.00 76.15 O
ATOM 6 C5' C B 242 77.335 142.976 -2.409 1.00 78.70 C
ATOM 7 C4' C B 242 77.327 143.478 -3.837 1.00 81.28 C
ATOM 8 O4' C B 242 77.184 144.926 -3.855 1.00 81.88 O
ATOM 9 C3' C B 242 78.594 143.236 -4.638 1.00 82.13 C
ATOM 10 O3' C B 242 78.669 141.915 -5.150 1.00 83.63 O
ATOM 11 C2' C B 242 78.478 144.278 -5.741 1.00 81.96 C
ATOM 12 O2' C B 242 77.590 143.884 -6.769 1.00 81.32 O
ATOM 13 C1' C B 242 77.888 145.464 -4.970 1.00 82.23 C
ATOM 14 N1 C B 242 78.913 146.414 -4.477 1.00 82.69 N
ATOM 15 C2 C B 242 79.735 147.084 -5.411 1.00 83.24 C
ATOM 16 O2 C B 242 79.569 146.876 -6.628 1.00 83.39 O
ATOM 17 N3 C B 242 80.688 147.938 -4.959 1.00 82.40 N
ATOM 18 C4 C B 242 80.840 148.137 -3.647 1.00 81.21 C
ATOM 19 N4 C B 242 81.802 148.973 -3.249 1.00 78.81 N
ATOM 20 C5 C B 242 80.015 147.485 -2.684 1.00 81.59 C
ATOM 21 C6 C B 242 79.075 146.641 -3.137 1.00 82.11 C
ATOM 22 P A B 243 80.084 141.154 -5.164 1.00 85.60 P
ATOM 23 OP1 A B 243 79.871 139.811 -5.772 1.00 85.44 O
ATOM 24 OP2 A B 243 80.662 141.261 -3.796 1.00 85.27 O
ATOM 25 O5' A B 243 80.989 142.025 -6.149 1.00 85.33 O
TER
ATOM 2 P A A 243 80.084 141.154 -5.164 1.00 85.60 P
ATOM 3 OP1 A A 243 79.871 139.811 -5.772 1.00 85.44 O
ATOM 4 OP2 A A 243 80.662 141.261 -3.796 1.00 85.27 O
ATOM 5 O5' A A 243 80.989 142.025 -6.149 1.00 85.33 O
ATOM 6 C5' A A 243 80.626 142.213 -7.538 1.00 84.40 C
ATOM 7 C4' A A 243 81.512 143.263 -8.176 1.00 83.20 C
ATOM 8 O4' A A 243 81.342 144.525 -7.479 1.00 83.16 O
ATOM 9 C3' A A 243 83.007 142.998 -8.102 1.00 83.27 C
ATOM 10 O3' A A 243 83.434 142.146 -9.158 1.00 83.63 O
ATOM 11 C2' A A 243 83.594 144.396 -8.233 1.00 83.38 C
ATOM 12 O2' A A 243 83.614 144.846 -9.571 1.00 83.65 O
ATOM 13 C1' A A 243 82.576 145.226 -7.449 1.00 83.11 C
ATOM 14 N9 A A 243 82.946 145.474 -6.052 1.00 83.14 N
ATOM 15 C8 A A 243 82.513 144.817 -4.925 1.00 83.31 C
ATOM 16 N7 A A 243 83.013 145.292 -3.810 1.00 82.74 N
ATOM 17 C5 A A 243 83.834 146.329 -4.228 1.00 82.91 C
ATOM 18 C6 A A 243 84.653 147.232 -3.523 1.00 83.02 C
ATOM 19 N6 A A 243 84.778 147.238 -2.195 1.00 82.58 N
ATOM 20 N1 A A 243 85.349 148.140 -4.240 1.00 83.07 N
ATOM 21 C2 A A 243 85.225 148.134 -5.572 1.00 83.22 C
ATOM 22 N3 A A 243 84.489 147.339 -6.348 1.00 83.82 N
ATOM 23 C4 A A 243 83.810 146.448 -5.606 1.00 83.31 C
ATOM 24 P C A 244 84.782 141.284 -8.996 1.00 85.14 P
ATOM 25 OP1 C A 244 85.013 140.603 -10.298 1.00 84.09 O
ATOM 26 OP2 C A 244 84.679 140.475 -7.755 1.00 86.38 O
ATOM 27 O5' C A 244 85.931 142.371 -8.772 1.00 83.26 O
TER
ATOM 1 O3' U B 241 79.918 144.155 0.256 1.00 72.93 O
ATOM 2 P C B 242 78.385 143.964 -0.199 1.00 75.29 P
ATOM 3 OP1 C B 242 77.734 145.295 -0.192 1.00 75.31 O
ATOM 4 OP2 C B 242 77.799 142.854 0.602 1.00 75.16 O
ATOM 5 O5' C B 242 78.491 143.468 -1.710 1.00 76.15 O
ATOM 6 C5' C B 242 77.335 142.976 -2.409 1.00 78.70 C
ATOM 7 C4' C B 242 77.327 143.478 -3.837 1.00 81.28 C
ATOM 8 O4' C B 242 77.184 144.926 -3.855 1.00 81.88 O
ATOM 9 C3' C B 242 78.594 143.236 -4.638 1.00 82.13 C
ATOM 10 O3' C B 242 78.669 141.915 -5.150 1.00 83.63 O
ATOM 11 C2' C B 242 78.478 144.278 -5.741 1.00 81.96 C
ATOM 12 O2' C B 242 77.590 143.884 -6.769 1.00 81.32 O
ATOM 13 C1' C B 242 77.888 145.464 -4.970 1.00 82.23 C
ATOM 14 N1 C B 242 78.913 146.414 -4.477 1.00 82.69 N
ATOM 15 C2 C B 242 79.735 147.084 -5.411 1.00 83.24 C
ATOM 16 O2 C B 242 79.569 146.876 -6.628 1.00 83.39 O
ATOM 17 N3 C B 242 80.688 147.938 -4.959 1.00 82.40 N
ATOM 18 C4 C B 242 80.840 148.137 -3.647 1.00 81.21 C
ATOM 19 N4 C B 242 81.802 148.973 -3.249 1.00 78.81 N
ATOM 20 C5 C B 242 80.015 147.485 -2.684 1.00 81.59 C
ATOM 21 C6 C B 242 79.075 146.641 -3.137 1.00 82.11 C
ATOM 22 P A B 243 80.084 141.154 -5.164 1.00 85.60 P
ATOM 23 OP1 A B 243 79.871 139.811 -5.772 1.00 85.44 O
ATOM 24 OP2 A B 243 80.662 141.261 -3.796 1.00 85.27 O
ATOM 25 O5' A B 243 80.989 142.025 -6.149 1.00 85.33 O
TER
Atoms:
OP1: (79.871,139.811,-5.772)
OP2: (80.662,141.261,-3.796)
C3': (83.007,142.998,-8.102)
C1': (82.576,145.226,-7.449)
C5': (80.626,142.213,-7.538)
O4': (81.342,144.525,-7.479)
C8: (82.513,144.817,-4.925)
O2': (83.614,144.846,-9.571)
C6: (84.653,147.232,-3.523)
C5: (83.834,146.329,-4.228)
C4: (83.810,146.448,-5.606)
P: (80.084,141.154,-5.164)
C4': (81.512,143.263,-8.176)
C2': (83.594,144.396,-8.233)
C2: (85.225,148.134,-5.572)
N1: (85.349,148.140,-4.240)
N3: (84.489,147.339,-6.348)
N6: (84.778,147.238,-2.195)
N7: (83.013,145.292,-3.810)
N9: (82.946,145.474,-6.052)
O5': (80.989,142.025,-6.149)
O3': (83.434,142.146,-9.158)
OP2: (80.662,141.261,-3.796)
C3': (83.007,142.998,-8.102)
C1': (82.576,145.226,-7.449)
C5': (80.626,142.213,-7.538)
O4': (81.342,144.525,-7.479)
C8: (82.513,144.817,-4.925)
O2': (83.614,144.846,-9.571)
C6: (84.653,147.232,-3.523)
C5: (83.834,146.329,-4.228)
C4: (83.810,146.448,-5.606)
P: (80.084,141.154,-5.164)
C4': (81.512,143.263,-8.176)
C2': (83.594,144.396,-8.233)
C2: (85.225,148.134,-5.572)
N1: (85.349,148.140,-4.240)
N3: (84.489,147.339,-6.348)
N6: (84.778,147.238,-2.195)
N7: (83.013,145.292,-3.810)
N9: (82.946,145.474,-6.052)
O5': (80.989,142.025,-6.149)
O3': (83.434,142.146,-9.158)
C2: (79.735,147.084,-5.411)
OP1: (77.734,145.295,-0.192)
OP2: (77.799,142.854,0.602)
C4: (80.840,148.137,-3.647)
O5': (78.491,143.468,-1.710)
C3': (78.594,143.236,-4.638)
C1': (77.888,145.464,-4.970)
O4': (77.184,144.926,-3.855)
C5': (77.335,142.976,-2.409)
P: (78.385,143.964,-0.199)
O2: (79.569,146.876,-6.628)
C4': (77.327,143.478,-3.837)
C2': (78.478,144.278,-5.741)
O2': (77.590,143.884,-6.769)
N1: (78.913,146.414,-4.477)
N3: (80.688,147.938,-4.959)
N4: (81.802,148.973,-3.249)
C6: (79.075,146.641,-3.137)
C5: (80.015,147.485,-2.684)
O3': (78.669,141.915,-5.150)
OP1: (77.734,145.295,-0.192)
OP2: (77.799,142.854,0.602)
C4: (80.840,148.137,-3.647)
O5': (78.491,143.468,-1.710)
C3': (78.594,143.236,-4.638)
C1': (77.888,145.464,-4.970)
O4': (77.184,144.926,-3.855)
C5': (77.335,142.976,-2.409)
P: (78.385,143.964,-0.199)
O2: (79.569,146.876,-6.628)
C4': (77.327,143.478,-3.837)
C2': (78.478,144.278,-5.741)
O2': (77.590,143.884,-6.769)
N1: (78.913,146.414,-4.477)
N3: (80.688,147.938,-4.959)
N4: (81.802,148.973,-3.249)
C6: (79.075,146.641,-3.137)
C5: (80.015,147.485,-2.684)
O3': (78.669,141.915,-5.150)
Image (generated by PyMOL):