Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBY:B33:B6
Extra
PDB:
ATOM 1 O3' C A 32 -28.439 58.910 -0.733 1.00104.40 O
ATOM 2 P C A 33 -27.703 57.502 -0.963 1.00106.44 P
ATOM 3 OP1 C A 33 -28.698 56.547 -1.512 1.00106.11 O
ATOM 4 OP2 C A 33 -26.967 57.170 0.284 1.00106.45 O
ATOM 5 O5' C A 33 -26.609 57.811 -2.079 1.00106.45 O
ATOM 6 C5' C A 33 -27.007 58.160 -3.396 1.00106.71 C
ATOM 7 C4' C A 33 -25.803 58.465 -4.251 1.00106.94 C
ATOM 8 O4' C A 33 -25.109 59.626 -3.730 1.00106.40 O
ATOM 9 C3' C A 33 -24.714 57.408 -4.320 1.00107.19 C
ATOM 10 O3' C A 33 -24.998 56.375 -5.244 1.00109.33 O
ATOM 11 C2' C A 33 -23.502 58.206 -4.774 1.00105.79 C
ATOM 12 O2' C A 33 -23.462 58.384 -6.174 1.00104.45 O
ATOM 13 C1' C A 33 -23.743 59.546 -4.084 1.00105.68 C
ATOM 14 N1 C A 33 -22.914 59.692 -2.885 1.00105.19 N
ATOM 15 C2 C A 33 -21.569 59.976 -3.074 1.00104.91 C
ATOM 16 O2 C A 33 -21.151 60.077 -4.235 1.00105.06 O
ATOM 17 N3 C A 33 -20.762 60.129 -2.004 1.00103.95 N
ATOM 18 C4 C A 33 -21.258 60.006 -0.775 1.00104.14 C
ATOM 19 N4 C A 33 -20.417 60.177 0.255 1.00103.15 N
ATOM 20 C5 C A 33 -22.637 59.706 -0.546 1.00104.59 C
ATOM 21 C6 C A 33 -23.425 59.558 -1.623 1.00104.31 C
ATOM 22 P G A 34 -24.243 54.965 -5.096 1.00110.53 P
ATOM 23 OP1 G A 34 -24.839 54.059 -6.109 1.00111.18 O
ATOM 24 OP2 G A 34 -24.269 54.584 -3.656 1.00109.34 O
ATOM 25 O5' G A 34 -22.737 55.288 -5.521 1.00110.63 O
TER
ATOM 1 O3' G B 5 -13.373 66.513 -5.764 1.00118.51 O
ATOM 2 P G B 6 -14.355 67.731 -5.367 1.00118.07 P
ATOM 3 OP1 G B 6 -14.083 68.859 -6.294 1.00116.99 O
ATOM 4 OP2 G B 6 -14.257 67.953 -3.896 1.00117.20 O
ATOM 5 O5' G B 6 -15.803 67.158 -5.716 1.00116.93 O
ATOM 6 C5' G B 6 -16.127 66.811 -7.062 1.00115.92 C
ATOM 7 C4' G B 6 -17.612 66.590 -7.226 1.00114.81 C
ATOM 8 O4' G B 6 -18.006 65.277 -6.748 1.00114.46 O
ATOM 9 C3' G B 6 -18.517 67.552 -6.484 1.00114.44 C
ATOM 10 O3' G B 6 -18.631 68.813 -7.131 1.00114.01 O
ATOM 11 C2' G B 6 -19.829 66.775 -6.421 1.00114.39 C
ATOM 12 O2' G B 6 -20.595 66.875 -7.609 1.00114.05 O
ATOM 13 C1' G B 6 -19.330 65.337 -6.237 1.00113.50 C
ATOM 14 N9 G B 6 -19.288 64.978 -4.822 1.00111.89 N
ATOM 15 C8 G B 6 -18.256 65.210 -3.945 1.00111.38 C
ATOM 16 N7 G B 6 -18.525 64.837 -2.726 1.00110.40 N
ATOM 17 C5 G B 6 -19.805 64.313 -2.802 1.00109.50 C
ATOM 18 C6 G B 6 -20.609 63.767 -1.796 1.00108.77 C
ATOM 19 O6 G B 6 -20.334 63.635 -0.592 1.00108.41 O
ATOM 20 N1 G B 6 -21.842 63.353 -2.299 1.00107.69 N
ATOM 21 C2 G B 6 -22.236 63.459 -3.618 1.00107.93 C
ATOM 22 N2 G B 6 -23.459 63.012 -3.929 1.00107.02 N
ATOM 23 N3 G B 6 -21.480 63.972 -4.569 1.00108.76 N
ATOM 24 C4 G B 6 -20.287 64.379 -4.094 1.00110.05 C
ATOM 25 P C B 7 -18.976 70.118 -6.254 1.00113.76 P
ATOM 26 OP1 C B 7 -19.041 71.281 -7.172 1.00113.38 O
ATOM 27 OP2 C B 7 -18.042 70.149 -5.095 1.00112.93 O
ATOM 28 O5' C B 7 -20.452 69.819 -5.729 1.00112.82 O
TER
ATOM 2 P C A 33 -27.703 57.502 -0.963 1.00106.44 P
ATOM 3 OP1 C A 33 -28.698 56.547 -1.512 1.00106.11 O
ATOM 4 OP2 C A 33 -26.967 57.170 0.284 1.00106.45 O
ATOM 5 O5' C A 33 -26.609 57.811 -2.079 1.00106.45 O
ATOM 6 C5' C A 33 -27.007 58.160 -3.396 1.00106.71 C
ATOM 7 C4' C A 33 -25.803 58.465 -4.251 1.00106.94 C
ATOM 8 O4' C A 33 -25.109 59.626 -3.730 1.00106.40 O
ATOM 9 C3' C A 33 -24.714 57.408 -4.320 1.00107.19 C
ATOM 10 O3' C A 33 -24.998 56.375 -5.244 1.00109.33 O
ATOM 11 C2' C A 33 -23.502 58.206 -4.774 1.00105.79 C
ATOM 12 O2' C A 33 -23.462 58.384 -6.174 1.00104.45 O
ATOM 13 C1' C A 33 -23.743 59.546 -4.084 1.00105.68 C
ATOM 14 N1 C A 33 -22.914 59.692 -2.885 1.00105.19 N
ATOM 15 C2 C A 33 -21.569 59.976 -3.074 1.00104.91 C
ATOM 16 O2 C A 33 -21.151 60.077 -4.235 1.00105.06 O
ATOM 17 N3 C A 33 -20.762 60.129 -2.004 1.00103.95 N
ATOM 18 C4 C A 33 -21.258 60.006 -0.775 1.00104.14 C
ATOM 19 N4 C A 33 -20.417 60.177 0.255 1.00103.15 N
ATOM 20 C5 C A 33 -22.637 59.706 -0.546 1.00104.59 C
ATOM 21 C6 C A 33 -23.425 59.558 -1.623 1.00104.31 C
ATOM 22 P G A 34 -24.243 54.965 -5.096 1.00110.53 P
ATOM 23 OP1 G A 34 -24.839 54.059 -6.109 1.00111.18 O
ATOM 24 OP2 G A 34 -24.269 54.584 -3.656 1.00109.34 O
ATOM 25 O5' G A 34 -22.737 55.288 -5.521 1.00110.63 O
TER
ATOM 1 O3' G B 5 -13.373 66.513 -5.764 1.00118.51 O
ATOM 2 P G B 6 -14.355 67.731 -5.367 1.00118.07 P
ATOM 3 OP1 G B 6 -14.083 68.859 -6.294 1.00116.99 O
ATOM 4 OP2 G B 6 -14.257 67.953 -3.896 1.00117.20 O
ATOM 5 O5' G B 6 -15.803 67.158 -5.716 1.00116.93 O
ATOM 6 C5' G B 6 -16.127 66.811 -7.062 1.00115.92 C
ATOM 7 C4' G B 6 -17.612 66.590 -7.226 1.00114.81 C
ATOM 8 O4' G B 6 -18.006 65.277 -6.748 1.00114.46 O
ATOM 9 C3' G B 6 -18.517 67.552 -6.484 1.00114.44 C
ATOM 10 O3' G B 6 -18.631 68.813 -7.131 1.00114.01 O
ATOM 11 C2' G B 6 -19.829 66.775 -6.421 1.00114.39 C
ATOM 12 O2' G B 6 -20.595 66.875 -7.609 1.00114.05 O
ATOM 13 C1' G B 6 -19.330 65.337 -6.237 1.00113.50 C
ATOM 14 N9 G B 6 -19.288 64.978 -4.822 1.00111.89 N
ATOM 15 C8 G B 6 -18.256 65.210 -3.945 1.00111.38 C
ATOM 16 N7 G B 6 -18.525 64.837 -2.726 1.00110.40 N
ATOM 17 C5 G B 6 -19.805 64.313 -2.802 1.00109.50 C
ATOM 18 C6 G B 6 -20.609 63.767 -1.796 1.00108.77 C
ATOM 19 O6 G B 6 -20.334 63.635 -0.592 1.00108.41 O
ATOM 20 N1 G B 6 -21.842 63.353 -2.299 1.00107.69 N
ATOM 21 C2 G B 6 -22.236 63.459 -3.618 1.00107.93 C
ATOM 22 N2 G B 6 -23.459 63.012 -3.929 1.00107.02 N
ATOM 23 N3 G B 6 -21.480 63.972 -4.569 1.00108.76 N
ATOM 24 C4 G B 6 -20.287 64.379 -4.094 1.00110.05 C
ATOM 25 P C B 7 -18.976 70.118 -6.254 1.00113.76 P
ATOM 26 OP1 C B 7 -19.041 71.281 -7.172 1.00113.38 O
ATOM 27 OP2 C B 7 -18.042 70.149 -5.095 1.00112.93 O
ATOM 28 O5' C B 7 -20.452 69.819 -5.729 1.00112.82 O
TER
Atoms:
C2: (-21.569,59.976,-3.074)
OP1: (-28.698,56.547,-1.512)
OP2: (-26.967,57.170,0.284)
C4: (-21.258,60.006,-0.775)
O5': (-26.609,57.811,-2.079)
C3': (-24.714,57.408,-4.320)
C1': (-23.743,59.546,-4.084)
O4': (-25.109,59.626,-3.730)
C5': (-27.007,58.160,-3.396)
P: (-27.703,57.502,-0.963)
O2: (-21.151,60.077,-4.235)
C4': (-25.803,58.465,-4.251)
C2': (-23.502,58.206,-4.774)
O2': (-23.462,58.384,-6.174)
N1: (-22.914,59.692,-2.885)
N3: (-20.762,60.129,-2.004)
N4: (-20.417,60.177,0.255)
C6: (-23.425,59.558,-1.623)
C5: (-22.637,59.706,-0.546)
O3': (-24.998,56.375,-5.244)
OP1: (-28.698,56.547,-1.512)
OP2: (-26.967,57.170,0.284)
C4: (-21.258,60.006,-0.775)
O5': (-26.609,57.811,-2.079)
C3': (-24.714,57.408,-4.320)
C1': (-23.743,59.546,-4.084)
O4': (-25.109,59.626,-3.730)
C5': (-27.007,58.160,-3.396)
P: (-27.703,57.502,-0.963)
O2: (-21.151,60.077,-4.235)
C4': (-25.803,58.465,-4.251)
C2': (-23.502,58.206,-4.774)
O2': (-23.462,58.384,-6.174)
N1: (-22.914,59.692,-2.885)
N3: (-20.762,60.129,-2.004)
N4: (-20.417,60.177,0.255)
C6: (-23.425,59.558,-1.623)
C5: (-22.637,59.706,-0.546)
O3': (-24.998,56.375,-5.244)
OP1: (-14.083,68.859,-6.294)
OP2: (-14.257,67.953,-3.896)
C3': (-18.517,67.552,-6.484)
C1': (-19.330,65.337,-6.237)
C5': (-16.127,66.811,-7.062)
O6: (-20.334,63.635,-0.592)
O4': (-18.006,65.277,-6.748)
C8: (-18.256,65.210,-3.945)
C2: (-22.236,63.459,-3.618)
C6: (-20.609,63.767,-1.796)
C5: (-19.805,64.313,-2.802)
C4: (-20.287,64.379,-4.094)
P: (-14.355,67.731,-5.367)
C4': (-17.612,66.590,-7.226)
C2': (-19.829,66.775,-6.421)
O2': (-20.595,66.875,-7.609)
N1: (-21.842,63.353,-2.299)
N2: (-23.459,63.012,-3.929)
N3: (-21.480,63.972,-4.569)
N7: (-18.525,64.837,-2.726)
N9: (-19.288,64.978,-4.822)
O5': (-15.803,67.158,-5.716)
O3': (-18.631,68.813,-7.131)
OP2: (-14.257,67.953,-3.896)
C3': (-18.517,67.552,-6.484)
C1': (-19.330,65.337,-6.237)
C5': (-16.127,66.811,-7.062)
O6: (-20.334,63.635,-0.592)
O4': (-18.006,65.277,-6.748)
C8: (-18.256,65.210,-3.945)
C2: (-22.236,63.459,-3.618)
C6: (-20.609,63.767,-1.796)
C5: (-19.805,64.313,-2.802)
C4: (-20.287,64.379,-4.094)
P: (-14.355,67.731,-5.367)
C4': (-17.612,66.590,-7.226)
C2': (-19.829,66.775,-6.421)
O2': (-20.595,66.875,-7.609)
N1: (-21.842,63.353,-2.299)
N2: (-23.459,63.012,-3.929)
N3: (-21.480,63.972,-4.569)
N7: (-18.525,64.837,-2.726)
N9: (-19.288,64.978,-4.822)
O5': (-15.803,67.158,-5.716)
O3': (-18.631,68.813,-7.131)
Image (generated by PyMOL):