RNA Secondary Structure Atlas - PDB - CMfinder(seed)

2MIY_A	[ FASTA input ]	GCUUGGUGCUUAGCUUCUUUCACCAAGCAUAUUACACGCGGAUAACCGCCAAAGGAGAA
	[ reference std structure ]	((((((((.....[[[[[[.)))))))).........(((......)))..]]]]]]..
	[ reference ext structure ]	((((((((.[{..<<<<...)))))))).........(((......)))..]}>>>>..                  (                                  )                         (                                )
	[ predicted structure ]	.............(((((((.................((((....)))).)))))))..
4BY9_A	[ FASTA input ]	GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
	[ reference std structure ]	((((((....................(...((((....))))......).................))))))
	[ reference ext structure ]	((((((...((((.............(((((((((..)))))...)))).............))))))))))                           (                      )
	[ predicted structure ]	..........................(.(..(((.........((.....))))..).....).).......
4C4Q_N	[ FASTA input ]	GACUAGCCGUAGUGGCGAGCUCCCUGGGUGGUCUAAGUCCUGAGUACAGGACAGUCGUCAGUAGUUCGACGUGAGCACUAGCCCACCUCGAGAUGCUACGUGGACGAGGGCAUGCCCAAGACACACCUUAACCCUGGCGGGGGUCGCUAGGGUGAAAUCACAUUAUGUGAUGGGGGUACGACCUGAUAGGGUGCUGCAGAGGCCCACUAGCAGGCUAGUAUAAAAAUCUCUGC
	[ reference std structure ]	.(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((..((((((((.(((.((....)).))).))))...))))....)))))(((....))).)))).)))))..((((((((((...))))))))))....(((((...))))).)))))).)).(((....))).((..[[[[.))))))))...))))))).........]]]].
	[ reference ext structure ]	.(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((.(((((((((.(((((((..))))))).))))...)))))...)))))(((....))).))))).))))..((((((((((...))))))))))....(((((...))))).)))))).))(((((..)))))((..[[[[[))))))))...)))))))........]]]]].                              (                                                                                             )                                                                                                                                        (                                                                                                      )                                                                                                            (                                                                                                                                                                                                                            )                                                                                                                      (   )
	[ predicted structure ]	.(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((.(((((((((.(((.((....)).))).))))...)))))...)))))(((....))).)))).)))))..(((((((((.....)))))))))...(((((.....))))))))))).))((((....))))(((.....)))))))))...)))))))..............
4P5J_A	[ FASTA input ]	AGCUCGCCAGUUAGCGAGGUCUGUCUCGACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACC
	[ reference std structure ]	.((((((..[...)))))(((((((.......)))))))...{{{{..]....}}}}(((...{{{{{{))).).}}}}}}..
	[ reference ext structure ]	.(((((([[()..)))))(((((((.......)))))))...{{{{{]..}].}}}}(((..{{{{{{{))).).}}}}}}.}                                                                        ()                                                                                 (   )                  (                                      )
	[ predicted structure ]	..(((((......)))))(((((((.......)))))))...((((.......)))).(((((....)))))...........

• N/A - RNA 2D structure in Vienna format could not have been generated (most likely due to difficult to represent pseudoknot structure). Check secondary structure file for details.
• std - standard base pair definition
• ext - extended base pair definition