Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0243:0242
Extra
PDB:
ATOM 1 O3' C A 242 78.741 141.864 -5.342 1.00 89.03 O
ATOM 2 P A A 243 80.113 141.033 -5.306 1.00 90.57 P
ATOM 3 OP1 A A 243 79.845 139.697 -5.911 1.00 90.49 O
ATOM 4 OP2 A A 243 80.651 141.121 -3.918 1.00 89.32 O
ATOM 5 O5' A A 243 81.082 141.852 -6.276 1.00 90.84 O
ATOM 6 C5' A A 243 80.761 142.039 -7.678 1.00 89.86 C
ATOM 7 C4' A A 243 81.654 143.100 -8.293 1.00 88.65 C
ATOM 8 O4' A A 243 81.464 144.359 -7.591 1.00 88.67 O
ATOM 9 C3' A A 243 83.153 142.860 -8.205 1.00 87.87 C
ATOM 10 O3' A A 243 83.626 142.010 -9.244 1.00 87.18 O
ATOM 11 C2' A A 243 83.717 144.266 -8.346 1.00 87.98 C
ATOM 12 O2' A A 243 83.725 144.706 -9.685 1.00 88.41 O
ATOM 13 C1' A A 243 82.686 145.083 -7.568 1.00 88.51 C
ATOM 14 N9 A A 243 83.070 145.332 -6.175 1.00 89.06 N
ATOM 15 C8 A A 243 82.677 144.660 -5.044 1.00 89.24 C
ATOM 16 N7 A A 243 83.186 145.145 -3.937 1.00 89.07 N
ATOM 17 C5 A A 243 83.972 146.205 -4.368 1.00 89.07 C
ATOM 18 C6 A A 243 84.781 147.128 -3.677 1.00 89.41 C
ATOM 19 N6 A A 243 84.942 147.133 -2.353 1.00 89.54 N
ATOM 20 N1 A A 243 85.433 148.058 -4.405 1.00 90.28 N
ATOM 21 C2 A A 243 85.282 148.050 -5.734 1.00 90.72 C
ATOM 22 N3 A A 243 84.554 147.235 -6.497 1.00 90.36 N
ATOM 23 C4 A A 243 83.915 146.326 -5.743 1.00 89.35 C
ATOM 24 P C A 244 84.986 141.177 -9.032 1.00 88.50 P
ATOM 25 OP1 C A 244 85.283 140.462 -10.299 1.00 87.86 O
ATOM 26 OP2 C A 244 84.863 140.406 -7.765 1.00 89.67 O
ATOM 27 O5' C A 244 86.108 142.287 -8.807 1.00 87.01 O
TER
ATOM 1 O3' U B 241 79.983 144.051 0.081 1.00 79.93 O
ATOM 2 P C B 242 78.460 143.793 -0.372 1.00 81.39 P
ATOM 3 OP1 C B 242 77.745 145.093 -0.372 1.00 81.04 O
ATOM 4 OP2 C B 242 77.932 142.660 0.431 1.00 81.45 O
ATOM 5 O5' C B 242 78.575 143.294 -1.879 1.00 82.59 O
ATOM 6 C5' C B 242 77.408 142.885 -2.610 1.00 85.08 C
ATOM 7 C4' C B 242 77.443 143.442 -4.017 1.00 87.39 C
ATOM 8 O4' C B 242 77.366 144.896 -3.987 1.00 87.84 O
ATOM 9 C3' C B 242 78.710 143.174 -4.804 1.00 87.78 C
ATOM 10 O3' C B 242 78.741 141.864 -5.342 1.00 89.03 O
ATOM 11 C2' C B 242 78.651 144.249 -5.880 1.00 87.60 C
ATOM 12 O2' C B 242 77.774 143.921 -6.938 1.00 86.63 O
ATOM 13 C1' C B 242 78.093 145.435 -5.085 1.00 87.87 C
ATOM 14 N1 C B 242 79.149 146.334 -4.569 1.00 88.77 N
ATOM 15 C2 C B 242 79.985 147.005 -5.490 1.00 90.18 C
ATOM 16 O2 C B 242 79.807 146.832 -6.711 1.00 91.04 O
ATOM 17 N3 C B 242 80.964 147.820 -5.024 1.00 90.02 N
ATOM 18 C4 C B 242 81.129 147.981 -3.709 1.00 88.69 C
ATOM 19 N4 C B 242 82.111 148.789 -3.298 1.00 87.04 N
ATOM 20 C5 C B 242 80.295 147.320 -2.755 1.00 88.43 C
ATOM 21 C6 C B 242 79.328 146.517 -3.224 1.00 88.06 C
ATOM 22 P A B 243 80.113 141.033 -5.306 1.00 90.57 P
ATOM 23 OP1 A B 243 79.845 139.697 -5.911 1.00 90.49 O
ATOM 24 OP2 A B 243 80.651 141.121 -3.918 1.00 89.32 O
ATOM 25 O5' A B 243 81.082 141.852 -6.276 1.00 90.84 O
TER
ATOM 2 P A A 243 80.113 141.033 -5.306 1.00 90.57 P
ATOM 3 OP1 A A 243 79.845 139.697 -5.911 1.00 90.49 O
ATOM 4 OP2 A A 243 80.651 141.121 -3.918 1.00 89.32 O
ATOM 5 O5' A A 243 81.082 141.852 -6.276 1.00 90.84 O
ATOM 6 C5' A A 243 80.761 142.039 -7.678 1.00 89.86 C
ATOM 7 C4' A A 243 81.654 143.100 -8.293 1.00 88.65 C
ATOM 8 O4' A A 243 81.464 144.359 -7.591 1.00 88.67 O
ATOM 9 C3' A A 243 83.153 142.860 -8.205 1.00 87.87 C
ATOM 10 O3' A A 243 83.626 142.010 -9.244 1.00 87.18 O
ATOM 11 C2' A A 243 83.717 144.266 -8.346 1.00 87.98 C
ATOM 12 O2' A A 243 83.725 144.706 -9.685 1.00 88.41 O
ATOM 13 C1' A A 243 82.686 145.083 -7.568 1.00 88.51 C
ATOM 14 N9 A A 243 83.070 145.332 -6.175 1.00 89.06 N
ATOM 15 C8 A A 243 82.677 144.660 -5.044 1.00 89.24 C
ATOM 16 N7 A A 243 83.186 145.145 -3.937 1.00 89.07 N
ATOM 17 C5 A A 243 83.972 146.205 -4.368 1.00 89.07 C
ATOM 18 C6 A A 243 84.781 147.128 -3.677 1.00 89.41 C
ATOM 19 N6 A A 243 84.942 147.133 -2.353 1.00 89.54 N
ATOM 20 N1 A A 243 85.433 148.058 -4.405 1.00 90.28 N
ATOM 21 C2 A A 243 85.282 148.050 -5.734 1.00 90.72 C
ATOM 22 N3 A A 243 84.554 147.235 -6.497 1.00 90.36 N
ATOM 23 C4 A A 243 83.915 146.326 -5.743 1.00 89.35 C
ATOM 24 P C A 244 84.986 141.177 -9.032 1.00 88.50 P
ATOM 25 OP1 C A 244 85.283 140.462 -10.299 1.00 87.86 O
ATOM 26 OP2 C A 244 84.863 140.406 -7.765 1.00 89.67 O
ATOM 27 O5' C A 244 86.108 142.287 -8.807 1.00 87.01 O
TER
ATOM 1 O3' U B 241 79.983 144.051 0.081 1.00 79.93 O
ATOM 2 P C B 242 78.460 143.793 -0.372 1.00 81.39 P
ATOM 3 OP1 C B 242 77.745 145.093 -0.372 1.00 81.04 O
ATOM 4 OP2 C B 242 77.932 142.660 0.431 1.00 81.45 O
ATOM 5 O5' C B 242 78.575 143.294 -1.879 1.00 82.59 O
ATOM 6 C5' C B 242 77.408 142.885 -2.610 1.00 85.08 C
ATOM 7 C4' C B 242 77.443 143.442 -4.017 1.00 87.39 C
ATOM 8 O4' C B 242 77.366 144.896 -3.987 1.00 87.84 O
ATOM 9 C3' C B 242 78.710 143.174 -4.804 1.00 87.78 C
ATOM 10 O3' C B 242 78.741 141.864 -5.342 1.00 89.03 O
ATOM 11 C2' C B 242 78.651 144.249 -5.880 1.00 87.60 C
ATOM 12 O2' C B 242 77.774 143.921 -6.938 1.00 86.63 O
ATOM 13 C1' C B 242 78.093 145.435 -5.085 1.00 87.87 C
ATOM 14 N1 C B 242 79.149 146.334 -4.569 1.00 88.77 N
ATOM 15 C2 C B 242 79.985 147.005 -5.490 1.00 90.18 C
ATOM 16 O2 C B 242 79.807 146.832 -6.711 1.00 91.04 O
ATOM 17 N3 C B 242 80.964 147.820 -5.024 1.00 90.02 N
ATOM 18 C4 C B 242 81.129 147.981 -3.709 1.00 88.69 C
ATOM 19 N4 C B 242 82.111 148.789 -3.298 1.00 87.04 N
ATOM 20 C5 C B 242 80.295 147.320 -2.755 1.00 88.43 C
ATOM 21 C6 C B 242 79.328 146.517 -3.224 1.00 88.06 C
ATOM 22 P A B 243 80.113 141.033 -5.306 1.00 90.57 P
ATOM 23 OP1 A B 243 79.845 139.697 -5.911 1.00 90.49 O
ATOM 24 OP2 A B 243 80.651 141.121 -3.918 1.00 89.32 O
ATOM 25 O5' A B 243 81.082 141.852 -6.276 1.00 90.84 O
TER
Atoms:
OP1: (79.845,139.697,-5.911)
OP2: (80.651,141.121,-3.918)
C3': (83.153,142.860,-8.205)
C1': (82.686,145.083,-7.568)
C5': (80.761,142.039,-7.678)
O4': (81.464,144.359,-7.591)
C8: (82.677,144.660,-5.044)
O2': (83.725,144.706,-9.685)
C6: (84.781,147.128,-3.677)
C5: (83.972,146.205,-4.368)
C4: (83.915,146.326,-5.743)
P: (80.113,141.033,-5.306)
C4': (81.654,143.100,-8.293)
C2': (83.717,144.266,-8.346)
C2: (85.282,148.050,-5.734)
N1: (85.433,148.058,-4.405)
N3: (84.554,147.235,-6.497)
N6: (84.942,147.133,-2.353)
N7: (83.186,145.145,-3.937)
N9: (83.070,145.332,-6.175)
O5': (81.082,141.852,-6.276)
O3': (83.626,142.010,-9.244)
OP2: (80.651,141.121,-3.918)
C3': (83.153,142.860,-8.205)
C1': (82.686,145.083,-7.568)
C5': (80.761,142.039,-7.678)
O4': (81.464,144.359,-7.591)
C8: (82.677,144.660,-5.044)
O2': (83.725,144.706,-9.685)
C6: (84.781,147.128,-3.677)
C5: (83.972,146.205,-4.368)
C4: (83.915,146.326,-5.743)
P: (80.113,141.033,-5.306)
C4': (81.654,143.100,-8.293)
C2': (83.717,144.266,-8.346)
C2: (85.282,148.050,-5.734)
N1: (85.433,148.058,-4.405)
N3: (84.554,147.235,-6.497)
N6: (84.942,147.133,-2.353)
N7: (83.186,145.145,-3.937)
N9: (83.070,145.332,-6.175)
O5': (81.082,141.852,-6.276)
O3': (83.626,142.010,-9.244)
C2: (79.985,147.005,-5.490)
OP1: (77.745,145.093,-0.372)
OP2: (77.932,142.660,0.431)
C4: (81.129,147.981,-3.709)
O5': (78.575,143.294,-1.879)
C3': (78.710,143.174,-4.804)
C1': (78.093,145.435,-5.085)
O4': (77.366,144.896,-3.987)
C5': (77.408,142.885,-2.610)
P: (78.460,143.793,-0.372)
O2: (79.807,146.832,-6.711)
C4': (77.443,143.442,-4.017)
C2': (78.651,144.249,-5.880)
O2': (77.774,143.921,-6.938)
N1: (79.149,146.334,-4.569)
N3: (80.964,147.820,-5.024)
N4: (82.111,148.789,-3.298)
C6: (79.328,146.517,-3.224)
C5: (80.295,147.320,-2.755)
O3': (78.741,141.864,-5.342)
OP1: (77.745,145.093,-0.372)
OP2: (77.932,142.660,0.431)
C4: (81.129,147.981,-3.709)
O5': (78.575,143.294,-1.879)
C3': (78.710,143.174,-4.804)
C1': (78.093,145.435,-5.085)
O4': (77.366,144.896,-3.987)
C5': (77.408,142.885,-2.610)
P: (78.460,143.793,-0.372)
O2: (79.807,146.832,-6.711)
C4': (77.443,143.442,-4.017)
C2': (78.651,144.249,-5.880)
O2': (77.774,143.921,-6.938)
N1: (79.149,146.334,-4.569)
N3: (80.964,147.820,-5.024)
N4: (82.111,148.789,-3.298)
C6: (79.328,146.517,-3.224)
C5: (80.295,147.320,-2.755)
O3': (78.741,141.864,-5.342)
Image (generated by PyMOL):