Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0243:0242
Extra
PDB:
ATOM 1 O3' C A 242 79.023 141.832 -4.948 1.00100.40 O
ATOM 2 P A A 243 80.426 141.050 -5.017 1.00101.59 P
ATOM 3 OP1 A A 243 80.181 139.722 -5.650 1.00100.78 O
ATOM 4 OP2 A A 243 81.024 141.116 -3.654 1.00101.23 O
ATOM 5 O5' A A 243 81.317 141.935 -6.006 1.00101.14 O
ATOM 6 C5' A A 243 80.972 142.076 -7.408 1.00100.44 C
ATOM 7 C4' A A 243 81.849 143.122 -8.066 1.00 99.44 C
ATOM 8 O4' A A 243 81.618 144.410 -7.438 1.00 99.62 O
ATOM 9 C3' A A 243 83.349 142.902 -7.939 1.00 99.70 C
ATOM 10 O3' A A 243 83.835 142.037 -8.964 1.00 99.73 O
ATOM 11 C2' A A 243 83.904 144.311 -8.089 1.00 99.42 C
ATOM 12 O2' A A 243 83.975 144.719 -9.437 1.00 99.64 O
ATOM 13 C1' A A 243 82.834 145.140 -7.378 1.00 99.26 C
ATOM 14 N9 A A 243 83.138 145.432 -5.974 1.00 99.11 N
ATOM 15 C8 A A 243 82.678 144.784 -4.852 1.00 99.27 C
ATOM 16 N7 A A 243 83.107 145.303 -3.728 1.00 98.93 N
ATOM 17 C5 A A 243 83.911 146.360 -4.133 1.00 98.82 C
ATOM 18 C6 A A 243 84.661 147.311 -3.413 1.00 98.89 C
ATOM 19 N6 A A 243 84.719 147.358 -2.081 1.00 98.68 N
ATOM 20 N1 A A 243 85.359 148.225 -4.120 1.00 99.10 N
ATOM 21 C2 A A 243 85.297 148.183 -5.458 1.00 99.40 C
ATOM 22 N3 A A 243 84.627 147.342 -6.247 1.00 99.57 N
ATOM 23 C4 A A 243 83.946 146.445 -5.514 1.00 98.97 C
ATOM 24 P C A 244 85.240 141.273 -8.774 1.00100.39 P
ATOM 25 OP1 C A 244 85.549 140.633 -10.075 1.00100.57 O
ATOM 26 OP2 C A 244 85.173 140.438 -7.543 1.00101.21 O
ATOM 27 O5' C A 244 86.303 142.436 -8.523 1.00 98.77 O
TER
ATOM 1 O3' U B 241 80.427 144.257 0.334 1.00 92.29 O
ATOM 2 P C B 242 78.876 144.097 -0.071 1.00 94.07 P
ATOM 3 OP1 C B 242 78.254 145.439 0.008 1.00 93.83 O
ATOM 4 OP2 C B 242 78.293 142.967 0.708 1.00 94.53 O
ATOM 5 O5' C B 242 78.914 143.654 -1.601 1.00 95.18 O
ATOM 6 C5' C B 242 77.749 143.094 -2.243 1.00 96.81 C
ATOM 7 C4' C B 242 77.723 143.482 -3.706 1.00 98.30 C
ATOM 8 O4' C B 242 77.570 144.922 -3.825 1.00 98.94 O
ATOM 9 C3' C B 242 78.991 143.177 -4.486 1.00 98.81 C
ATOM 10 O3' C B 242 79.023 141.832 -4.948 1.00100.40 O
ATOM 11 C2' C B 242 78.918 144.169 -5.636 1.00 98.71 C
ATOM 12 O2' C B 242 78.055 143.731 -6.666 1.00 98.47 O
ATOM 13 C1' C B 242 78.317 145.395 -4.938 1.00 98.88 C
ATOM 14 N1 C B 242 79.312 146.385 -4.461 1.00 99.18 N
ATOM 15 C2 C B 242 80.137 147.037 -5.401 1.00 99.68 C
ATOM 16 O2 C B 242 80.029 146.750 -6.608 1.00100.07 O
ATOM 17 N3 C B 242 81.033 147.962 -4.966 1.00 99.60 N
ATOM 18 C4 C B 242 81.130 148.237 -3.661 1.00 98.89 C
ATOM 19 N4 C B 242 82.025 149.155 -3.278 1.00 97.05 N
ATOM 20 C5 C B 242 80.316 147.584 -2.690 1.00 99.03 C
ATOM 21 C6 C B 242 79.431 146.676 -3.128 1.00 98.86 C
ATOM 22 P A B 243 80.426 141.050 -5.017 1.00101.59 P
ATOM 23 OP1 A B 243 80.181 139.722 -5.650 1.00100.78 O
ATOM 24 OP2 A B 243 81.024 141.116 -3.654 1.00101.23 O
ATOM 25 O5' A B 243 81.317 141.935 -6.006 1.00101.14 O
TER
ATOM 2 P A A 243 80.426 141.050 -5.017 1.00101.59 P
ATOM 3 OP1 A A 243 80.181 139.722 -5.650 1.00100.78 O
ATOM 4 OP2 A A 243 81.024 141.116 -3.654 1.00101.23 O
ATOM 5 O5' A A 243 81.317 141.935 -6.006 1.00101.14 O
ATOM 6 C5' A A 243 80.972 142.076 -7.408 1.00100.44 C
ATOM 7 C4' A A 243 81.849 143.122 -8.066 1.00 99.44 C
ATOM 8 O4' A A 243 81.618 144.410 -7.438 1.00 99.62 O
ATOM 9 C3' A A 243 83.349 142.902 -7.939 1.00 99.70 C
ATOM 10 O3' A A 243 83.835 142.037 -8.964 1.00 99.73 O
ATOM 11 C2' A A 243 83.904 144.311 -8.089 1.00 99.42 C
ATOM 12 O2' A A 243 83.975 144.719 -9.437 1.00 99.64 O
ATOM 13 C1' A A 243 82.834 145.140 -7.378 1.00 99.26 C
ATOM 14 N9 A A 243 83.138 145.432 -5.974 1.00 99.11 N
ATOM 15 C8 A A 243 82.678 144.784 -4.852 1.00 99.27 C
ATOM 16 N7 A A 243 83.107 145.303 -3.728 1.00 98.93 N
ATOM 17 C5 A A 243 83.911 146.360 -4.133 1.00 98.82 C
ATOM 18 C6 A A 243 84.661 147.311 -3.413 1.00 98.89 C
ATOM 19 N6 A A 243 84.719 147.358 -2.081 1.00 98.68 N
ATOM 20 N1 A A 243 85.359 148.225 -4.120 1.00 99.10 N
ATOM 21 C2 A A 243 85.297 148.183 -5.458 1.00 99.40 C
ATOM 22 N3 A A 243 84.627 147.342 -6.247 1.00 99.57 N
ATOM 23 C4 A A 243 83.946 146.445 -5.514 1.00 98.97 C
ATOM 24 P C A 244 85.240 141.273 -8.774 1.00100.39 P
ATOM 25 OP1 C A 244 85.549 140.633 -10.075 1.00100.57 O
ATOM 26 OP2 C A 244 85.173 140.438 -7.543 1.00101.21 O
ATOM 27 O5' C A 244 86.303 142.436 -8.523 1.00 98.77 O
TER
ATOM 1 O3' U B 241 80.427 144.257 0.334 1.00 92.29 O
ATOM 2 P C B 242 78.876 144.097 -0.071 1.00 94.07 P
ATOM 3 OP1 C B 242 78.254 145.439 0.008 1.00 93.83 O
ATOM 4 OP2 C B 242 78.293 142.967 0.708 1.00 94.53 O
ATOM 5 O5' C B 242 78.914 143.654 -1.601 1.00 95.18 O
ATOM 6 C5' C B 242 77.749 143.094 -2.243 1.00 96.81 C
ATOM 7 C4' C B 242 77.723 143.482 -3.706 1.00 98.30 C
ATOM 8 O4' C B 242 77.570 144.922 -3.825 1.00 98.94 O
ATOM 9 C3' C B 242 78.991 143.177 -4.486 1.00 98.81 C
ATOM 10 O3' C B 242 79.023 141.832 -4.948 1.00100.40 O
ATOM 11 C2' C B 242 78.918 144.169 -5.636 1.00 98.71 C
ATOM 12 O2' C B 242 78.055 143.731 -6.666 1.00 98.47 O
ATOM 13 C1' C B 242 78.317 145.395 -4.938 1.00 98.88 C
ATOM 14 N1 C B 242 79.312 146.385 -4.461 1.00 99.18 N
ATOM 15 C2 C B 242 80.137 147.037 -5.401 1.00 99.68 C
ATOM 16 O2 C B 242 80.029 146.750 -6.608 1.00100.07 O
ATOM 17 N3 C B 242 81.033 147.962 -4.966 1.00 99.60 N
ATOM 18 C4 C B 242 81.130 148.237 -3.661 1.00 98.89 C
ATOM 19 N4 C B 242 82.025 149.155 -3.278 1.00 97.05 N
ATOM 20 C5 C B 242 80.316 147.584 -2.690 1.00 99.03 C
ATOM 21 C6 C B 242 79.431 146.676 -3.128 1.00 98.86 C
ATOM 22 P A B 243 80.426 141.050 -5.017 1.00101.59 P
ATOM 23 OP1 A B 243 80.181 139.722 -5.650 1.00100.78 O
ATOM 24 OP2 A B 243 81.024 141.116 -3.654 1.00101.23 O
ATOM 25 O5' A B 243 81.317 141.935 -6.006 1.00101.14 O
TER
Atoms:
OP1: (80.181,139.722,-5.650)
OP2: (81.024,141.116,-3.654)
C3': (83.349,142.902,-7.939)
C1': (82.834,145.140,-7.378)
C5': (80.972,142.076,-7.408)
O4': (81.618,144.410,-7.438)
C8: (82.678,144.784,-4.852)
O2': (83.975,144.719,-9.437)
C6: (84.661,147.311,-3.413)
C5: (83.911,146.360,-4.133)
C4: (83.946,146.445,-5.514)
P: (80.426,141.050,-5.017)
C4': (81.849,143.122,-8.066)
C2': (83.904,144.311,-8.089)
C2: (85.297,148.183,-5.458)
N1: (85.359,148.225,-4.120)
N3: (84.627,147.342,-6.247)
N6: (84.719,147.358,-2.081)
N7: (83.107,145.303,-3.728)
N9: (83.138,145.432,-5.974)
O5': (81.317,141.935,-6.006)
O3': (83.835,142.037,-8.964)
OP2: (81.024,141.116,-3.654)
C3': (83.349,142.902,-7.939)
C1': (82.834,145.140,-7.378)
C5': (80.972,142.076,-7.408)
O4': (81.618,144.410,-7.438)
C8: (82.678,144.784,-4.852)
O2': (83.975,144.719,-9.437)
C6: (84.661,147.311,-3.413)
C5: (83.911,146.360,-4.133)
C4: (83.946,146.445,-5.514)
P: (80.426,141.050,-5.017)
C4': (81.849,143.122,-8.066)
C2': (83.904,144.311,-8.089)
C2: (85.297,148.183,-5.458)
N1: (85.359,148.225,-4.120)
N3: (84.627,147.342,-6.247)
N6: (84.719,147.358,-2.081)
N7: (83.107,145.303,-3.728)
N9: (83.138,145.432,-5.974)
O5': (81.317,141.935,-6.006)
O3': (83.835,142.037,-8.964)
C2: (80.137,147.037,-5.401)
OP1: (78.254,145.439,0.008)
OP2: (78.293,142.967,0.708)
C4: (81.130,148.237,-3.661)
O5': (78.914,143.654,-1.601)
C3': (78.991,143.177,-4.486)
C1': (78.317,145.395,-4.938)
O4': (77.570,144.922,-3.825)
C5': (77.749,143.094,-2.243)
P: (78.876,144.097,-0.071)
O2: (80.029,146.750,-6.608)
C4': (77.723,143.482,-3.706)
C2': (78.918,144.169,-5.636)
O2': (78.055,143.731,-6.666)
N1: (79.312,146.385,-4.461)
N3: (81.033,147.962,-4.966)
N4: (82.025,149.155,-3.278)
C6: (79.431,146.676,-3.128)
C5: (80.316,147.584,-2.690)
O3': (79.023,141.832,-4.948)
OP1: (78.254,145.439,0.008)
OP2: (78.293,142.967,0.708)
C4: (81.130,148.237,-3.661)
O5': (78.914,143.654,-1.601)
C3': (78.991,143.177,-4.486)
C1': (78.317,145.395,-4.938)
O4': (77.570,144.922,-3.825)
C5': (77.749,143.094,-2.243)
P: (78.876,144.097,-0.071)
O2: (80.029,146.750,-6.608)
C4': (77.723,143.482,-3.706)
C2': (78.918,144.169,-5.636)
O2': (78.055,143.731,-6.666)
N1: (79.312,146.385,-4.461)
N3: (81.033,147.962,-4.966)
N4: (82.025,149.155,-3.278)
C6: (79.431,146.676,-3.128)
C5: (80.316,147.584,-2.690)
O3': (79.023,141.832,-4.948)
Image (generated by PyMOL):