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Reference RNA structures collected by CompaRNA since February 18, 2009


The following list contains RNA chains automatically extracted from the Protein Data Bank database.

In total 4177 RNA chains from 1935 PDB records have been extracted by CompaRNA. Out of them, 342 RNA chains are valid. RNA chain is considered valid if:

  • it has a secondary structure
  • no defects were detected after manual inspection of the PDB structure
  • it is at least 20 nucleotides long
  • no RNAs having similar sequence were earlier released from the PDB database


PDB id Date
RNA
chain
id
RNA
chain
length
Ref 2D Ref 3D
4TV0 2014-09-17
B 25 std ext pdb
4TZY 2014-09-10
X 71 std ext pdb
2MS1 2014-09-10
B 71 std ext pdb
2MQT 2014-09-10
A 68 std ext pdb
4U8T 2014-09-10
O 7 std ext pdb
P 7 std ext pdb
Q 7 std ext pdb
R 7 std ext pdb
S 7 std ext pdb
T 7 std ext pdb
4TZZ 2014-09-10
B 73 std ext pdb
C 102 std ext pdb
E 73 std ext pdb
F 102 std ext pdb
H 73 std ext pdb
I 102 std ext pdb
K 72 std ext pdb
L 102 std ext pdb
4TZX 2014-09-10
X 71 std ext pdb
4TZW 2014-09-10
B 73 std ext pdb
C 102 std ext pdb
4TZV 2014-09-10
B 73 std ext pdb
C 102 std ext pdb
4TZP 2014-09-10
B 68 std ext pdb
C 102 std ext pdb
E 73 std ext pdb
F 102 std ext pdb
4OQ9 2014-09-10
P 10 std ext pdb
Q 10 std ext pdb
R 10 std ext pdb
S 10 std ext pdb
T 10 std ext pdb
U 10 std ext pdb
V 10 std ext pdb
W 10 std ext pdb
X 10 std ext pdb
Y 10 std ext pdb
Z 10 std ext pdb
a 10 std ext pdb
b 10 std ext pdb
c 10 std ext pdb
d 10 std ext pdb
e 10 std ext pdb
f 10 std ext pdb
g 10 std ext pdb
h 10 std ext pdb
i 10 std ext pdb
j 10 std ext pdb
k 10 std ext pdb
l 10 std ext pdb
m 10 std ext pdb
n 10 std ext pdb
o 10 std ext pdb
p 10 std ext pdb
q 10 std ext pdb
r 10 std ext pdb
s 10 std ext pdb
4OQ8 2014-09-10
B 10 std ext pdb
C 10 std ext pdb
4O8J 2014-09-10
D 5 std ext pdb
E 5 std ext pdb
4NL3 2014-09-10
R 6 std ext pdb
Z 6 std ext pdb
4NIA 2014-09-10
P 10 std ext pdb
Q 10 std ext pdb
R 10 std ext pdb
S 10 std ext pdb
T 10 std ext pdb
U 10 std ext pdb
V 10 std ext pdb
W 10 std ext pdb
X 10 std ext pdb
Y 10 std ext pdb
Z 10 std ext pdb
a 10 std ext pdb
b 10 std ext pdb
c 10 std ext pdb
d 10 std ext pdb
e 10 std ext pdb
f 10 std ext pdb
g 10 std ext pdb
h 10 std ext pdb
i 10 std ext pdb
j 10 std ext pdb
k 10 std ext pdb
l 10 std ext pdb
m 10 std ext pdb
n 10 std ext pdb
o 10 std ext pdb
p 10 std ext pdb
q 10 std ext pdb
r 10 std ext pdb
s 10 std ext pdb
4W26 2014-09-04
5 3718 std ext pdb
7 120 std ext pdb
8 156 std ext pdb
4W23 2014-09-04
2 1721 std ext pdb
4W21 2014-09-04
5 3660 std ext pdb
7 120 std ext pdb
8 156 std ext pdb
4W1Z 2014-09-04
5 3660 std ext pdb
7 120 std ext pdb
8 156 std ext pdb
4W28 2014-09-03
2 1721 std ext pdb
4 10 std ext pdb
5 74 std ext pdb
6 76 std ext pdb
4QJD 2014-09-03
A 23 std ext pdb
B 47 std ext pdb
C 24 std ext pdb
D 46 std ext pdb
E 25 std ext pdb
F 46 std ext pdb
G 24 std ext pdb
H 47 std ext pdb
4PDB 2014-09-03
I 38 std ext pdb
4QYZ 2014-09-03
L 55 std ext pdb
4QQB 2014-09-03
C 17 std ext pdb
P 17 std ext pdb
4CIO 2014-09-03
B 7 std ext pdb