Doublet info:
Details
Nucleotide types:
AC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A48:A47
Extra
PDB:
ATOM 1 O3' C A 47 14.261 -1.571 -4.617 1.00 84.30 O
ATOM 2 P A A 48 15.562 -0.970 -5.341 1.00 87.16 P
ATOM 3 OP1 A A 48 15.773 -1.643 -6.640 1.00 87.56 O
ATOM 4 OP2 A A 48 16.716 -0.914 -4.429 1.00 90.12 O
ATOM 5 O5' A A 48 15.096 0.537 -5.505 1.00 88.24 O
ATOM 6 C5' A A 48 13.914 0.830 -6.190 1.00 89.34 C
ATOM 7 C4' A A 48 13.609 2.260 -5.850 1.00 89.66 C
ATOM 8 O4' A A 48 13.506 2.382 -4.419 1.00 89.29 O
ATOM 9 C3' A A 48 14.709 3.252 -6.183 1.00 91.44 C
ATOM 10 O3' A A 48 14.751 3.541 -7.565 1.00 93.91 O
ATOM 11 C2' A A 48 14.234 4.424 -5.343 1.00 91.45 C
ATOM 12 O2' A A 48 13.078 5.056 -5.860 1.00 92.99 O
ATOM 13 C1' A A 48 13.962 3.670 -4.047 1.00 90.49 C
ATOM 14 N9 A A 48 15.173 3.565 -3.224 1.00 90.65 N
ATOM 15 C8 A A 48 16.089 2.539 -3.169 1.00 90.51 C
ATOM 16 N7 A A 48 17.084 2.763 -2.326 1.00 90.11 N
ATOM 17 C5 A A 48 16.801 4.013 -1.797 1.00 88.46 C
ATOM 18 C6 A A 48 17.469 4.815 -0.853 1.00 87.69 C
ATOM 19 N6 A A 48 18.603 4.422 -0.274 1.00 87.34 N
ATOM 20 N1 A A 48 16.933 6.017 -0.536 1.00 86.58 N
ATOM 21 C2 A A 48 15.792 6.377 -1.141 1.00 87.66 C
ATOM 22 N3 A A 48 15.073 5.713 -2.052 1.00 88.83 N
ATOM 23 C4 A A 48 15.635 4.525 -2.338 1.00 89.36 C
ATOM 24 P G A 49 16.115 3.444 -8.383 1.00 94.53 P
ATOM 25 OP1 G A 49 15.796 3.629 -9.822 1.00 95.56 O
ATOM 26 OP2 G A 49 16.881 2.259 -7.943 1.00 92.93 O
ATOM 27 O5' G A 49 16.850 4.753 -7.847 1.00 93.73 O
TER
ATOM 1 O3' C B 46 16.181 -5.093 -0.250 1.00 81.88 O
ATOM 2 P C B 47 16.872 -4.175 -1.357 1.00 83.57 P
ATOM 3 OP1 C B 47 17.431 -5.173 -2.302 1.00 82.27 O
ATOM 4 OP2 C B 47 17.664 -3.077 -0.727 1.00 78.84 O
ATOM 5 O5' C B 47 15.710 -3.381 -2.100 1.00 82.97 O
ATOM 6 C5' C B 47 14.378 -3.831 -2.278 1.00 81.85 C
ATOM 7 C4' C B 47 13.483 -2.619 -2.545 1.00 81.25 C
ATOM 8 O4' C B 47 12.959 -2.090 -1.290 1.00 79.06 O
ATOM 9 C3' C B 47 14.159 -1.426 -3.209 1.00 81.45 C
ATOM 10 O3' C B 47 14.261 -1.571 -4.617 1.00 84.30 O
ATOM 11 C2' C B 47 13.246 -0.293 -2.781 1.00 79.71 C
ATOM 12 O2' C B 47 12.091 -0.211 -3.572 1.00 80.57 O
ATOM 13 C1' C B 47 12.953 -0.689 -1.338 1.00 76.29 C
ATOM 14 N1 C B 47 14.014 -0.143 -0.450 1.00 70.89 N
ATOM 15 C2 C B 47 13.811 1.111 0.106 1.00 70.12 C
ATOM 16 O2 C B 47 12.754 1.705 -0.141 1.00 75.05 O
ATOM 17 N3 C B 47 14.752 1.655 0.902 1.00 66.63 N
ATOM 18 C4 C B 47 15.877 0.993 1.143 1.00 65.84 C
ATOM 19 N4 C B 47 16.787 1.570 1.942 1.00 63.74 N
ATOM 20 C5 C B 47 16.118 -0.291 0.579 1.00 67.24 C
ATOM 21 C6 C B 47 15.173 -0.809 -0.211 1.00 68.38 C
ATOM 22 P A B 48 15.562 -0.970 -5.341 1.00 87.16 P
ATOM 23 OP1 A B 48 15.773 -1.643 -6.640 1.00 87.56 O
ATOM 24 OP2 A B 48 16.716 -0.914 -4.429 1.00 90.12 O
ATOM 25 O5' A B 48 15.096 0.537 -5.505 1.00 88.24 O
TER
ATOM 2 P A A 48 15.562 -0.970 -5.341 1.00 87.16 P
ATOM 3 OP1 A A 48 15.773 -1.643 -6.640 1.00 87.56 O
ATOM 4 OP2 A A 48 16.716 -0.914 -4.429 1.00 90.12 O
ATOM 5 O5' A A 48 15.096 0.537 -5.505 1.00 88.24 O
ATOM 6 C5' A A 48 13.914 0.830 -6.190 1.00 89.34 C
ATOM 7 C4' A A 48 13.609 2.260 -5.850 1.00 89.66 C
ATOM 8 O4' A A 48 13.506 2.382 -4.419 1.00 89.29 O
ATOM 9 C3' A A 48 14.709 3.252 -6.183 1.00 91.44 C
ATOM 10 O3' A A 48 14.751 3.541 -7.565 1.00 93.91 O
ATOM 11 C2' A A 48 14.234 4.424 -5.343 1.00 91.45 C
ATOM 12 O2' A A 48 13.078 5.056 -5.860 1.00 92.99 O
ATOM 13 C1' A A 48 13.962 3.670 -4.047 1.00 90.49 C
ATOM 14 N9 A A 48 15.173 3.565 -3.224 1.00 90.65 N
ATOM 15 C8 A A 48 16.089 2.539 -3.169 1.00 90.51 C
ATOM 16 N7 A A 48 17.084 2.763 -2.326 1.00 90.11 N
ATOM 17 C5 A A 48 16.801 4.013 -1.797 1.00 88.46 C
ATOM 18 C6 A A 48 17.469 4.815 -0.853 1.00 87.69 C
ATOM 19 N6 A A 48 18.603 4.422 -0.274 1.00 87.34 N
ATOM 20 N1 A A 48 16.933 6.017 -0.536 1.00 86.58 N
ATOM 21 C2 A A 48 15.792 6.377 -1.141 1.00 87.66 C
ATOM 22 N3 A A 48 15.073 5.713 -2.052 1.00 88.83 N
ATOM 23 C4 A A 48 15.635 4.525 -2.338 1.00 89.36 C
ATOM 24 P G A 49 16.115 3.444 -8.383 1.00 94.53 P
ATOM 25 OP1 G A 49 15.796 3.629 -9.822 1.00 95.56 O
ATOM 26 OP2 G A 49 16.881 2.259 -7.943 1.00 92.93 O
ATOM 27 O5' G A 49 16.850 4.753 -7.847 1.00 93.73 O
TER
ATOM 1 O3' C B 46 16.181 -5.093 -0.250 1.00 81.88 O
ATOM 2 P C B 47 16.872 -4.175 -1.357 1.00 83.57 P
ATOM 3 OP1 C B 47 17.431 -5.173 -2.302 1.00 82.27 O
ATOM 4 OP2 C B 47 17.664 -3.077 -0.727 1.00 78.84 O
ATOM 5 O5' C B 47 15.710 -3.381 -2.100 1.00 82.97 O
ATOM 6 C5' C B 47 14.378 -3.831 -2.278 1.00 81.85 C
ATOM 7 C4' C B 47 13.483 -2.619 -2.545 1.00 81.25 C
ATOM 8 O4' C B 47 12.959 -2.090 -1.290 1.00 79.06 O
ATOM 9 C3' C B 47 14.159 -1.426 -3.209 1.00 81.45 C
ATOM 10 O3' C B 47 14.261 -1.571 -4.617 1.00 84.30 O
ATOM 11 C2' C B 47 13.246 -0.293 -2.781 1.00 79.71 C
ATOM 12 O2' C B 47 12.091 -0.211 -3.572 1.00 80.57 O
ATOM 13 C1' C B 47 12.953 -0.689 -1.338 1.00 76.29 C
ATOM 14 N1 C B 47 14.014 -0.143 -0.450 1.00 70.89 N
ATOM 15 C2 C B 47 13.811 1.111 0.106 1.00 70.12 C
ATOM 16 O2 C B 47 12.754 1.705 -0.141 1.00 75.05 O
ATOM 17 N3 C B 47 14.752 1.655 0.902 1.00 66.63 N
ATOM 18 C4 C B 47 15.877 0.993 1.143 1.00 65.84 C
ATOM 19 N4 C B 47 16.787 1.570 1.942 1.00 63.74 N
ATOM 20 C5 C B 47 16.118 -0.291 0.579 1.00 67.24 C
ATOM 21 C6 C B 47 15.173 -0.809 -0.211 1.00 68.38 C
ATOM 22 P A B 48 15.562 -0.970 -5.341 1.00 87.16 P
ATOM 23 OP1 A B 48 15.773 -1.643 -6.640 1.00 87.56 O
ATOM 24 OP2 A B 48 16.716 -0.914 -4.429 1.00 90.12 O
ATOM 25 O5' A B 48 15.096 0.537 -5.505 1.00 88.24 O
TER
Atoms:
OP1: (15.773,-1.643,-6.640)
OP2: (16.716,-0.914,-4.429)
C3': (14.709,3.252,-6.183)
C1': (13.962,3.670,-4.047)
C5': (13.914,0.830,-6.190)
O4': (13.506,2.382,-4.419)
C8: (16.089,2.539,-3.169)
O2': (13.078,5.056,-5.860)
C6: (17.469,4.815,-0.853)
C5: (16.801,4.013,-1.797)
C4: (15.635,4.525,-2.338)
P: (15.562,-0.970,-5.341)
C4': (13.609,2.260,-5.850)
C2': (14.234,4.424,-5.343)
C2: (15.792,6.377,-1.141)
N1: (16.933,6.017,-0.536)
N3: (15.073,5.713,-2.052)
N6: (18.603,4.422,-0.274)
N7: (17.084,2.763,-2.326)
N9: (15.173,3.565,-3.224)
O5': (15.096,0.537,-5.505)
O3': (14.751,3.541,-7.565)
OP2: (16.716,-0.914,-4.429)
C3': (14.709,3.252,-6.183)
C1': (13.962,3.670,-4.047)
C5': (13.914,0.830,-6.190)
O4': (13.506,2.382,-4.419)
C8: (16.089,2.539,-3.169)
O2': (13.078,5.056,-5.860)
C6: (17.469,4.815,-0.853)
C5: (16.801,4.013,-1.797)
C4: (15.635,4.525,-2.338)
P: (15.562,-0.970,-5.341)
C4': (13.609,2.260,-5.850)
C2': (14.234,4.424,-5.343)
C2: (15.792,6.377,-1.141)
N1: (16.933,6.017,-0.536)
N3: (15.073,5.713,-2.052)
N6: (18.603,4.422,-0.274)
N7: (17.084,2.763,-2.326)
N9: (15.173,3.565,-3.224)
O5': (15.096,0.537,-5.505)
O3': (14.751,3.541,-7.565)
C2: (13.811,1.111,0.106)
OP1: (17.431,-5.173,-2.302)
OP2: (17.664,-3.077,-0.727)
C4: (15.877,0.993,1.143)
O5': (15.710,-3.381,-2.100)
C3': (14.159,-1.426,-3.209)
C1': (12.953,-0.689,-1.338)
O4': (12.959,-2.090,-1.290)
C5': (14.378,-3.831,-2.278)
P: (16.872,-4.175,-1.357)
O2: (12.754,1.705,-0.141)
C4': (13.483,-2.619,-2.545)
C2': (13.246,-0.293,-2.781)
O2': (12.091,-0.211,-3.572)
N1: (14.014,-0.143,-0.450)
N3: (14.752,1.655,0.902)
N4: (16.787,1.570,1.942)
C6: (15.173,-0.809,-0.211)
C5: (16.118,-0.291,0.579)
O3': (14.261,-1.571,-4.617)
OP1: (17.431,-5.173,-2.302)
OP2: (17.664,-3.077,-0.727)
C4: (15.877,0.993,1.143)
O5': (15.710,-3.381,-2.100)
C3': (14.159,-1.426,-3.209)
C1': (12.953,-0.689,-1.338)
O4': (12.959,-2.090,-1.290)
C5': (14.378,-3.831,-2.278)
P: (16.872,-4.175,-1.357)
O2: (12.754,1.705,-0.141)
C4': (13.483,-2.619,-2.545)
C2': (13.246,-0.293,-2.781)
O2': (12.091,-0.211,-3.572)
N1: (14.014,-0.143,-0.450)
N3: (14.752,1.655,0.902)
N4: (16.787,1.570,1.942)
C6: (15.173,-0.809,-0.211)
C5: (16.118,-0.291,0.579)
O3': (14.261,-1.571,-4.617)
Image (generated by PyMOL):